jgi.p|Nanoce1779_2|600087, mRNA_7803 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600087
Unique Name	mRNA_7803
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2381
Alignment location	scaffold_21:370010..372390 +

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Properties


Property Name	Value
TranscriptId	600173
Track	FilteredModels2
ProteinId	600087

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:370010..372390 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600087	gene_7803	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600087	mRNA_7803-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7803	CDS_7803	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:370010..372390+
coding sequence from alignment at scaffold_21:370010..372390+

mRNA sequence

>mRNA_7803 ID=mRNA_7803|Name=jgi.p|Nanoce1779_2|600087|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
AGCCAGGGAAAAATGGTCGTCGTAGCCAACATGAACGCGGATGGAAAGAG
TATTGGCAGCAGCAGCAGCGCGGGCGTCGTTGCAGTTCCCAAGGCGGTGG
AAGAGGCATTTGGGGTTGAGGACGAGGAGATCCCGACTACCACCGCCACC
GGAAGCAAGATGGCCACGATCACGGCTACGACACAACAAGCCAACACGTC
GAGCAAGAAAAAGAAGAAGGGTCAGCAGCAGCAGCAGCAGCTGCAGCTGC
AAGGCACGGCGGGCTCGGACACCAACAAAGAGAAAGCCAAAGCCGTCGCA
GCAAAAGCGCCTCCGGAGGACAGCTGCAATAAGACGGACAAGAAGGATAC
CACTGCTGCCACCGCTGCCGCCACCACTAGCAACGTCGTCAAGCCAGTAC
AGGCCTCACTAGTGTCACAGAAGTCATCCCATACTTCTTCTTCACAACCC
CAGCAATCCCAGCTGCGCCTCCTGCCGTTCCAGCCTTACGCCGGCATACC
TCCCTTCAACCAGCTCCGCGACACAAACCTGCAAGACTGGCCTCCGGGAC
GTGGATTAACCTTCATTCGTCCTTGCCCTAGCGGCACGTCCTCCCTAGAG
AAGCTGGGAATGCTCAAAAACTGCCCTCAGATTCTGGCGTACATCCAGTC
TTTTTCCGGGGCGGATTGGATGGAGGCGACCTTTACCCCGCACCCTTGCA
TCCGGATAACGGCCACGACGCAGATGCCGGGGGGTAAATCAACAGCGGAA
GCAATTCTGAGGTTATCCGATGAAATGATTTTGCAATGGTTGCATCGGTT
TGATCCGCAAGTGCCGATTTGGGCCATGTTTGTGTGCCCTGCAATGCTTT
CCGGATTAATGGTGGGAAAGCAGGCGTTGAATCTTAAGAAAATCGAGGAG
ATTTCGATGGCCAGGGTATGGGCGGCACCGAGGGATGTGGAAGCACAGTA
CGTGAGCTTTTTCATTTGTAGTAATAATTATGAGGCGACCCGTGAGGCCT
ATGCAATGTTAGAGAGCCGTGCGCACAACCAGATGGAGATGGCCATGGCT
ACGAATATGCATCAGCAGCAGCACATGCCGGCCACGAAGGCCACAGCGGG
TCCCGTGCGCATTCAGAAGCCCTCTTCCGCTACCTCTTCCTCCTCTGTCG
CAGCGACGTCTGGAGACATAGCAAAGAAAAACGTCATGACGCCAGTCTCG
TCCCCTTCTTCCATTTCCTCCTGCTCCGATGACGATTCCTCGTCGACTGA
CACCGAAGCCTCTACGCAGCAGCCCTCAAGGGATAGTACTCCACCTGCCA
CGCATGCCACCAAGAAGCCGACCCACTCGTCCTCTGCGTCCTCCTCCTCA
TCCCTGGCCTCTACGACTACGACAAAGGGTAGCGACAGCCGCAGCACCAG
CAGCACCAGCACCAGCAGTGATGAGAATATTAAGTCGGATGAAGTTACAA
GCGGCGTGAAGGCTAACCATCAGAGCGCAACTCCTACAAAGAAAGAGTTG
GATAAGAAGTAGAAAAAGGACAAGAGAGACAAAAGAAGGGAGGAGCGAAG
TGTGAGGTATGGAAAAGGGATGAGATCTTATTAATGCACATCTTGCGTTT
TATTTTATCCATTTCGGATCTTGGCATTCAGTTTTTTGGGGGGGTTCACA
TTCTAATTTCATATTTTGTAACGTGATTATTGGACGTTGGTAGATAAGCG
TAAAAGAAGACAAAAAGAGGGGTTACGTAGATGATTTTGAAAGGATACGC
AACAAGAGAATAGAGATGAGAAAGACAAACGAGGAGGCGATATTTAAAGG
AGAGAAAAAAAAGGGCGACGGCCATGACATCGACTTTGTCAAACAGGAAG
AGGGAATACATGCATATACGAAGCGGGGTAGAAAGCTTCTGTATTCACAG
TAACACAGAGTGAGAGAATAGAAGAGGGACAAAACGAAATGTAGAAAGAC
GAAAGACAGCAAGAGCGCTATGTCTACCGCGAAGCGCGAGTAAGTGGCGC
CCCCCGAAACAAAACACGCGGACGTCTGAGGGCAACTTCCCTTTTTGGGA
CTCGGAAAAGGGATCAACTTTTGATCGGAATGCCTCCTTATGAAGTCATC
TCATTTTTTTATATTGGTATGTTTCTGTTGTCCATTTTTATCATTTTTTG
CGCAACTTAAGCTATGATCTAATAAGGAAAAGAAGGAAAAGGAGCAAGAC
AAGGGAGAAGGAAGAGAGAAAACATAAGGTCACGACAAGAGAATCCAGAT
ACCTCTGCAAGAAATTTTCAACAAAACAGGAGTAGTATCGACGACTTAGG
AGGATGATACAAACAACCAAACATGGAAAAAACTTGAGTAAACACACATA
AATCTTTTTAAAACCAAAACAACCGATTAAA

