jgi.p|Nanoce1779_2|169237, mRNA_7806 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|169237
Unique Name	mRNA_7806
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1527
Alignment location	scaffold_21:376467..378292 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	169323
Track	FilteredModels2
ProteinId	169237

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:376467..378292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|169237	gene_7806	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|169237	mRNA_7806-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7806	CDS_7806	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:376467..378292+
coding sequence from alignment at scaffold_21:376467..378292+

mRNA sequence

>mRNA_7806 ID=mRNA_7806|Name=jgi.p|Nanoce1779_2|169237|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
GGTGTGTGTGTGTGTGTACCTGTGTATCTGTGTGGGTGTGTGAATGTGTG
AGTGTATGGGAGTTCATCTCGTGGCGGGAATAAGTAAAGGGAGGACCTCT
GACGGGAAAACGGACATAAGGTCAACCATATTAATTGATTTGTGCTTTCT
TCTCTTTCATCCCCACCCTTGCAGTTGGGCGTGTACCTCGTAAGCGAGCT
TTGGTACCTGTTCGTCGCGGGCTTTTACTACTTGTGCTGGGCACAAGACT
GGTTTCTCCGCTACCGCATTCAAAAACGAGCCACCATGCCTGATAACGCT
CTAATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCCCTCGGTCG
CCTACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACATGGGAATGG
AGGTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGCACTGGGTC
TTGGCCTTAGCCATAAATGACACACTATTCTACTGGACTCATAGACTGAT
GCATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCACGAGTTCA
GGGTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGGAAGTGGCG
ATGTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTTGGTTCCCA
CCTCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGAGACATGTG
CAGCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGCAATTACCT
TTTTTCAATGGTCCGCAGATGCATGATTACCACCACTCGCACAATGTTGG
AGCCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGGTACTGACG
GTCACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCATCCCTTGC
AAGGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTTCCCTCCCT
CCACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTGGGAGGGAG
GAAAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCATGTTCAAG
AGCAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACCAGCACCGA
TGGCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTCTAATGAAA
ACATTAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTGATTTGCCC
AGCGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGCGGCATCAA
CGATATAGATAGCAGCAACAACAAATGAATGTAAAGAGAGCATTGCAAGG
AAACTCAGAAATTGATAGCACCACGGCAGCACGGGCACAGAAAAAGGGAG
GCAAAAAAGGCAAAAAGTATTGATGTGAATGGCATGTAGTTGGTCATACC
AACCAAAAAAAGAAAACACCGTGTGTACATGATTCCATAAGTGTGCTATC
AAAGCCCCTGCGGATAGAAACGACTCAGAGAATGAAAGAAGCAAGTATGA
TTGAGCGCTTCCAATGTGTGTATGTGA

protein sequence of jgi.p|Nanoce1779_2|169237

>mRNA_7806-protein ID=mRNA_7806-protein|Name=jgi.p|Nanoce1779_2|169237|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MPDNALIKKCLEEVCVRSALGRLPFLFILFDAFKYMGMEVFAPLPPWPTV
LKHWVLALAINDTLFYWTHRLMHHRLLYKHFHKKHHEFRVNISVNSEYAG
LVEVAMCDVLPTLAGCLLLGSHLLVMLGWTSFRVWETCAAHSGYAFPWCP
FTQLPFFNGPQMHDYHHSHNVGAYGAVTRFWDAWIGTDGHYHEHARRHPD
PCIPCKGRLVDVPLSHAALPSLHSIRSSAAAVSTWWEGGKEGKPRLVSCD
AGMFKSNSSSSMYSSGSSTSTDGDGFESSSEGNSDSNENISRRSSGKGEL
KGDLPSAITPHHSCVEENSGINDIDSSNNK*

