jgi.p|Nanoce1779_2|600051, mRNA_7793 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600051
Unique Name	mRNA_7793
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1720
Alignment location	scaffold_21:346573..348292 +

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Properties


Property Name	Value
TranscriptId	600137
Track	FilteredModels2
ProteinId	600051

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:346573..348292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600051	gene_7793	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600051	mRNA_7793-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7793	CDS_7793	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:346573..348292+
coding sequence from alignment at scaffold_21:346573..348292+

mRNA sequence

>mRNA_7793 ID=mRNA_7793|Name=jgi.p|Nanoce1779_2|600051|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp
ACAGGGGTTTGGAGTTTGATCTAGTCTTGACGGCTTTGCAATCCTTCAGG
CGGAAGGTAGTATCTCCTTACCATCGGTTATCGCAACACTACACAACCTG
TCTGTCCTGCATAACCTAGTTCATGAAGTTCTGCCCCATCTGCTCCAATC
TATTGCTTGTGGAGCTCGGGGAGATCAGCTTTCGATTTTGCTGCCAGACC
TGCCCCTACATTTCGTCTATCACCAAGAAAATCAGTAAGACCATGAAGCT
GAAGCGGAAAGAGGTGGATGATGTCCTCGGTGGGGAAGATGCTTGGGCAG
CCGCGAATCGTACCACCGCAGCTTGCCCGTATTGTGACAACATGGAGGCA
TTCTTCGTCCAGATGCAAATTCGGTCGGCGGATGAGCCCATGACGACATT
TTATAGATGCACGCTCTGTGCCAACAGGTGGTCGGGCGACTAATCAGAGA
GGGAAAGGTGGGTAGGTGTGCATACACGAGTGGAGGCCTTAACAACAATA
GCAAACGAAGGAATAAAGTACAACGACATTCAGGTTTTTGTTTTGTTTGA
TGCATCTTGCAAATCATTTTATCGATGGGCTTCGAGACAGCGCAACAGGG
GCGGGGGAGAGTTTTACGGGATGACCGGAAAGAGGAACACTTTCCGAAGG
CTATTGAGTCATTCCCGCGCACGATGGCAAGTACGCAGACAAGCAGACAG
AACATACAATCAAATAGCAAGCAGGCAGAAAGAGTGATTAACGTGCAAAA
GAGCGTGAGCATCAAAAATTGCTTTGAATCTTCTCTCGTGAAACCATAAA
AAAATCGAGAAGTGGCATGTAATTTCGTAATCCTTCCTCGTTGGGTTGCC
GTGATTCGGGCTATCTCTGTTTCCCTCTTCCCCCCCCCCCCACTCACATC
CTCGCTCCTATCTATCGAGAATTGTCTACACGAATATACTAACGTGAAAG
ATAATTTGCGATGTATTCGCTTAATAAAAATCGGACCTACATTCATTACA
AAGAAGAATATTTGCTAGTCCGCTGCTTTTCTCTCTTTTGTTGTTAGTTC
CGGCCAACTCGCCCCTTCTTCTTTCCCCTCTTCCTTGTCATTCCGACGAT
ACTTTCCTTCACTCTCTCTTTTCCTCTTCGCCCTACCCCCGCCTTACTTC
CCGGCAGTGGGTTTAAATGGATCGTACCAGTTGATTCGAGTCCTATTTCT
TCTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCCC
TTATTCTTCGCCTCCTTCTTCTTTTTCATCATCTAGTTTGTCTTCTATTC
TGGATCCAGACGAGCGGGTCGGGGGTTGTAATTTATTCCCTTCTCGTTCT
CGCTCGTGGCATAGACCGATGGTATCACGTCCAATTCTCTCAGGAGCGGC
AGCAGTAAAAGCGACCACCACAGGAATAGCAGCCATTACAATCACCGCTG
GCGCGCAAAAGAAGATGAGTCAAACAGCTTCCTCACTCGCTCTCCCTCTC
ACACCCACACGAATCGCTCTCTGCCCACTGCCTCAGCTTTGCCGGTCCAC
GTCTCCCTCCCTTCTTCCCTTCTCCATGTCCTTGGAGAAAAGAGCAGAGA
TTCAAAAGAGCATATTTCATTCCTCTCCCTCTGCTCCATCAACTCCAAGC
AAGCAAAATTCATCCCTCAATTCTCACGCTGCCACAAAAACATCACGATC
ACCATCCCCTCCCCCGCCCC

protein sequence of jgi.p|Nanoce1779_2|600051

>mRNA_7793-protein ID=mRNA_7793-protein|Name=jgi.p|Nanoce1779_2|600051|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MKFCPICSNLLLVELGEISFRFCCQTCPYISSITKKISKTMKLKRKEVDD
VLGGEDAWAAANRTTAACPYCDNMEAFFVQMQIRSADEPMTTFYRCTLCA
NRWSGD*

