jgi.p|Nanoce1779_2|600093, mRNA_7805 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600093
Unique NamemRNA_7805
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_21:374273..375725 +

Link to JBrowse

Properties
Property NameValue
TranscriptId600179
TrackFilteredModels2
ProteinId600093
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:374273..375725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600093gene_7805Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600093mRNA_7805-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7805CDS_7805Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7805 ID=mRNA_7805|Name=jgi.p|Nanoce1779_2|600093|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
CAGGAAGTCATGCCTCTCCGGACCGCCTTTGCCGGCAGCTGCAAGGCCGT
GGGTGCAGGCCTCGTCCAGAACGGCAGAAGTAACAAGGCGGCGGCGATGG
CATGTCAGATCGTGCCCCGCAAACTCTCTACTAGCACCGCAGGGAAAGAG
TCCTACACCGAACGGCAGGCCAGGACTGGCCGTCCGGTCTCCCCCCACGT
GACTATTTACAAATTCCCCATTGGTGCCTTGACGTCCATCGCTACGCGTG
TTACTGGCGGAGCATTAACCGTAGGGTTGACAGGCATATCGTTGGTTGCG
TTGGGAGGAGGAGACGTCCCGGCCCTTATGAGCAGCCTGGGCAACTCCAT
GGTGGGCGTCCCAGCCAAGGTGTTGTTTTCGTTTCCCCTGATTTACCACT
ATGGATCGGGGTTGCGACATTATCTGTGGGACCACAACCCCAACATGTTG
GATAACCGCGGCGTGTCCGAAGCCTCCTACATCCTCCTTGGGGCCACCGT
TGCCGCCTCCCTAGCCGCAGGCTTTGTAACTTTGAGCGCATCGCCTGATG
TTGTAGAGAAGAAGAAGTAGAGGGAGCGACTGTGATGGAGAAGGAATAAA
GGAGGGAATGAAGGGGGGGCTTGGACGGAGCAGAAAAATGTAAAAGAAGG
GAAGAAAAGAAGGAAGCAGATATTTTCACATCTGATTTTTGGTGAGGAGG
GAAGAAGAAAGGGTGGAAACCCAGTTAAAAAAGAAAAAAAAGGCAGACAG
ACGGAAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|600093

>mRNA_7805-protein ID=mRNA_7805-protein|Name=jgi.p|Nanoce1779_2|600093|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MPLRTAFAGSCKAVGAGLVQNGRSNKAAAMACQIVPRKLSTSTAGKESYT
ERQARTGRPVSPHVTIYKFPIGALTSIATRVTGGALTVGLTGISLVALGG
GDVPALMSSLGNSMVGVPAKVLFSFPLIYHYGSGLRHYLWDHNPNMLDNR
GVSEASYILLGATVAASLAAGFVTLSASPDVVEKKK*
back to top

