jgi.p|Nanoce1779_2|600066, mRNA_7797 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600066
Unique Name	mRNA_7797
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2714
Alignment location	scaffold_21:354581..357294 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600152
Track	FilteredModels2
ProteinId	600066

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:354581..357294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600066	gene_7797	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600066	mRNA_7797-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7797	CDS_7797	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:354581..357294+
coding sequence from alignment at scaffold_21:354581..357294+

mRNA sequence

>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Nanoce1779_2|600066|organism=Nannochloropsis oceanica|type=mRNA|length=2714bp
GGGGGGGAGAAGACTGGAAAGAGGGCGGGCATTGGATACCGGTAGCGACG
ACAAGCGCCGAAACGGCCGACCCGGCCTTTTCTGCAGGGCCTGTAGGAAG
GAGTGATCACACGGGGATACTGTTCAAAAACCCAGCAACGGGCAAAGAAC
ACTTCCTGGTCTATGGTGGTAGGTTGGTAGAGCCATCAGGCGTGGCAGTC
GCTGCTGGCAGTAATAGTACAAGCAGCCGCAGCAGCCGCAGCAAAGGGAG
TGGGGGTCAGATGGCCAGGGAGGTTTATGGTGATATGTGGAGCTTAGATT
TGGAGACGATGGTGTGGACATTATTATATGCTGGAGGGGAGAAAGATGGA
GGGCCACCGGCGAGGTTTCTGCACGCATCGTCGGTATTGATTGAGGAGGA
AGGGGGGGAGGAAGTGGCGAAGATTGTGGTGTTTGGGGGATTGACGTTTT
TCGGGAACTCGCTATTTGCGCTCGATGATGTGTGGGAGTTTTCAATCAAA
GACCGGACGTGGAGGCAGCAGAAGATGGAGGTGGCCCTGCTAAGGAGCGC
CCTACCCATGCTCAAAGCTCCTCTAGCTGTTCCTGCCGCCGCTGCTGCTG
ACGGTGCGGCGGCCGGCCCTGCTGCTCCTCCAACTAGTGTTCAGGTTTTG
TATGCATTTGCGGGATATGTAATTTACACCTCGGCAGGTCTGGCTGTTGT
CTACAACGATTTGTTAGTCTGGGATCCCAGGAAACCGTTCTGGCAGAAAT
TCGTGAATCCAAACGGCAAGCCTGCGCCTGCCCCGAGATTCGACCATCGT
GGAGTTGTCTGGAGAAAGGAGGGGAGTAATGAGGGGGGTGTGCTAGTGTT
CTACGGGGGCAGTTATCAGGATGTGAATGATGTGGCCGACGTCTGGATGA
TCGATGCCGGAGGGATGGAGGAAGGGCAGTTGACCAAGGCGCCGGCGGAG