protein sequence of jgi.p|Nanoce1779_2|600087

>mRNA_7803-protein ID=mRNA_7803-protein|Name=jgi.p|Nanoce1779_2|600087|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MVVVANMNADGKSIGSSSSAGVVAVPKAVEEAFGVEDEEIPTTTATGSKM
ATITATTQQANTSSKKKKKGQQQQQQLQLQGTAGSDTNKEKAKAVAAKAP
PEDSCNKTDKKDTTAATAAATTSNVVKPVQASLVSQKSSHTSSSQPQQSQ
LRLLPFQPYAGIPPFNQLRDTNLQDWPPGRGLTFIRPCPSGTSSLEKLGM
LKNCPQILAYIQSFSGADWMEATFTPHPCIRITATTQMPGGKSTAEAILR
LSDEMILQWLHRFDPQVPIWAMFVCPAMLSGLMVGKQALNLKKIEEISMA
RVWAAPRDVEAQYVSFFICSNNYEATREAYAMLESRAHNQMEMAMATNMH
QQQHMPATKATAGPVRIQKPSSATSSSSVAATSGDIAKKNVMTPVSSPSS
ISSCSDDDSSSTDTEASTQQPSRDSTPPATHATKKPTHSSSASSSSSLAS
TTTTKGSDSRSTSSTSTSSDENIKSDEVTSGVKANHQSATPTKKELDKK*

