jgi.p|Nanoce1779_2|600088, mRNA_7804 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600088
Unique NamemRNA_7804
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1462
Alignment locationscaffold_21:372404..373865 -

Link to JBrowse

Properties
Property NameValue
TranscriptId600174
TrackFilteredModels2
ProteinId600088
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:372404..373865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600088gene_7804Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600088mRNA_7804-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7804CDS_7804Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7804 ID=mRNA_7804|Name=jgi.p|Nanoce1779_2|600088|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp
ACGTAAGGCATGGATGGGCAGCTAATCCAGAAGAAGGACTGCTCGGCTGC
GGTGGCAACGGCGTTGCCGGAGGCCAAGTCGTTGGCGGACGCCGGCAAGC
TGGCCGAGGCTGTGGAGCTGCTGCTAGGCATTGAGAAGCAAGCGCGTATG
GGCAATGACGTGACCAGTCTAAAGGAAGTGGTGCTGCAGACGGTGCGGCT
GGTGCGGGAGCATAATGATTGGGAACAGTTGAACGCGACATTGACGCAGC
TGAGCAAGCGGCGGTCGCAGAACAAGGCGGCCATCACTGCTATGGTACAA
GAAGCAATGGGACCTTCCTATGTGGATGCTGCCCCCGACGCCGACACCAA
GAAGAAGCTCATTACTACGTTGCGTGACATAACGGACGGCAAGATCTTCG
TGGAAGCGGAACGGGCGCGCTTGACTCGGACGTTGGCGGCCTTGCTTGAG
GCAGAGGGGAAAGTGGGGGAGGCGTGTGATATAATTCAGGATGTGCATGT
GGAGACTTATGGGTCCTTGGACAAGGAGGAAAAGCTTGATTTTATCTTGG
AACAGATTCGACTGACGCTGGCTAAGAAGGATTTCGTCAGGACATATATT
ATTGCGAAGAAGGTAACGAAGAAGCTTTTGGATGGGGAGGACCCTGCGTT
GCAGGCACTGAAGCTCAAGTTCTACCGATTGATGATAGAGTACCATTCGC
TGGCGGAGAAGGAGGCGTTTGAAATCGCCCAGCATTATCATTCCATTTAT
AACACGCCTGTGGTGAGGGCGGAGGAGACCCAGTGGAAGGAGGCGTTGAG
CAGCTGCGTCTTGTTCTTGATAATCGCACCCCATTCGAACCAGCAGTCCG
ACATGCTGCACCGCCTCGTCTCCGAAGAAGAAGACCGCCTTGCCGATCTT
CCCGTCTACAAAGAGATCCTTAAGACCTACACGACCAAAGAAATTATCCT
TTACCCCTTGCCGCAGCTCCCCGAGATTGAAGTCCACCCTGCTTTGAATC
AGTACGGTCCTGAGCTCGCCAAGCACTGGCTTGCCCAGTTGCGCACGCGT
GTGATTCAACACAACATCCGGGTATTGTCTGGCTACTACAAGAAGATCCG
TTTGACACGCGCGGCGGAGTTGCTTTCGTTGGCCGTGCCGGAGTTGGAGA
CGAATATCGCGACGCTCGTAAGTGAGGGCAGCATGTATGCCCGTGTGGAT
CGGCCGGCGAATCAGGTGTGTTTTGCCCCGCCTAAGGTGGCAGAGGAAGC
CTTGTCGGATTGGGCAGCGGATATTTCGGAATTGTTACACTTAGTGGAAC
GGACGACGCATTTGATTAGTAAGGAGATGATGATTCATAAGGTGGTTTAG
GGGGAGGGAGGGAGGGTTTGGTTGGAAGGTGGTTGAAGGAGGGGGAAAGG
AGATGTACGAGGGTAGAGAATACATGACAAGAAAATACGGAACGAAACGA
TACGAACGTGGT
back to top