GGGCTGAACGCCCTTTTTGCAGGACGGATGATGTTCATTTTGTCGAGCTT
GGTACTTATGTGTATGTGCTCAGCATTCTTGTCGTTGAGAATGAGAAGAC
AGATGTTGCTGAGGGCACGAGGGGCGGCGGGGGAGGCAGTGGGCGAGGGA
GGGATGGGGCAGGCGGAGGCGAGGGGGAGGGAGGAGAGGGCAAGAGTGAC
GGAAGAGGCCCTGAGGTCGTTGCCGGTTGTGCAGTATGGAAGGAGTGATG
GTAGCGCCGGTGGAGAGTATGGAGGAGCAGGAGCAGGAGCAGTGGCAGGG
GCTGGAGGAGAAAGAGGAGGAGGGGTGGATAGTGGACCGGCATCAATGGA
GGGAGGAAGGGCGGAAAGGGGCAGAGAGTCAACACCAGCGGACGACAACA
GAGACATGTGCGCCATCTGTTTGATGGACTATGTGGAGGAGGAGATGTTG
AGGGAGCTGCCGTGCGGGCATCGTTTCCACGTGCAATGCGTCGATCAATG
GTTCCGGTCTGCCAGCAGCCTCTCGTGCCCCATGTGCAAGGCCCGGGTCA
CCGCTCCTCCCTCTCCCTCGCTCATCACTTCCCCCTCCTCCTCCACCTCG
TCAATCACGGGCTTATACCCCTCTTCTACCGCCACTACGGGTGCTACCAC
TACTAGTACCACCGCTCACGCGTTCTCTTCTCTCCTGTCAAGCCTTAATC
CGTTCCGAGAATCAAGGATACAACACCGTGTTTCCTCTTCGACCACTACG
AGTACTCCTGGTGCTGACCACCGCAACAGCAGCACGGCCAGCATGACAGA
CAGCTCCACCGCGCCCGTCCTCCCCACCTCGTCCTTCCCCTCCTCGTCCT
CCGCGCCTATTTCTATTGCTGCTGTCGGCGCGATCCCTGGTGCTGCCGCT
GCTGCCGCTGAAGGAGAGAGTGGTCATGCGACGGGTTCGTACCAGCCACC
TGACAGCTTGATTCCGTACCACGACATGTCCCTTGTCGAGATGCAGCAAC
CTGTTGCCTCCTCCCTCCCGTCCTCGTCCTCGCCCTCGTTCTCATCCTCC
CTGCCTTCGTCGGCCTCGCCAAGGCGAAGGCAAGAGCAATCACCACATCC
TTCTTCCTCCCCGTCAGCAGCAGCTGCAGCAGCGGCAGCAAGAAGAAATC
TAGGAGAGGAAGGATCTGGTGGAGGAGGAGGAGGAGGAGGGAGAGGCGGT
CCACTAGGAGGAGCCGATCTTGTGTAAAAAACGTCCCATAGGAATGGAAA
AGAGAAAACACAATTTAACGATGAAGTTAATACATAGTCAGCCACGTGGA
TCTGAAACAGAGAGAAGGTGTGTGTACCTGTGTATGTGTGGGAGACCTAT
GACGGTCTGCACGCACAGGAAACTTTGGGTAAATGGCGGGAAAGTGAAAG
AAATAGAGAGGCAATGAGAAAGCGAATAAGAAATAAGATATGTTCTGCCG
AACAAATAAGGATACGAAGGGAAGAGTAGTGGAACGCTTTCATGCGCTGA
TGATATGCCGCAGTCAAAGCACTCGACCTCTCACACAACTCCATTGCTGT
CTTTGCCCCCCCCCCCCCCCTGTATTTGCACGCCAGCCCCAAGCAAGAAG
GCAAGGAAAAGCCATGACACATGTAGAGGGAGCAAGGAAGGAAACAGGGA
AATGCGAAAGAGGGAGGGGAGAGGGAAAACTAGAGCCCACGTGCACCGAG
ACCTTGAGCAGATCGATGACTATGCTCATCAACCAAGAAGAAAAACTAAA
AGCCTTCGTCTATG