mRNA from alignment at scaffold_21:370010..372390+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7803 ID=mRNA_7803|Name=jgi.p|Nanoce1779_2|600087|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at scaffold_21:370010..372390+ (Nannochloropsis oceanica)
AGCCAGGGAAAAATGGTCGTCGTAGCCAACATGAACGCGGATGGAAAGAG
TATTGGCAGCAGCAGCAGCGCGGGCGTCGTTGCAGTTCCCAAGGCGGTGG
AAGAGGCATTTGGGGTTGAGGACGAGGAGATCCCGACTACCACCGCCACC
GGAAGCAAGATGGCCACGATCACGGCTACGACACAACAAGCCAACACGTC
GAGCAAGAAAAAGAAGAAGGGTCAGCAGCAGCAGCAGCAGCTGCAGCTGC
AAGGCACGGCGGGCTCGGACACCAACAAAGAGAAAGCCAAAGCCGTCGCA
GCAAAAGCGCCTCCGGAGGACAGCTGCAATAAGACGGACAAGAAGGATAC
CACTGCTGCCACCGCTGCCGCCACCACTAGCAACGTCGTCAAGCCAGTAC
AGGCCTCACTAGTGTCACAGAAGTCATCCCATACTTCTTCTTCACAACCC
CAGCAATCCCAGCTGCGCCTCCTGCCGTTCCAGCCTTACGCCGGCATACC
TCCCTTCAACCAGCTCCGCGACACAAACCTGCAAGACTGGCCTCCGGGAC
GTGGATTAACCTTCATTCGTCCTTGCCCTAGCGGCACGTCCTCCCTAGAG
AAGCTGGGAATGCTCAAAAACTGCCCTCAGATTCTGGCGTACATCCAGTC
TTTTTCCGGGGCGGATTGGATGGAGGCGACCTTTACCCCGCACCCTTGCA
TCCGGATAACGGCCACGACGCAGATGCCGGGGGGTAAATCAACAGCGGAA
GCAATTCTGAGGTTATCCGATGAAATGATTTTGCAATGGTTGCATCGGTT
TGATCCGCAAGTGCCGATTTGGGCCATGTTTGTGTGCCCTGCAATGCTTT
CCGGATTAATGGTGGGAAAGCAGGCGTTGAATCTTAAGAAAATCGAGGAG
ATTTCGATGGCCAGGGTATGGGCGGCACCGAGGGATGTGGAAGCACAGTA
CGTGAGCTTTTTCATTTGTAGTAATAATTATGAGGCGACCCGTGAGGCCT
ATGCAATGTTAGAGAGCCGTGCGCACAACCAGATGGAGATGGCCATGGCT
ACGAATATGCATCAGCAGCAGCACATGCCGGCCACGAAGGCCACAGCGGG
TCCCGTGCGCATTCAGAAGCCCTCTTCCGCTACCTCTTCCTCCTCTGTCG
CAGCGACGTCTGGAGACATAGCAAAGAAAAACGTCATGACGCCAGTCTCG
TCCCCTTCTTCCATTTCCTCCTGCTCCGATGACGATTCCTCGTCGACTGA
CACCGAAGCCTCTACGCAGCAGCCCTCAAGGGATAGTACTCCACCTGCCA
CGCATGCCACCAAGAAGCCGACCCACTCGTCCTCTGCGTCCTCCTCCTCA
TCCCTGGCCTCTACGACTACGACAAAGGGTAGCGACAGCCGCAGCACCAG
CAGCACCAGCACCAGCAGTGATGAGAATATTAAGTCGGATGAAGTTACAA
GCGGCGTGAAGGCTAACCATCAGAGCGCAACTCCTACAAAGAAAGAGTTG
GATAAGAAGTAGAAAAAGGACAAGAGAGACAAAAGAAGGGAGGAGCGAAG
TGTGAGGTATGGAAAAGGGATGAGATCTTATTAATGCACATCTTGCGTTT
TATTTTATCCATTTCGGATCTTGGCATTCAGTTTTTTGGGGGGGTTCACA
TTCTAATTTCATATTTTGTAACGTGATTATTGGACGTTGGTAGATAAGCG
TAAAAGAAGACAAAAAGAGGGGTTACGTAGATGATTTTGAAAGGATACGC
AACAAGAGAATAGAGATGAGAAAGACAAACGAGGAGGCGATATTTAAAGG
AGAGAAAAAAAAGGGCGACGGCCATGACATCGACTTTGTCAAACAGGAAG
AGGGAATACATGCATATACGAAGCGGGGTAGAAAGCTTCTGTATTCACAG
TAACACAGAGTGAGAGAATAGAAGAGGGACAAAACGAAATGTAGAAAGAC
GAAAGACAGCAAGAGCGCTATGTCTACCGCGAAGCGCGAGTAAGTGGCGC
CCCCCGAAACAAAACACGCGGACGTCTGAGGGCAACTTCCCTTTTTGGGA
CTCGGAAAAGGGATCAACTTTTGATCGGAATGCCTCCTTATGAAGTCATC
TCATTTTTTTATATTGGTATGTTTCTGTTGTCCATTTTTATCATTTTTTG
CGCAACTTAAGCTATGATCTAATAAGGAAAAGAAGGAAAAGGAGCAAGAC
AAGGGAGAAGGAAGAGAGAAAACATAAGGTCACGACAAGAGAATCCAGAT
ACCTCTGCAAGAAATTTTCAACAAAACAGGAGTAGTATCGACGACTTAGG
AGGATGATACAAACAACCAAACATGGAAAAAACTTGAGTAAACACACATA
AATCTTTTTAAAACCAAAACAACCGATTAAA