mRNA from alignment at scaffold_21:374273..375725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7805 ID=mRNA_7805|Name=jgi.p|Nanoce1779_2|600093|organism=Nannochloropsis oceanica|type=mRNA|length=1453bp|location=Sequence derived from alignment at scaffold_21:374273..375725+ (Nannochloropsis oceanica)
CAGGAAGTCATGCCTCTCCGGACCGCCTTTGCCGGCAGCTGCAAGGCCGT
GGGTGCAGGCCTCGTCCAGAACGGCAGAAGTAACAAGGCGGCGGCGATGG
CATGTCAGGTAAAAAGGGCAGGGAGAGGGGTCTAGCGCGCATGCATGTGG
ACTGGACATGAGGGACATGAACGTTGGCGCACGGGAAAAGCGAGAAACTA
GATGCATGTGCGGTGGTGCAGGGCATGCGATGCTGCAAGACCACAGCTAA
TGCTGTCTCTAGAACTCTTGCCCATGTGATCATCAAGTTCAGCCATCGAG
CAAAGCGACGGCACCTCCACCACCGCCATCTCACAAGCACACCATGATGC
CCTGTCATGCTCCTCGACACTTAACTCGCCCTTTGGTTATGCGAACCTTG
GTTCCTCCCATCCTCTCCTCCTGCCCATTCTTGTCATCCTCAACAAACTC
GCTGATACAACCCACCACCCTCCCTCCACCACCAACGTAGATCGTGCCCC
GCAAACTCTCTACTAGCACCGCAGGGAAAGAGTCCTACACCGAACGGCAG
GCCAGGACTGGTACGTCATTGTTTTCTGTTTGTGTTCGCTACCTGGTTAT
TCAGCAGTCGCTTTATCAACACTTCCCCTGACATTTCTCTCCCTGTCCCT
CCCTCTCTCCCTCCGCTCCCCCTCCTTCCAAAGGCCGTCCGGTCTCCCCC
CACGTGACTATTTACAAATTCCCCATTGGTGCCTTGACGTCCATCGCTAC
GCGTGTTACTGGCGGAGCATTAACCGTAGGGTTGACAGGCATATCGTTGG
TTGCGTTGGGAGGAGGAGACGTCCCGGCCCTTATGAGCAGCCTGGGCAAC
TCCATGGTGGGCGTCCCAGCCAAGGTGTTGTTTTCGTTTCCCCTGATTTA
CCACTATGGATCGGGGTTGCGACATTATGTAAGCTTGAGAGGGAGGGACA
GAGGGGTATGAGTGGGTTTTGAGCTCTTGTGACGCGCTGCGGTATTTCAT
GGTGCTTCCCTCCTGATGTTTTCATCAGTCTTGTATATTTATTTTTAATC
GACACGACGACATTCATGCTCACCCTCTCTTTTTCACCCTTCCCCTCTCT
CTCCGTTCCTTCCTTCAGCTGTGGGACCACAACCCCAACATGTTGGATAA
CCGCGGCGTGTCCGAAGCCTCCTACATCCTCCTTGGGGCCACCGTTGCCG
CCTCCCTAGCCGCAGGCTTTGTAACTTTGAGCGCATCGCCTGATGTTGTA
GAGAAGAAGAAGTAGAGGGAGCGACTGTGATGGAGAAGGAATAAAGGAGG
GAATGAAGGGGGGGCTTGGACGGAGCAGAAAAATGTAAAAGAAGGGAAGA
AAAGAAGGAAGCAGATATTTTCACATCTGATTTTTGGTGAGGAGGGAAGA
AGAAAGGGTGGAAACCCAGTTAAAAAAGAAAAAAAAGGCAGACAGACGGA
AGA
back to top

