jgi.p|Nanoce1779_2|600060, mRNA_7796 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600060
Unique NamemRNA_7796
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length665
Alignment locationscaffold_21:351189..352112 -

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Properties
Property NameValue
TranscriptId600146
TrackFilteredModels2
ProteinId600060
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:351189..352112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600060gene_7796Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600060mRNA_7796-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7796CDS_7796Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Nanoce1779_2|600060|organism=Nannochloropsis oceanica|type=mRNA|length=665bp
TGACGCCGAGGATACGTACCTTATGTCGGAGAGTGATGAGGAAGGTCGCA
GTGGAGGAGGAGGGGGGGGAGGAAAGGGATTCAGTGACAGCGAGGAGGAG
GAGGAGCTTAATCGGAAGCGGCGGGCGACCAAAAAGATTCCCGAATGGGC
CCGTGGCGCCGCCTTGGCCGCTGCTTTGGAAAAGCAGTTCACCACTGATC
CTGAGCTGTGGGTAGATCCAGACACGATTTTCCCGGAAGTGACGTCCACC
TGCAATTTGGAGGAGATCTTCAAGGTCCGCAAGAAACGGTACTACAAGCG
GACGAGCAGTGGAATGTGGGAGAATGATGGGTTGACCCTTGGGGAGAAGA
TGACATACAGAAGAGCGATGAAGGAGGAGAGTGATGCGGGGAGCAGCTCA
AGGGGAAAGTATTACCTTGGTTGTGGTGGTGGGAAAATGGGGATTAATTA
GTTTGAGGGTGAGAAGGAAGACGATGCTGGTTGAAGTAGGAGATGGAGAG
CAGGCGGATGAGAGTGGGGGCTTCTGGAAGAAAAAGAAAGCAGTTAAATG
TGCTCGCGCGTCACAGGTACGAAGAGGTAAAAATATATGGCGTTAAAGTG
CGATCGATATTGGTATCATACAGCCCTGCCGATTTTCAAAGTCTTAAAAG
TATTTTGTATTGATG
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protein sequence of jgi.p|Nanoce1779_2|600060

>mRNA_7796-protein ID=mRNA_7796-protein|Name=jgi.p|Nanoce1779_2|600060|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MSESDEEGRSGGGGGGGKGFSDSEEEEELNRKRRATKKIPEWARGAALAA
ALEKQFTTDPELWVDPDTIFPEVTSTCNLEEIFKVRKKRYYKRTSSGMWE
NDGLTLGEKMTYRRAMKEESDAGSSSRGKYYLGCGGGKMGI
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mRNA from alignment at scaffold_21:351189..352112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Nanoce1779_2|600060|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_21:351189..352112- (Nannochloropsis oceanica)
TGACGCCGAGGATACGTACCTTATGTCGGAGAGTGATGAGGAAGGTCGCA
GTGGAGGAGGAGGGGGGGGAGGAAAGGGATTCAGTGACAGCGAGGAGGAG
GAGGAGCTTAATCGGAAGCGGCGGGCGACCAAAAAGGTGCGTATGAGTCG
TGGGGGGGGGCAGGGGGCCATAACTGGAGGAGAAGTCGGTACGGACTCAT
TTCCCCTTGGTTTTTGCATGGAATGGTGGAGATTGTGGAGTGGAGGCGCT
GTTACGGAATGCAGGGGGAAAGCAATTTGGCTATCTTTTATCCACCGACA
CCCTGCTCCTCGTGCTACCAGTGCCGGTTCCGCTTCAGTGTACGAGTAAA
TGATTTGATTCTTACGTGTTCGTTTTCTCATCATCTTCAATCTAGATTCC
CGAATGGGCCCGTGGCGCCGCCTTGGCCGCTGCTTTGGAAAAGCAGTTCA
CCACTGATCCTGAGCTGTGGGTAGATCCAGACACGATTTTCCCGGAAGTG
ACGTCCACCTGCAATTTGGAGGAGATCTTCAAGGTCCGCAAGAAACGGTA
CTACAAGCGGACGAGCAGTGGAATGTGGGAGAATGATGGGTTGACCCTTG
GGGAGAAGATGACATACAGAAGAGCGATGAAGGAGGAGAGTGATGCGGGG
AGCAGCTCAAGGGGAAAGTATTACCTTGGTTGTGGTGGTGGGAAAATGGG
GATTAATTAGTTTGAGGGTGAGAAGGAAGACGATGCTGGTTGAAGTAGGA
GATGGAGAGCAGGCGGATGAGAGTGGGGGCTTCTGGAAGAAAAAGAAAGC
AGTTAAATGTGCTCGCGCGTCACAGGTACGAAGAGGTAAAAATATATGGC
GTTAAAGTGCGATCGATATTGGTATCATACAGCCCTGCCGATTTTCAAAG
TCTTAAAAGTATTTTGTATTGATG
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Coding sequence (CDS) from alignment at scaffold_21:351189..352112-

>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Nanoce1779_2|600060|organism=Nannochloropsis oceanica|type=CDS|length=850bp|location=Sequence derived from alignment at scaffold_21:351189..352112- (Nannochloropsis oceanica)
ATTCCCGAATGGGCCCGTGGCGCCGCCTTGGCCGCTGCTTTGGAAAAGCA
GTTCACCACTGATCCTGAGCTGTGGGTAGATCCAGACACGATTTTCCCGG
AAGTGACGTCCACCTGCAATTTGGAGGAGATCTTCAAGGTCCGCAAGAAA
CGGTACTACAAGCGGACGAGCAGTGGAATGTGGGAGAATGATGGGTTGAC
CCTTGGGGAGAAGATGACATACAGAAGAGCGATGAAGGAGGAGAGTGATG
CGGGGAGCAGCTCAAGGGGAAAGTATTACCTTGGTTGTGGTGGTGGGAAA
ATGGGGATTAAATGTCGGAGAGTGATGAGGAAGGTCGCAGTGGAGGAGGA
GGGGGGGGAGGAAAGGGATTCAGTGACAGCGAGGAGGAGGAGGAGCTTAA
TCGGAAGCGGCGGGCGACCAAAAAGATTCCCGAATGGGCCCGTGGCGCCG
CCTTGGCCGCTGCTTTGGAAAAGCAGTTCACCACTGATCCTGAGCTGTGG
GTAGATCCAGACACGATTTTCCCGGAAGTGACGTCCACCTGCAATTTGGA
GGAGATCTTCAAGGTCCGCAAGAAACGGTACTACAAGCGGACGAGCAGTG
GAATGTGGGAGAATGATGGGTTGACCCTTGGGGAGAAGATGACATACAGA
AGAGCGATGAAGGAGGAGAGTGATGCGGGGAGCAGCTCAAGGGGAAAGTA
TTACCTTGGTTGTGGTGGTGGGAAAATGGGGATTAAATGTCGGAGAGTGA
TGAGGAAGGTCGCAGTGGAGGAGGAGGGGGGGGAGGAAAGGGATTCAGTG
ACAGCGAGGAGGAGGAGGAGCTTAATCGGAAGCGGCGGGCGACCAAAAAG
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Synonyms
Publications