Coding sequence (CDS) from alignment at scaffold_21:370010..372390+

>mRNA_7803 ID=mRNA_7803|Name=jgi.p|Nanoce1779_2|600087|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_21:370010..372390+ (Nannochloropsis oceanica)
ATGGTCGTCGTAGCCAACATGAACGCGGATGGAAAGAGTATTGGCAGCAG
CAGCAGCGCGGGCGTCGTTGCAGTTCCCAAGGCGGTGGAAGAGGCATTTG
GGGTTGAGGACGAGGAGATCCCGACTACCACCGCCACCGGAAGCAAGATG
GCCACGATCACGGCTACGACACAACAAGCCAACACGTCGAGCAAGAAAAA
GAAGAAGGGTCAGCAGCAGCAGCAGCAGCTGCAGCTGCAAGGCACGGCGG
GCTCGGACACCAACAAAGAGAAAGCCAAAGCCGTCGCAGCAAAAGCGCCT
CCGGAGGACAGCTGCAATAAGACGGACAAGAAGGATACCACTGCTGCCAC
CGCTGCCGCCACCACTAGCAACGTCGTCAAGCCAGTACAGGCCTCACTAG
TGTCACAGAAGTCATCCCATACTTCTTCTTCACAACCCCAGCAATCCCAG
CTGCGCCTCCTGCCGTTCCAGCCTTACGCCGGCATACCTCCCTTCAACCA
GCTCCGCGACACAAACCTGCAAGACTGGCCTCCGGGACGTGGATTAACCT
TCATTCGTCCTTGCCCTAGCGGCACGTCCTCCCTAGAGAAGCTGGGAATG
CTCAAAAACTGCCCTCAGATTCTGGCGTACATCCAGTCTTTTTCCGGGGC
GGATTGGATGGAGGCGACCTTTACCCCGCACCCTTGCATCCGGATAACGG
CCACGACGCAGATGCCGGGGGGTAAATCAACAGCGGAAGCAATTCTGAGG
TTATCCGATGAAATGATTTTGCAATGGTTGCATCGGTTTGATCCGCAAGT
GCCGATTTGGGCCATGTTTGTGTGCCCTGCAATGCTTTCCGGATTAATGG
TGGGAAAGCAGGCGTTGAATCTTAAGAAAATCGAGGAGATTTCGATGGCC
AGGGTATGGGCGGCACCGAGGGATGTGGAAGCACAGTACGTGAGCTTTTT
CATTTGTAGTAATAATTATGAGGCGACCCGTGAGGCCTATGCAATGTTAG
AGAGCCGTGCGCACAACCAGATGGAGATGGCCATGGCTACGAATATGCAT
CAGCAGCAGCACATGCCGGCCACGAAGGCCACAGCGGGTCCCGTGCGCAT
TCAGAAGCCCTCTTCCGCTACCTCTTCCTCCTCTGTCGCAGCGACGTCTG
GAGACATAGCAAAGAAAAACGTCATGACGCCAGTCTCGTCCCCTTCTTCC
ATTTCCTCCTGCTCCGATGACGATTCCTCGTCGACTGACACCGAAGCCTC
TACGCAGCAGCCCTCAAGGGATAGTACTCCACCTGCCACGCATGCCACCA
AGAAGCCGACCCACTCGTCCTCTGCGTCCTCCTCCTCATCCCTGGCCTCT
ACGACTACGACAAAGGGTAGCGACAGCCGCAGCACCAGCAGCACCAGCAC
CAGCAGTGATGAGAATATTAAGTCGGATGAAGTTACAAGCGGCGTGAAGG
CTAACCATCAGAGCGCAACTCCTACAAAGAAAGAGTTGGATAAGAAGTAG

Synonyms

Publications