protein sequence of jgi.p|Nanoce1779_2|600066

>mRNA_7797-protein ID=mRNA_7797-protein|Name=jgi.p|Nanoce1779_2|600066|organism=Nannochloropsis oceanica|type=polypeptide|length=639bp
MAREVYGDMWSLDLETMVWTLLYAGGEKDGGPPARFLHASSVLIEEEGGE
EVAKIVVFGGLTFFGNSLFALDDVWEFSIKDRTWRQQKMEVALLRSALPM
LKAPLAVPAAAAADGAAAGPAAPPTSVQVLYAFAGYVIYTSAGLAVVYND
LLVWDPRKPFWQKFVNPNGKPAPAPRFDHRGVVWRKEGSNEGGVLVFYGG
SYQDVNDVADVWMIDAGGMEEGQLTKAPAEGLNALFAGRMMFILSSLVLM
CMCSAFLSLRMRRQMLLRARGAAGEAVGEGGMGQAEARGREERARVTEEA
LRSLPVVQYGRSDGSAGGEYGGAGAGAVAGAGGERGGGVDSGPASMEGGR
AERGRESTPADDNRDMCAICLMDYVEEEMLRELPCGHRFHVQCVDQWFRS
ASSLSCPMCKARVTAPPSPSLITSPSSSTSSITGLYPSSTATTGATTTST
TAHAFSSLLSSLNPFRESRIQHRVSSSTTTSTPGADHRNSSTASMTDSST
APVLPTSSFPSSSSAPISIAAVGAIPGAAAAAAEGESGHATGSYQPPDSL
IPYHDMSLVEMQQPVASSLPSSSSPSFSSSLPSSASPRRRQEQSPHPSSS
PSAAAAAAAARRNLGEEGSGGGGGGGGRGGPLGGADLV*

