jgi.p|Nanoce1779_2|531989, mRNA_7801 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531989
Unique NamemRNA_7801
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length663
Alignment locationscaffold_21:366797..367459 -

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Properties
Property NameValue
TranscriptId532075
TrackFilteredModels2
ProteinId531989
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:366797..367459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531989gene_7801Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7801CDS_7801Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531989mRNA_7801-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7801 ID=mRNA_7801|Name=jgi.p|Nanoce1779_2|531989|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
ATGGCTGTGTCAGCTCTGCCCTCGACGAGGGAGGGCCTGGACAAGCTCCT
TTTTCGCCTCGTCATGGCCGAAGAAAGCCGTATTGAGTCCCTCATCTATT
TTCATTTACCCCATCTCCTTGATATGCTAAGCACCACGACCGATGACACG
GTCCGGAACAAGGTAGTGGAATGCTGCTCTCACCTCATCAAACGCTTGCG
TGCCGACAGCAAATTGCAAGTACCCTGTGATATTCTCCTCATAAAAGCAA
GGGCACCGACTGCGGGAGCTTTCACCAGGAATTTTGCGTTGGTTTTCCTG
GAGATAGGCTGCCCTCGGTTGCCCCCGCAGGGAAAAAGTGAGTTGGGCCA
GGCATTGTTATTGGGCTTGGCAGCAGAGGGCACGTCGGAGAAAGACCGGC
ATTACGGACGGCAGCAGGTAGCATTGGTGCATAGATTGTTGGAGGTGCTT
GAGTTTATTCAGCCTCCTCCAACCACGCTGGTCGCGCATCAAGTCATTAC
TGCTGCCACAGCTACTACTACTGCTGCCACTGCTACCGCTGCTGGAAGCG
GTAACAGCATGGACGTTGAAAACCTTCCTCCTTCTCCTCCCTCACCTTCC
CCCAAAGACCTAGCCTTCCTCCTGGAGCTCTTCCTCGACATCCTCCTCAT
CCCCAACGCCTCC
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protein sequence of jgi.p|Nanoce1779_2|531989

>mRNA_7801-protein ID=mRNA_7801-protein|Name=jgi.p|Nanoce1779_2|531989|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAVSALPSTREGLDKLLFRLVMAEESRIESLIYFHLPHLLDMLSTTTDDT
VRNKVVECCSHLIKRLRADSKLQVPCDILLIKARAPTAGAFTRNFALVFL
EIGCPRLPPQGKSELGQALLLGLAAEGTSEKDRHYGRQQVALVHRLLEVL
EFIQPPPTTLVAHQVITAATATTTAATATAAGSGNSMDVENLPPSPPSPS
PKDLAFLLELFLDILLIPNAS
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mRNA from alignment at scaffold_21:366797..367459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7801 ID=mRNA_7801|Name=jgi.p|Nanoce1779_2|531989|organism=Nannochloropsis oceanica|type=mRNA|length=663bp|location=Sequence derived from alignment at scaffold_21:366797..367459- (Nannochloropsis oceanica)
ATGGCTGTGTCAGCTCTGCCCTCGACGAGGGAGGGCCTGGACAAGCTCCT TTTTCGCCTCGTCATGGCCGAAGAAAGCCGTATTGAGTCCCTCATCTATT TTCATTTACCCCATCTCCTTGATATGCTAAGCACCACGACCGATGACACG GTCCGGAACAAGGTAGTGGAATGCTGCTCTCACCTCATCAAACGCTTGCG TGCCGACAGCAAATTGCAAGTACCCTGTGATATTCTCCTCATAAAAGCAA GGGCACCGACTGCGGGAGCTTTCACCAGGAATTTTGCGTTGGTTTTCCTG GAGATAGGCTGCCCTCGGTTGCCCCCGCAGGGAAAAAGTGAGTTGGGCCA GGCATTGTTATTGGGCTTGGCAGCAGAGGGCACGTCGGAGAAAGACCGGC ATTACGGACGGCAGCAGGTAGCATTGGTGCATAGATTGTTGGAGGTGCTT GAGTTTATTCAGCCTCCTCCAACCACGCTGGTCGCGCATCAAGTCATTAC TGCTGCCACAGCTACTACTACTGCTGCCACTGCTACCGCTGCTGGAAGCG GTAACAGCATGGACGTTGAAAACCTTCCTCCTTCTCCTCCCTCACCTTCC CCCAAAGACCTAGCCTTCCTCCTGGAGCTCTTCCTCGACATCCTCCTCAT CCCCAACGCCTCC
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Coding sequence (CDS) from alignment at scaffold_21:366797..367459-

>mRNA_7801 ID=mRNA_7801|Name=jgi.p|Nanoce1779_2|531989|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_21:366797..367459- (Nannochloropsis oceanica)
ATGGCTGTGTCAGCTCTGCCCTCGACGAGGGAGGGCCTGGACAAGCTCCT
TTTTCGCCTCGTCATGGCCGAAGAAAGCCGTATTGAGTCCCTCATCTATT
TTCATTTACCCCATCTCCTTGATATGCTAAGCACCACGACCGATGACACG
GTCCGGAACAAGGTAGTGGAATGCTGCTCTCACCTCATCAAACGCTTGCG
TGCCGACAGCAAATTGCAAGTACCCTGTGATATTCTCCTCATAAAAGCAA
GGGCACCGACTGCGGGAGCTTTCACCAGGAATTTTGCGTTGGTTTTCCTG
GAGATAGGCTGCCCTCGGTTGCCCCCGCAGGGAAAAAGTGAGTTGGGCCA
GGCATTGTTATTGGGCTTGGCAGCAGAGGGCACGTCGGAGAAAGACCGGC
ATTACGGACGGCAGCAGGTAGCATTGGTGCATAGATTGTTGGAGGTGCTT
GAGTTTATTCAGCCTCCTCCAACCACGCTGGTCGCGCATCAAGTCATTAC
TGCTGCCACAGCTACTACTACTGCTGCCACTGCTACCGCTGCTGGAAGCG
GTAACAGCATGGACGTTGAAAACCTTCCTCCTTCTCCTCCCTCACCTTCC
CCCAAAGACCTAGCCTTCCTCCTGGAGCTCTTCCTCGACATCCTCCTCAT
CCCCAACGCCTCC
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Synonyms
Publications