mRNA from alignment at scaffold_21:376467..378292+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7806 ID=mRNA_7806|Name=jgi.p|Nanoce1779_2|169237|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at scaffold_21:376467..378292+ (Nannochloropsis oceanica)
GGTGTGTGTGTGTGTGTACCTGTGTATCTGTGTGGGTGTGTGAATGTGTG
AGTGTATGGGAGTTCATCTCGTGGCGGGAATAAGTAAAGGGAGGACCTCT
GACGGGAAAACGGACATAAGGTCAACCATATTAATTGATTTGTGCTTTCT
TCTCTTTCATCCCCACCCTTGCAGTTGGGCGTGTACCTCGTAAGCGAGCT
TTGGTACCTGTTCGTCGCGGGCTTTTACTACTTGTGCTGGGCACAAGACT
GGTTTCTCCGCTACCGCATTCAAAAACGAGCCACCATGCCTGATAACGCT
CTAATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCCCTCGGTCG
CCTACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACATGGGAATGG
AGGTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGCACTGGGTC
TTGGCCTTAGCCATAAATGACACACTATTCTACTGGACTCATAGACTGAT
GCATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCACGAGTTCA
GGGTAACGAAGGAGGGAGGGATTGAGGGAATCGTGTAGTCTCCTGCGTGG
TGGCCCTGCTGATCCCCCTCGTATCTCTTCGTATCCACCAAACGTTTAGA
ACTCACTATTTTATTGTGGTTTCCCACCTTTTTTCCCAGGTCAACATCTC
GGTCAACTCTGAGTACGCTGGACTGGTGGAAGTGGCGATGTGTGACGTCC
TCCCCACCCTCGCGGGCTGCCTCCTCCTTGGTTCCCACCTCCTTGTCATG
CTAGGTTGGACGAGCTTTCGCGTCTGGGAGACATGTGCAGCACACTCGGG
TTATGCTTTTCCGTGGTGTCCTTTCACGCAATTACCTTTTTTCAATGGTC
CGCAGATGTGAGTAGAGTGAGGGAGAAGGGAAGAGAAGGAGAGGTGGGAA
GGAGGTGAAGGTGGAGAGAGTTTTCTTTGTGTGAGATCATTTCGATCTAT
GCTTGGTTCGAATAGTAGCCGACCCATATCTTCCATTTCTTCGCCTTTTC
TCACATGTCTTCCGTCCAGGCATGATTACCACCACTCGCACAATGTTGGA
GCCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGGTACTGACGG
TCACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCATCCCTTGCA
AGGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTTCCCTCCCTC
CACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTGGGAGGGAGG
AAAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCATGTTCAAGA
GCAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACCAGCACCGAT
GGCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTCTAATGAAAA
CATTAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTGATTTGCCCA
GCGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGCGGCATCAAC
GATATAGATAGCAGCAACAACAAATGAATGTAAAGAGAGCATTGCAAGGA
AACTCAGAAATTGATAGCACCACGGCAGCACGGGCACAGAAAAAGGGAGG
CAAAAAAGGCAAAAAGTATTGATGTGAATGGCATGTAGTTGGTCATACCA
ACCAAAAAAAGAAAACACCGTGTGTACATGATTCCATAAGTGTGCTATCA
AAGCCCCTGCGGATAGAAACGACTCAGAGAATGAAAGAAGCAAGTATGAT
TGAGCGCTTCCAATGTGTGTATGTGA