mRNA from alignment at scaffold_21:354581..357294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Nanoce1779_2|600066|organism=Nannochloropsis oceanica|type=mRNA|length=2714bp|location=Sequence derived from alignment at scaffold_21:354581..357294+ (Nannochloropsis oceanica)
GGGGGGGAGAAGACTGGAAAGAGGGCGGGCATTGGATACCGGTAGCGACG
ACAAGCGCCGAAACGGCCGACCCGGCCTTTTCTGCAGGGCCTGTAGGAAG
GAGTGATCACACGGGGATACTGTTCAAAAACCCAGCAACGGGCAAAGAAC
ACTTCCTGGTCTATGGTGGTAGGTTGGTAGAGCCATCAGGCGTGGCAGTC
GCTGCTGGCAGTAATAGTACAAGCAGCCGCAGCAGCCGCAGCAAAGGGAG
TGGGGGTCAGATGGCCAGGGAGGTTTATGGTGATATGTGGAGCTTAGATT
TGGAGACGATGGTGTGGACATTATTATATGCTGGAGGGGAGAAAGATGGA
GGGCCACCGGCGAGGTTTCTGCACGCATCGTCGGTATTGATTGAGGAGGA
AGGGGGGGAGGAAGTGGCGAAGATTGTGGTGTTTGGGGGATTGACGTTTT
TCGGGAACTCGCTATTTGCGCTCGATGATGTGTGGGAGTTTTCAATCAAA
GACCGGACGTGGAGGCAGCAGAAGATGGAGGTGGCCCTGCTAAGGAGCGC
CCTACCCATGCTCAAAGCTCCTCTAGCTGTTCCTGCCGCCGCTGCTGCTG
ACGGTGCGGCGGCCGGCCCTGCTGCTCCTCCAACTAGTGTTCAGGTTTTG
TATGCATTTGCGGGATATGTAATTTACACCTCGGCAGGTCTGGCTGTTGT
CTACAACGATTTGTTAGTCTGGGATCCCAGGAAACCGTTCTGGCAGAAAT
TCGTGAATCCAAACGGCAAGCCTGCGCCTGCCCCGAGATTCGACCATCGT
GGAGTTGTCTGGAGAAAGGAGGGGAGTAATGAGGGGGGTGTGCTAGTGTT
CTACGGGGGCAGTTATCAGGATGTGAATGATGTGGCCGACGTCTGGATGA
TCGATGCCGGAGGGATGGAGGAAGGGCAGTTGACCAAGGCGCCGGCGGAG
GGGCTGAACGCCCTTTTTGCAGGACGGATGATGTTCATTTTGTCGAGCTT
GGTACTTATGTGTATGTGCTCAGCATTCTTGTCGTTGAGAATGAGAAGAC
AGATGTTGCTGAGGGCACGAGGGGCGGCGGGGGAGGCAGTGGGCGAGGGA
GGGATGGGGCAGGCGGAGGCGAGGGGGAGGGAGGAGAGGGCAAGAGTGAC
GGAAGAGGCCCTGAGGTCGTTGCCGGTTGTGCAGTATGGAAGGAGTGATG
GTAGCGCCGGTGGAGAGTATGGAGGAGCAGGAGCAGGAGCAGTGGCAGGG
GCTGGAGGAGAAAGAGGAGGAGGGGTGGATAGTGGACCGGCATCAATGGA
GGGAGGAAGGGCGGAAAGGGGCAGAGAGTCAACACCAGCGGACGACAACA
GAGACATGTGCGCCATCTGTTTGATGGACTATGTGGAGGAGGAGATGTTG
AGGGAGCTGCCGTGCGGGCATCGTTTCCACGTGCAATGCGTCGATCAATG
GTTCCGGTCTGCCAGCAGCCTCTCGTGCCCCATGTGCAAGGCCCGGGTCA
CCGCTCCTCCCTCTCCCTCGCTCATCACTTCCCCCTCCTCCTCCACCTCG
TCAATCACGGGCTTATACCCCTCTTCTACCGCCACTACGGGTGCTACCAC
TACTAGTACCACCGCTCACGCGTTCTCTTCTCTCCTGTCAAGCCTTAATC
CGTTCCGAGAATCAAGGATACAACACCGTGTTTCCTCTTCGACCACTACG
AGTACTCCTGGTGCTGACCACCGCAACAGCAGCACGGCCAGCATGACAGA
CAGCTCCACCGCGCCCGTCCTCCCCACCTCGTCCTTCCCCTCCTCGTCCT
CCGCGCCTATTTCTATTGCTGCTGTCGGCGCGATCCCTGGTGCTGCCGCT
GCTGCCGCTGAAGGAGAGAGTGGTCATGCGACGGGTTCGTACCAGCCACC
TGACAGCTTGATTCCGTACCACGACATGTCCCTTGTCGAGATGCAGCAAC
CTGTTGCCTCCTCCCTCCCGTCCTCGTCCTCGCCCTCGTTCTCATCCTCC
CTGCCTTCGTCGGCCTCGCCAAGGCGAAGGCAAGAGCAATCACCACATCC
TTCTTCCTCCCCGTCAGCAGCAGCTGCAGCAGCGGCAGCAAGAAGAAATC
TAGGAGAGGAAGGATCTGGTGGAGGAGGAGGAGGAGGAGGGAGAGGCGGT
CCACTAGGAGGAGCCGATCTTGTGTAAAAAACGTCCCATAGGAATGGAAA
AGAGAAAACACAATTTAACGATGAAGTTAATACATAGTCAGCCACGTGGA
TCTGAAACAGAGAGAAGGTGTGTGTACCTGTGTATGTGTGGGAGACCTAT
GACGGTCTGCACGCACAGGAAACTTTGGGTAAATGGCGGGAAAGTGAAAG
AAATAGAGAGGCAATGAGAAAGCGAATAAGAAATAAGATATGTTCTGCCG
AACAAATAAGGATACGAAGGGAAGAGTAGTGGAACGCTTTCATGCGCTGA
TGATATGCCGCAGTCAAAGCACTCGACCTCTCACACAACTCCATTGCTGT
CTTTGCCCCCCCCCCCCCCCTGTATTTGCACGCCAGCCCCAAGCAAGAAG
GCAAGGAAAAGCCATGACACATGTAGAGGGAGCAAGGAAGGAAACAGGGA
AATGCGAAAGAGGGAGGGGAGAGGGAAAACTAGAGCCCACGTGCACCGAG
ACCTTGAGCAGATCGATGACTATGCTCATCAACCAAGAAGAAAAACTAAA
AGCCTTCGTCTATG