protein sequence of jgi.p|Nanoce1779_2|600088

>mRNA_7804-protein ID=mRNA_7804-protein|Name=jgi.p|Nanoce1779_2|600088|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDGQLIQKKDCSAAVATALPEAKSLADAGKLAEAVELLLGIEKQARMGND
VTSLKEVVLQTVRLVREHNDWEQLNATLTQLSKRRSQNKAAITAMVQEAM
GPSYVDAAPDADTKKKLITTLRDITDGKIFVEAERARLTRTLAALLEAEG
KVGEACDIIQDVHVETYGSLDKEEKLDFILEQIRLTLAKKDFVRTYIIAK
KVTKKLLDGEDPALQALKLKFYRLMIEYHSLAEKEAFEIAQHYHSIYNTP
VVRAEETQWKEALSSCVLFLIIAPHSNQQSDMLHRLVSEEEDRLADLPVY
KEILKTYTTKEIILYPLPQLPEIEVHPALNQYGPELAKHWLAQLRTRVIQ
HNIRVLSGYYKKIRLTRAAELLSLAVPELETNIATLVSEGSMYARVDRPA
NQVCFAPPKVAEEALSDWAADISELLHLVERTTHLISKEMMIHKVV*
back to top

mRNA from alignment at scaffold_21:372404..373865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7804 ID=mRNA_7804|Name=jgi.p|Nanoce1779_2|600088|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp|location=Sequence derived from alignment at scaffold_21:372404..373865- (Nannochloropsis oceanica)
ACGTAAGGCATGGATGGGCAGCTAATCCAGAAGAAGGACTGCTCGGCTGC
GGTGGCAACGGCGTTGCCGGAGGCCAAGTCGTTGGCGGACGCCGGCAAGC
TGGCCGAGGCTGTGGAGCTGCTGCTAGGCATTGAGAAGCAAGCGCGTATG
GGCAATGACGTGACCAGTCTAAAGGAAGTGGTGCTGCAGACGGTGCGGCT
GGTGCGGGAGCATAATGATTGGGAACAGTTGAACGCGACATTGACGCAGC
TGAGCAAGCGGCGGTCGCAGAACAAGGCGGCCATCACTGCTATGGTACAA
GAAGCAATGGGACCTTCCTATGTGGATGCTGCCCCCGACGCCGACACCAA
GAAGAAGCTCATTACTACGTTGCGTGACATAACGGACGGCAAGATCTTCG
TGGAAGCGGAACGGGCGCGCTTGACTCGGACGTTGGCGGCCTTGCTTGAG
GCAGAGGGGAAAGTGGGGGAGGCGTGTGATATAATTCAGGATGTGCATGT
GGAGACTTATGGGTCCTTGGACAAGGAGGAAAAGCTTGATTTTATCTTGG
AACAGATTCGACTGACGCTGGCTAAGAAGGATTTCGTCAGGACATATATT
ATTGCGAAGAAGGTAACGAAGAAGCTTTTGGATGGGGAGGACCCTGCGTT
GCAGGCACTGAAGCTCAAGTTCTACCGATTGATGATAGAGTACCATTCGC
TGGCGGAGAAGGAGGCGTTTGAAATCGCCCAGCATTATCATTCCATTTAT
AACACGCCTGTGGTGAGGGCGGAGGAGACCCAGTGGAAGGAGGCGTTGAG
CAGCTGCGTCTTGTTCTTGATAATCGCACCCCATTCGAACCAGCAGTCCG
ACATGCTGCACCGCCTCGTCTCCGAAGAAGAAGACCGCCTTGCCGATCTT
CCCGTCTACAAAGAGATCCTTAAGACCTACACGACCAAAGAAATTATCCT
TTACCCCTTGCCGCAGCTCCCCGAGATTGAAGTCCACCCTGCTTTGAATC
AGTACGGTCCTGAGCTCGCCAAGCACTGGCTTGCCCAGTTGCGCACGCGT
GTGATTCAACACAACATCCGGGTATTGTCTGGCTACTACAAGAAGATCCG
TTTGACACGCGCGGCGGAGTTGCTTTCGTTGGCCGTGCCGGAGTTGGAGA
CGAATATCGCGACGCTCGTAAGTGAGGGCAGCATGTATGCCCGTGTGGAT
CGGCCGGCGAATCAGGTGTGTTTTGCCCCGCCTAAGGTGGCAGAGGAAGC
CTTGTCGGATTGGGCAGCGGATATTTCGGAATTGTTACACTTAGTGGAAC
GGACGACGCATTTGATTAGTAAGGAGATGATGATTCATAAGGTGGTTTAG
GGGGAGGGAGGGAGGGTTTGGTTGGAAGGTGGTTGAAGGAGGGGGAAAGG
AGATGTACGAGGGTAGAGAATACATGACAAGAAAATACGGAACGAAACGA
TACGAACGTGGT
back to top