Coding sequence (CDS) from alignment at scaffold_21:376467..378292+

>mRNA_7806 ID=mRNA_7806|Name=jgi.p|Nanoce1779_2|169237|organism=Nannochloropsis oceanica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_21:376467..378292+ (Nannochloropsis oceanica)
ATGCCTGATAACGCTCTAATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCG
ATCTGCCCTCGGTCGCCTACCTTTTCTATTCATCTTGTTTGATGCCTTCA
AGTACATGGGAATGGAGGTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTC
CTGAAGCACTGGGTCTTGGCCTTAGCCATAAATGACACACTATTCTACTG
GACTCATAGACTGATGCATCATCGATTGCTGTACAAACACTTTCACAAGA
AGCATCACGAGTTCAGGGTCAACATCTCGGTCAACTCTGAGTACGCTGGA
CTGGTGGAAGTGGCGATGTGTGACGTCCTCCCCACCCTCGCGGGCTGCCT
CCTCCTTGGTTCCCACCTCCTTGTCATGCTAGGTTGGACGAGCTTTCGCG
TCTGGGAGACATGTGCAGCACACTCGGGTTATGCTTTTCCGTGGTGTCCT
TTCACGCAATTACCTTTTTTCAATGGTCCGCAGATGCATGATTACCACCA
CTCGCACAATGTTGGAGCCTACGGTGCCGTGACGCGCTTCTGGGACGCCT
GGATAGGTACTGACGGTCACTATCATGAGCACGCACGCCGGCATCCAGAC
CCTTGCATCCCTTGCAAGGGACGCTTGGTGGACGTCCCTCTCAGCCACGC
CGCTCTTCCCTCCCTCCACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGA
CGTGGTGGGAGGGAGGAAAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGAT
GCCGGCATGTTCAAGAGCAATAGCAGTAGCAGTATGTATAGTAGTGGCAG
CAGTACCAGCACCGATGGCGATGGTTTTGAGAGCAGCAGTGAGGGTAACA
GTGATTCTAATGAAAACATTAGTCGCAGAAGCAGTGGCAAGGGGGAGTTG
AAAGGTGATTTGCCCAGCGCTATCACACCACACCATTCGTGTGTAGAAGA
AAATAGCGGCATCAACGATATAGATAGCAGCAACAACAAATGAATGCCTG
ATAACGCTCTAATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCC
CTCGGTCGCCTACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACAT
GGGAATGGAGGTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGC
ACTGGGTCTTGGCCTTAGCCATAAATGACACACTATTCTACTGGACTCAT
AGACTGATGCATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCA
CGAGTTCAGGGTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGG
AAGTGGCGATGTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTT
GGTTCCCACCTCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGA
GACATGTGCAGCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGC
AATTACCTTTTTTCAATGGTCCGCAGATGCATGATTACCACCACTCGCAC
AATGTTGGAGCCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGG
TACTGACGGTCACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCA
TCCCTTGCAAGGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTT
CCCTCCCTCCACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTG
GGAGGGAGGAAAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCA
TGTTCAAGAGCAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACC
AGCACCGATGGCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTC
TAATGAAAACATTAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTG
ATTTGCCCAGCGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGC
GGCATCAACGATATAGATAGCAGCAACAACAAATGAATGCCTGATAACGC
TCTAATCAAGAAGTGTCTGGAAGAGGTGTGCGTCCGATCTGCCCTCGGTC
GCCTACCTTTTCTATTCATCTTGTTTGATGCCTTCAAGTACATGGGAATG
GAGGTCTTTGCGCCGTTGCCGCCGTGGCCAACTGTCCTGAAGCACTGGGT
CTTGGCCTTAGCCATAAATGACACACTATTCTACTGGACTCATAGACTGA
TGCATCATCGATTGCTGTACAAACACTTTCACAAGAAGCATCACGAGTTC
AGGGTCAACATCTCGGTCAACTCTGAGTACGCTGGACTGGTGGAAGTGGC
GATGTGTGACGTCCTCCCCACCCTCGCGGGCTGCCTCCTCCTTGGTTCCC
ACCTCCTTGTCATGCTAGGTTGGACGAGCTTTCGCGTCTGGGAGACATGT
GCAGCACACTCGGGTTATGCTTTTCCGTGGTGTCCTTTCACGCAATTACC
TTTTTTCAATGGTCCGCAGATGCATGATTACCACCACTCGCACAATGTTG
GAGCCTACGGTGCCGTGACGCGCTTCTGGGACGCCTGGATAGGTACTGAC
GGTCACTATCATGAGCACGCACGCCGGCATCCAGACCCTTGCATCCCTTG
CAAGGGACGCTTGGTGGACGTCCCTCTCAGCCACGCCGCTCTTCCCTCCC
TCCACTCGATTCGGTCCTCGGCGGCGGCGGTGTCGACGTGGTGGGAGGGA
GGAAAGGAGGGTAAGCCAAGGTTGGTGAGTTGTGATGCCGGCATGTTCAA
GAGCAATAGCAGTAGCAGTATGTATAGTAGTGGCAGCAGTACCAGCACCG
ATGGCGATGGTTTTGAGAGCAGCAGTGAGGGTAACAGTGATTCTAATGAA
AACATTAGTCGCAGAAGCAGTGGCAAGGGGGAGTTGAAAGGTGATTTGCC
CAGCGCTATCACACCACACCATTCGTGTGTAGAAGAAAATAGCGGCATCA
ACGATATAGATAGCAGCAACAACAAATGA

Synonyms

Publications