jgi.p|Nanoce1779_2|568143, mRNA_7809 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568143
Unique Name	mRNA_7809
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	975
Alignment location	scaffold_21:381334..383300 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568229
Track	FilteredModels2
ProteinId	568143

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:381334..383300 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568143	gene_7809	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568143	mRNA_7809-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7809	CDS_7809	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:381334..383300+
coding sequence from alignment at scaffold_21:381334..383300+

mRNA sequence

>mRNA_7809 ID=mRNA_7809|Name=jgi.p|Nanoce1779_2|568143|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTCA
GTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGTC
AAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGAC
GCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCACA
TCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGTC
CTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAAA
ACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAAG
CCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCCC
GAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCATG
GGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAAG
GGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGAG
GTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGGA
TTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTTC
CTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACCG
GCGTGGGGGGGGGTGAGTGCTGCGGCGAAGGATCTGGTGAGGTGCGGACC
AACATCCGGATGGAGCCCGGCATGA

protein sequence of jgi.p|Nanoce1779_2|568143

>mRNA_7809-protein ID=mRNA_7809-protein|Name=jgi.p|Nanoce1779_2|568143|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MIPYYQGYRQGGEEQGTDNDSQNDSGSSSPGQPPLQQEPQLDAIMMPPPP
PIRMPSCPTKPSRDIEAFNRLYVLHEEIGRGAFSVVHRCTNRVTGEDFAV
KLIDLRPLQLRDNFDQTRLRREVEIMQRLEHPHIIKLEGVYENDTNLMLV
LEYARGTELFDSILQKKRYSEDDARPIFTQVAQALLYLHSLNIIHRDVKP
ENVVLLDTLSPEGHFPWAKLLDFGLSKMVGTDEGSAARTFVGTPCYLAPE
VEARAYGRGGGYGVKVDCWSLGAVLYVMLVARFPEFDRSKGGMTVKLEAP
AWGGVSAAAKDLVRCGPTSGWSPA*

mRNA from alignment at scaffold_21:381334..383300+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7809 ID=mRNA_7809|Name=jgi.p|Nanoce1779_2|568143|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp|location=Sequence derived from alignment at scaffold_21:381334..383300+ (Nannochloropsis oceanica)
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGGTACACAAGGATGAAACGCTTAGGTGTATCTTTTGAAGGGG
AATGGAGCATATCATGAAGATTATTTCATTGCGTGTGCTACCATAGCCCA
AGTGCATGTTTGCGGTGCTTATGTATCGCGGCGGAGTTGGAAGCATTGGC
CACTTGACAAGTGTCGTGGCTTGACCTATGGTATATTTTGAATTTTCGGG
CCTTTTTGCAGCAGATACATGGTATTCCCTGCAGTTGCCTCACCCTGCTT
CATCGCACCTCTGGTATAGCAATCCATTCTCTCTTCCTTCCCTCCCCATC
CTCCCTACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTC
AGTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGT
CAAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGA
CGCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCAC
ATCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGT
CCTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAA
AACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAA
GCCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCC
CGAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCAT
GGGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAA
GGGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGA
GGTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGG
ATTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTT
CCTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACC
GGCGTGGGGGGGGGTGAGTGCTGCGGCGAAGGATCTGGTGAGGTGTTTGA
TGCAGGTATGTACGGCGTGCCTTTTCTCCCCTCCCTCCTCCCCTCCCTCC
CTTTCGCTCTATTTTGTCTGCACGTGATGCATGATCTGCAAGCTACTACT
TACCATACATCAGGTTCTGACCCTCCCTCCCTCCCTCCCTCACTCCCTCT
CTCCCTCTCTCCCTCCCTCCTTCCCAAGGTTGACCCGCAAGCACGCTTCA
GCGTCGCGCAAGCCCTCAAACACCCGTGGATTACCGGAGAGCCCTTTGTA
GGACCGACCATTCAAACCTCCTCCTCCGCGCAACGGCAGCAGCAGCAGCA
GCAGCAGCGGATGGATGGGATGATGGGGCGCTTGGCCGTGGGGGGAGGAA
GAGGGAAACTGCCTCTAGCCCTTCCTCCCTCCCCTCCTCCCGCTCCCCCG
ACCCCTCGAGAACTGTCTGCGTCTATATCGACGACGATGGGGCTGGAAGA
GTGTACGGGCGGAGGGAGCTACGACGAGGAGATATTCCGACTGACCTCCT
CCGGTGACCAGGTACGCGTTCGGCTGGCCCCCTTGCACCCCTCCCTTCCT
CCCTCTCTCATTCCCTTCCCCCCCCCTCCTGATTCTCATTCTTAACAGAC
AAATTGCAGGTGTAATCTTAAGTGTGTATCTTATTCATCATCCTTTTTTC
CTTCCTCCCTCCTTCCTTTCCTCCCCTTTTCAGGTGCGGACCAACATCCG
GATGGAGCCCGGCATGA