mRNA from alignment at scaffold_21:346573..348292+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7793 ID=mRNA_7793|Name=jgi.p|Nanoce1779_2|600051|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_21:346573..348292+ (Nannochloropsis oceanica)
ACAGGGGTTTGGAGTTTGATCTAGTCTTGACGGCTTTGCAATCCTTCAGG
CGGAAGGTAGTATCTCCTTACCATCGGTTATCGCAACACTACACAACCTG
TCTGTCCTGCATAACCTAGTTCATGAAGTTCTGCCCCATCTGCTCCAATC
TATTGCTTGTGGAGCTCGGGGAGATCAGCTTTCGATTTTGCTGCCAGACC
TGCCCCTACATTTCGTCTATCACCAAGAAAATCAGTAAGACCATGAAGCT
GAAGCGGAAAGAGGTGGATGATGTCCTCGGTGGGGAAGATGCTTGGGCAG
CCGCGAATCGTACCACCGCAGCTTGCCCGTATTGTGACAACATGGAGGCA
TTCTTCGTCCAGATGCAAATTCGGTCGGCGGATGAGCCCATGACGACATT
TTATAGATGCACGCTCTGTGCCAACAGGTGGTCGGGCGACTAATCAGAGA
GGGAAAGGTGGGTAGGTGTGCATACACGAGTGGAGGCCTTAACAACAATA
GCAAACGAAGGAATAAAGTACAACGACATTCAGGTTTTTGTTTTGTTTGA
TGCATCTTGCAAATCATTTTATCGATGGGCTTCGAGACAGCGCAACAGGG
GCGGGGGAGAGTTTTACGGGATGACCGGAAAGAGGAACACTTTCCGAAGG
CTATTGAGTCATTCCCGCGCACGATGGCAAGTACGCAGACAAGCAGACAG
AACATACAATCAAATAGCAAGCAGGCAGAAAGAGTGATTAACGTGCAAAA
GAGCGTGAGCATCAAAAATTGCTTTGAATCTTCTCTCGTGAAACCATAAA
AAAATCGAGAAGTGGCATGTAATTTCGTAATCCTTCCTCGTTGGGTTGCC
GTGATTCGGGCTATCTCTGTTTCCCTCTTCCCCCCCCCCCCACTCACATC
CTCGCTCCTATCTATCGAGAATTGTCTACACGAATATACTAACGTGAAAG
ATAATTTGCGATGTATTCGCTTAATAAAAATCGGACCTACATTCATTACA
AAGAAGAATATTTGCTAGTCCGCTGCTTTTCTCTCTTTTGTTGTTAGTTC
CGGCCAACTCGCCCCTTCTTCTTTCCCCTCTTCCTTGTCATTCCGACGAT
ACTTTCCTTCACTCTCTCTTTTCCTCTTCGCCCTACCCCCGCCTTACTTC
CCGGCAGTGGGTTTAAATGGATCGTACCAGTTGATTCGAGTCCTATTTCT
TCTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCCC
TTATTCTTCGCCTCCTTCTTCTTTTTCATCATCTAGTTTGTCTTCTATTC
TGGATCCAGACGAGCGGGTCGGGGGTTGTAATTTATTCCCTTCTCGTTCT
CGCTCGTGGCATAGACCGATGGTATCACGTCCAATTCTCTCAGGAGCGGC
AGCAGTAAAAGCGACCACCACAGGAATAGCAGCCATTACAATCACCGCTG
GCGCGCAAAAGAAGATGAGTCAAACAGCTTCCTCACTCGCTCTCCCTCTC
ACACCCACACGAATCGCTCTCTGCCCACTGCCTCAGCTTTGCCGGTCCAC
GTCTCCCTCCCTTCTTCCCTTCTCCATGTCCTTGGAGAAAAGAGCAGAGA
TTCAAAAGAGCATATTTCATTCCTCTCCCTCTGCTCCATCAACTCCAAGC
AAGCAAAATTCATCCCTCAATTCTCACGCTGCCACAAAAACATCACGATC
ACCATCCCCTCCCCCGCCCC

Coding sequence (CDS) from alignment at scaffold_21:346573..348292+

>mRNA_7793 ID=mRNA_7793|Name=jgi.p|Nanoce1779_2|600051|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_21:346573..348292+ (Nannochloropsis oceanica)
ATGAAGTTCTGCCCCATCTGCTCCAATCTATTGCTTGTGGAGCTCGGGGA
GATCAGCTTTCGATTTTGCTGCCAGACCTGCCCCTACATTTCGTCTATCA
CCAAGAAAATCAGTAAGACCATGAAGCTGAAGCGGAAAGAGGTGGATGAT
GTCCTCGGTGGGGAAGATGCTTGGGCAGCCGCGAATCGTACCACCGCAGC
TTGCCCGTATTGTGACAACATGGAGGCATTCTTCGTCCAGATGCAAATTC
GGTCGGCGGATGAGCCCATGACGACATTTTATAGATGCACGCTCTGTGCC
AACAGGTGGTCGGGCGACTAA

Synonyms

Publications