Coding sequence (CDS) from alignment at scaffold_21:372404..373865-

>mRNA_7804 ID=mRNA_7804|Name=jgi.p|Nanoce1779_2|600088|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_21:372404..373865- (Nannochloropsis oceanica)
ATGGATGGGCAGCTAATCCAGAAGAAGGACTGCTCGGCTGCGGTGGCAAC
GGCGTTGCCGGAGGCCAAGTCGTTGGCGGACGCCGGCAAGCTGGCCGAGG
CTGTGGAGCTGCTGCTAGGCATTGAGAAGCAAGCGCGTATGGGCAATGAC
GTGACCAGTCTAAAGGAAGTGGTGCTGCAGACGGTGCGGCTGGTGCGGGA
GCATAATGATTGGGAACAGTTGAACGCGACATTGACGCAGCTGAGCAAGC
GGCGGTCGCAGAACAAGGCGGCCATCACTGCTATGGTACAAGAAGCAATG
GGACCTTCCTATGTGGATGCTGCCCCCGACGCCGACACCAAGAAGAAGCT
CATTACTACGTTGCGTGACATAACGGACGGCAAGATCTTCGTGGAAGCGG
AACGGGCGCGCTTGACTCGGACGTTGGCGGCCTTGCTTGAGGCAGAGGGG
AAAGTGGGGGAGGCGTGTGATATAATTCAGGATGTGCATGTGGAGACTTA
TGGGTCCTTGGACAAGGAGGAAAAGCTTGATTTTATCTTGGAACAGATTC
GACTGACGCTGGCTAAGAAGGATTTCGTCAGGACATATATTATTGCGAAG
AAGGTAACGAAGAAGCTTTTGGATGGGGAGGACCCTGCGTTGCAGGCACT
GAAGCTCAAGTTCTACCGATTGATGATAGAGTACCATTCGCTGGCGGAGA
AGGAGGCGTTTGAAATCGCCCAGCATTATCATTCCATTTATAACACGCCT
GTGGTGAGGGCGGAGGAGACCCAGTGGAAGGAGGCGTTGAGCAGCTGCGT
CTTGTTCTTGATAATCGCACCCCATTCGAACCAGCAGTCCGACATGCTGC
ACCGCCTCGTCTCCGAAGAAGAAGACCGCCTTGCCGATCTTCCCGTCTAC
AAAGAGATCCTTAAGACCTACACGACCAAAGAAATTATCCTTTACCCCTT
GCCGCAGCTCCCCGAGATTGAAGTCCACCCTGCTTTGAATCAGTACGGTC
CTGAGCTCGCCAAGCACTGGCTTGCCCAGTTGCGCACGCGTGTGATTCAA
CACAACATCCGGGTATTGTCTGGCTACTACAAGAAGATCCGTTTGACACG
CGCGGCGGAGTTGCTTTCGTTGGCCGTGCCGGAGTTGGAGACGAATATCG
CGACGCTCGTAAGTGAGGGCAGCATGTATGCCCGTGTGGATCGGCCGGCG
AATCAGGTGTGTTTTGCCCCGCCTAAGGTGGCAGAGGAAGCCTTGTCGGA
TTGGGCAGCGGATATTTCGGAATTGTTACACTTAGTGGAACGGACGACGC
ATTTGATTAGTAAGGAGATGATGATTCATAAGGTGGTTTAG
back to top
Synonyms
Publications