Coding sequence (CDS) from alignment at scaffold_21:381334..383300+

>mRNA_7809 ID=mRNA_7809|Name=jgi.p|Nanoce1779_2|568143|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_21:381334..383300+ (Nannochloropsis oceanica)
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTCA
GTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGTC
AAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGAC
GCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCACA
TCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGTC
CTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAAA
ACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAAG
CCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCCC
GAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCATG
GGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAAG
GGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGAG
GTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGGA
TTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTTC
CTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACCG
GCGTGGGGGGGGGTGAGTGCTGCGGCGAAGGATCTGGTGAGGTGCGGACC
AACATCCGGATGGAGCCCGGCATGAATGATACCATACTACCAAGGATACC
GACAGGGTGGGGAGGAACAGGGGACGGACAACGATAGTCAAAATGATAGT
GGTTCCAGCAGCCCCGGTCAGCCGCCTCTGCAACAGGAGCCGCAGCTAGA
TGCTATCATGATGCCTCCGCCACCGCCAATTCGAATGCCCTCATGCCCAA
CCAAGCCCTCCCGCGACATCGAGGCGTTCAACAGACTGTACGTCCTGCAC
GAAGAAATCGGCCGTGGTGCCTTCAGTGTCGTCCACCGGTGCACCAACCG
GGTGACCGGCGAAGATTTTGCCGTCAAATTAATCGATCTCCGGCCCTTGC
AACTCCGTGATAACTTTGATCAGACGCGCCTACGACGAGAAGTTGAAATA
ATGCAACGCCTAGAACACCCCCACATCATCAAGCTCGAAGGTGTCTACGA
GAATGACACCAACTTAATGCTTGTCCTTGAGTATGCCCGCGGGACCGAAC
TGTTTGACTCCATCCTACAGAAAAAACGGTACTCGGAAGACGACGCTCGG
CCCATATTCACGCAAGTCGCGCAAGCCCTGCTGTACCTCCACTCCCTCAA
CATCATCCACCGGGACGTAAAGCCCGAAAATGTCGTCTTGTTGGACACTC
TCTCCCCAGAGGGGCATTTTCCATGGGCCAAGCTCCTTGATTTTGGCTTG
AGCAAGATGGTGGGGACGGATGAAGGGTCGGCGGCACGGACCTTTGTGGG
CACGCCATGCTACCTGGCGCCCGAGGTGGAGGCGAGGGCCTATGGGAGAG
GGGGAGGGTACGGGGTGAAGGTGGATTGTTGGAGCTTGGGTGCGGTGTTG
TATGTTATGCTGGTGGCGCGGTTTCCTGAGTTTGATCGGAGTAAGGGGGG
GATGACGGTCAAGTTGGAAGCACCGGCGTGGGGGGGGGTGAGTGCTGCGG
CGAAGGATCTGGTGAGGTGCGGACCAACATCCGGATGGAGCCCGGCATGA
ATGATACCATACTACCAAGGATACCGACAGGGTGGGGAGGAACAGGGGAC
GGACAACGATAGTCAAAATGATAGTGGTTCCAGCAGCCCCGGTCAGCCGC
CTCTGCAACAGGAGCCGCAGCTAGATGCTATCATGATGCCTCCGCCACCG
CCAATTCGAATGCCCTCATGCCCAACCAAGCCCTCCCGCGACATCGAGGC
GTTCAACAGACTGTACGTCCTGCACGAAGAAATCGGCCGTGGTGCCTTCA
GTGTCGTCCACCGGTGCACCAACCGGGTGACCGGCGAAGATTTTGCCGTC
AAATTAATCGATCTCCGGCCCTTGCAACTCCGTGATAACTTTGATCAGAC
GCGCCTACGACGAGAAGTTGAAATAATGCAACGCCTAGAACACCCCCACA
TCATCAAGCTCGAAGGTGTCTACGAGAATGACACCAACTTAATGCTTGTC
CTTGAGTATGCCCGCGGGACCGAACTGTTTGACTCCATCCTACAGAAAAA
ACGGTACTCGGAAGACGACGCTCGGCCCATATTCACGCAAGTCGCGCAAG
CCCTGCTGTACCTCCACTCCCTCAACATCATCCACCGGGACGTAAAGCCC
GAAAATGTCGTCTTGTTGGACACTCTCTCCCCAGAGGGGCATTTTCCATG
GGCCAAGCTCCTTGATTTTGGCTTGAGCAAGATGGTGGGGACGGATGAAG
GGTCGGCGGCACGGACCTTTGTGGGCACGCCATGCTACCTGGCGCCCGAG
GTGGAGGCGAGGGCCTATGGGAGAGGGGGAGGGTACGGGGTGAAGGTGGA
TTGTTGGAGCTTGGGTGCGGTGTTGTATGTTATGCTGGTGGCGCGGTTTC
CTGAGTTTGATCGGAGTAAGGGGGGGATGACGGTCAAGTTGGAAGCACCG
GCGTGGGGGGGGGTGAGTGCTGCGGCGAAGGATCTGGTGAGGTGCGGACC
AACATCCGGATGGAGCCCGGCATGA

Synonyms

Publications