Coding sequence (CDS) from alignment at scaffold_21:354581..357294+

>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Nanoce1779_2|600066|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_21:354581..357294+ (Nannochloropsis oceanica)
ATGGCCAGGGAGGTTTATGGTGATATGTGGAGCTTAGATTTGGAGACGAT
GGTGTGGACATTATTATATGCTGGAGGGGAGAAAGATGGAGGGCCACCGG
CGAGGTTTCTGCACGCATCGTCGGTATTGATTGAGGAGGAAGGGGGGGAG
GAAGTGGCGAAGATTGTGGTGTTTGGGGGATTGACGTTTTTCGGGAACTC
GCTATTTGCGCTCGATGATGTGTGGGAGTTTTCAATCAAAGACCGGACGT
GGAGGCAGCAGAAGATGGAGGTGGCCCTGCTAAGGAGCGCCCTACCCATG
CTCAAAGCTCCTCTAGCTGTTCCTGCCGCCGCTGCTGCTGACGGTGCGGC
GGCCGGCCCTGCTGCTCCTCCAACTAGTGTTCAGGTTTTGTATGCATTTG
CGGGATATGTAATTTACACCTCGGCAGGTCTGGCTGTTGTCTACAACGAT
TTGTTAGTCTGGGATCCCAGGAAACCGTTCTGGCAGAAATTCGTGAATCC
AAACGGCAAGCCTGCGCCTGCCCCGAGATTCGACCATCGTGGAGTTGTCT
GGAGAAAGGAGGGGAGTAATGAGGGGGGTGTGCTAGTGTTCTACGGGGGC
AGTTATCAGGATGTGAATGATGTGGCCGACGTCTGGATGATCGATGCCGG
AGGGATGGAGGAAGGGCAGTTGACCAAGGCGCCGGCGGAGGGGCTGAACG
CCCTTTTTGCAGGACGGATGATGTTCATTTTGTCGAGCTTGGTACTTATG
TGTATGTGCTCAGCATTCTTGTCGTTGAGAATGAGAAGACAGATGTTGCT
GAGGGCACGAGGGGCGGCGGGGGAGGCAGTGGGCGAGGGAGGGATGGGGC
AGGCGGAGGCGAGGGGGAGGGAGGAGAGGGCAAGAGTGACGGAAGAGGCC
CTGAGGTCGTTGCCGGTTGTGCAGTATGGAAGGAGTGATGGTAGCGCCGG
TGGAGAGTATGGAGGAGCAGGAGCAGGAGCAGTGGCAGGGGCTGGAGGAG
AAAGAGGAGGAGGGGTGGATAGTGGACCGGCATCAATGGAGGGAGGAAGG
GCGGAAAGGGGCAGAGAGTCAACACCAGCGGACGACAACAGAGACATGTG
CGCCATCTGTTTGATGGACTATGTGGAGGAGGAGATGTTGAGGGAGCTGC
CGTGCGGGCATCGTTTCCACGTGCAATGCGTCGATCAATGGTTCCGGTCT
GCCAGCAGCCTCTCGTGCCCCATGTGCAAGGCCCGGGTCACCGCTCCTCC
CTCTCCCTCGCTCATCACTTCCCCCTCCTCCTCCACCTCGTCAATCACGG
GCTTATACCCCTCTTCTACCGCCACTACGGGTGCTACCACTACTAGTACC
ACCGCTCACGCGTTCTCTTCTCTCCTGTCAAGCCTTAATCCGTTCCGAGA
ATCAAGGATACAACACCGTGTTTCCTCTTCGACCACTACGAGTACTCCTG
GTGCTGACCACCGCAACAGCAGCACGGCCAGCATGACAGACAGCTCCACC
GCGCCCGTCCTCCCCACCTCGTCCTTCCCCTCCTCGTCCTCCGCGCCTAT
TTCTATTGCTGCTGTCGGCGCGATCCCTGGTGCTGCCGCTGCTGCCGCTG
AAGGAGAGAGTGGTCATGCGACGGGTTCGTACCAGCCACCTGACAGCTTG
ATTCCGTACCACGACATGTCCCTTGTCGAGATGCAGCAACCTGTTGCCTC
CTCCCTCCCGTCCTCGTCCTCGCCCTCGTTCTCATCCTCCCTGCCTTCGT
CGGCCTCGCCAAGGCGAAGGCAAGAGCAATCACCACATCCTTCTTCCTCC
CCGTCAGCAGCAGCTGCAGCAGCGGCAGCAAGAAGAAATCTAGGAGAGGA
AGGATCTGGTGGAGGAGGAGGAGGAGGAGGGAGAGGCGGTCCACTAGGAG
GAGCCGATCTTGTGTAA

Synonyms

Publications