Coding sequence (CDS) from alignment at scaffold_21:374273..375725+

>mRNA_7805 ID=mRNA_7805|Name=jgi.p|Nanoce1779_2|600093|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_21:374273..375725+ (Nannochloropsis oceanica)
ATGCCTCTCCGGACCGCCTTTGCCGGCAGCTGCAAGGCCGTGGGTGCAGG
CCTCGTCCAGAACGGCAGAAGTAACAAGGCGGCGGCGATGGCATGTCAGA
TCGTGCCCCGCAAACTCTCTACTAGCACCGCAGGGAAAGAGTCCTACACC
GAACGGCAGGCCAGGACTGGCCGTCCGGTCTCCCCCCACGTGACTATTTA
CAAATTCCCCATTGGTGCCTTGACGTCCATCGCTACGCGTGTTACTGGCG
GAGCATTAACCGTAGGGTTGACAGGCATATCGTTGGTTGCGTTGGGAGGA
GGAGACGTCCCGGCCCTTATGAGCAGCCTGGGCAACTCCATGGTGGGCGT
CCCAGCCAAGGTGTTGTTTTCGTTTCCCCTGATTTACCACTATGGATCGG
GGTTGCGACATTATCTGTGGGACCACAACCCCAACATGTTGGATAACCGC
GGCGTGTCCGAAGCCTCCTACATCCTCCTTGGGGCCACCGTTGCCGCCTC
CCTAGCCGCAGGCTTTGTAACTTTGAGCGCATCGCCTGATGTTGTAGAGA
AGAAGAAGTAGATGCCTCTCCGGACCGCCTTTGCCGGCAGCTGCAAGGCC
GTGGGTGCAGGCCTCGTCCAGAACGGCAGAAGTAACAAGGCGGCGGCGAT
GGCATGTCAGATCGTGCCCCGCAAACTCTCTACTAGCACCGCAGGGAAAG
AGTCCTACACCGAACGGCAGGCCAGGACTGGCCGTCCGGTCTCCCCCCAC
GTGACTATTTACAAATTCCCCATTGGTGCCTTGACGTCCATCGCTACGCG
TGTTACTGGCGGAGCATTAACCGTAGGGTTGACAGGCATATCGTTGGTTG
CGTTGGGAGGAGGAGACGTCCCGGCCCTTATGAGCAGCCTGGGCAACTCC
ATGGTGGGCGTCCCAGCCAAGGTGTTGTTTTCGTTTCCCCTGATTTACCA
CTATGGATCGGGGTTGCGACATTATCTGTGGGACCACAACCCCAACATGT
TGGATAACCGCGGCGTGTCCGAAGCCTCCTACATCCTCCTTGGGGCCACC
GTTGCCGCCTCCCTAGCCGCAGGCTTTGTAACTTTGAGCGCATCGCCTGA
TGTTGTAGAGAAGAAGAAGTAGATGCCTCTCCGGACCGCCTTTGCCGGCA
GCTGCAAGGCCGTGGGTGCAGGCCTCGTCCAGAACGGCAGAAGTAACAAG
GCGGCGGCGATGGCATGTCAGATCGTGCCCCGCAAACTCTCTACTAGCAC
CGCAGGGAAAGAGTCCTACACCGAACGGCAGGCCAGGACTGGCCGTCCGG
TCTCCCCCCACGTGACTATTTACAAATTCCCCATTGGTGCCTTGACGTCC
ATCGCTACGCGTGTTACTGGCGGAGCATTAACCGTAGGGTTGACAGGCAT
ATCGTTGGTTGCGTTGGGAGGAGGAGACGTCCCGGCCCTTATGAGCAGCC
TGGGCAACTCCATGGTGGGCGTCCCAGCCAAGGTGTTGTTTTCGTTTCCC
CTGATTTACCACTATGGATCGGGGTTGCGACATTATCTGTGGGACCACAA
CCCCAACATGTTGGATAACCGCGGCGTGTCCGAAGCCTCCTACATCCTCC
TTGGGGCCACCGTTGCCGCCTCCCTAGCCGCAGGCTTTGTAACTTTGAGC
GCATCGCCTGATGTTGTAGAGAAGAAGAAGTAGATGCCTCTCCGGACCGC
CTTTGCCGGCAGCTGCAAGGCCGTGGGTGCAGGCCTCGTCCAGAACGGCA
GAAGTAACAAGGCGGCGGCGATGGCATGTCAGATCGTGCCCCGCAAACTC
TCTACTAGCACCGCAGGGAAAGAGTCCTACACCGAACGGCAGGCCAGGAC
TGGCCGTCCGGTCTCCCCCCACGTGACTATTTACAAATTCCCCATTGGTG
CCTTGACGTCCATCGCTACGCGTGTTACTGGCGGAGCATTAACCGTAGGG
TTGACAGGCATATCGTTGGTTGCGTTGGGAGGAGGAGACGTCCCGGCCCT
TATGAGCAGCCTGGGCAACTCCATGGTGGGCGTCCCAGCCAAGGTGTTGT
TTTCGTTTCCCCTGATTTACCACTATGGATCGGGGTTGCGACATTATCTG
TGGGACCACAACCCCAACATGTTGGATAACCGCGGCGTGTCCGAAGCCTC
CTACATCCTCCTTGGGGCCACCGTTGCCGCCTCCCTAGCCGCAGGCTTTG
TAACTTTGAGCGCATCGCCTGATGTTGTAGAGAAGAAGAAGTAG
back to top
Synonyms
Publications