jgi.p|Nanoce1779_2|600086, mRNA_7802 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600086
Unique NamemRNA_7802
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length433
Alignment locationscaffold_21:369174..369606 -

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Properties
Property NameValue
TranscriptId600172
TrackFilteredModels2
ProteinId600086
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:369174..369606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600086gene_7802Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600086mRNA_7802-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7802CDS_7802Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Nanoce1779_2|600086|organism=Nannochloropsis oceanica|type=mRNA|length=433bp
GGACGGTGGCGACTAAGGTTATTTCTTTGTTGAATTTCGTTGATCTTTGT
GTGTGCCAAATTTATCTCATTGGTCATGGCGTGTGCTACATTAAATTGAG
GTGCAGCTGGCCCCCTCGCAAGCCCTACCATTGGCCTCTCAAAATATGTG
CATGCACCAGGTATTTACATGGGCGACTGTATTCGTCTTCACTGTGCGCT
TTCATTTTTACGTAACTTATCTCCTCTCCCTCCTCCCTGTTCCCCTATCC
TCCTCGCCCCTCACACCTCACACCCACTGCAGCTGCTCAAACATCCGTGC
GACTTCCAATCGGCCGAGCTCGCTCGCCCCCGGGTTCACCACCGAGTTCA
AATGTTGATGGTCACAAAGCCAGGCACTCTTCACCCGGCATCGTACCATC
CCTTCCTCTTCTTCTCCCCCCCCCTCCCCAGCC
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protein sequence of jgi.p|Nanoce1779_2|600086

>mRNA_7802-protein ID=mRNA_7802-protein|Name=jgi.p|Nanoce1779_2|600086|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MCMHQVFTWATVFVFTVRFHFYVTYLLSLLPVPLSSSPLTPHTHCSCSNI
RATSNRPSSLAPGFTTEFKC*
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mRNA from alignment at scaffold_21:369174..369606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Nanoce1779_2|600086|organism=Nannochloropsis oceanica|type=mRNA|length=433bp|location=Sequence derived from alignment at scaffold_21:369174..369606- (Nannochloropsis oceanica)
GGACGGTGGCGACTAAGGTTATTTCTTTGTTGAATTTCGTTGATCTTTGT
GTGTGCCAAATTTATCTCATTGGTCATGGCGTGTGCTACATTAAATTGAG
GTGCAGCTGGCCCCCTCGCAAGCCCTACCATTGGCCTCTCAAAATATGTG
CATGCACCAGGTATTTACATGGGCGACTGTATTCGTCTTCACTGTGCGCT
TTCATTTTTACGTAACTTATCTCCTCTCCCTCCTCCCTGTTCCCCTATCC
TCCTCGCCCCTCACACCTCACACCCACTGCAGCTGCTCAAACATCCGTGC
GACTTCCAATCGGCCGAGCTCGCTCGCCCCCGGGTTCACCACCGAGTTCA
AATGTTGATGGTCACAAAGCCAGGCACTCTTCACCCGGCATCGTACCATC
CCTTCCTCTTCTTCTCCCCCCCCCTCCCCAGCC
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Coding sequence (CDS) from alignment at scaffold_21:369174..369606-

>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Nanoce1779_2|600086|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_21:369174..369606- (Nannochloropsis oceanica)
ATGTGCATGCACCAGGTATTTACATGGGCGACTGTATTCGTCTTCACTGT
GCGCTTTCATTTTTACGTAACTTATCTCCTCTCCCTCCTCCCTGTTCCCC
TATCCTCCTCGCCCCTCACACCTCACACCCACTGCAGCTGCTCAAACATC
CGTGCGACTTCCAATCGGCCGAGCTCGCTCGCCCCCGGGTTCACCACCGA
GTTCAAATGTTGA
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Synonyms
Publications