jgi.p|Nanoce1779_2|626128, mRNA_7791 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626128
Unique Name	mRNA_7791
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1362
Alignment location	scaffold_21:339696..341395 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626214
Track	FilteredModels2
ProteinId	626128

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:339696..341395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626128	gene_7791	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626128	mRNA_7791-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7791	CDS_7791	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:339696..341395+
coding sequence from alignment at scaffold_21:339696..341395+

mRNA sequence

>mRNA_7791 ID=mRNA_7791|Name=jgi.p|Nanoce1779_2|626128|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGGCACCTGTGCTTCATACAGACCCCGTGGTCAAGCTGCGAGCGTTGCC
CACAATCCGGGAACGCTGTCACGTCATTTATGCTGCGGCAAAACAGGACG
AGCTTGAGCACTTTGCCTTGCACGAGGAGAAACTGGGGGAGGTGGTGGAT
TATGTGCATGTTGTGATTCAAGAACGCTTCCCAGAGGGGATGAATGCGGT
GCCCAACCACTCTCGGTACCGCCACTTTGAAGCGGGGAATGTGGACCGAC
TGAGTCAGCTCCGTGCGGCATCTGGAGAGCAGGGAGTGGATGCGCGGGAG
ATAGCTCGGCGATTGGTGGACTTGGTGGTGGTGAGTGTTCTGCTTGATGC
TGGGGCAGGGGATAAATGGAAGTATATGGAGGAGGGGACCAGGCAGACAA
TCACGCGCTCAGAAGGGTTGGGGGTTGCGAGTTTTCACATGTTTATGGCG
GGGGCGTTCTCATCGGCGAGCGAGGAGGGGAGTAAGATGCAGGCGGATGC
GGTAGGTCTGCAGGGATTAACGACCGAGGCAATCAAAAGGGGGTTTCAAG
TCGATGGAGAAGCAAACCCCTTGGTTGGGGCTGATGGAAGGGCAGACTTG
CTTCGGCGCTTGGGCAAGGCGTTGGAAGAACACCCTGAATTTTTTTCCTC
GGTCTTGGCGGAAGAGAAGGAAGGAGGGGTGGCCTCTTTCCGTCCCGGCT
ACCTGGTGGATTACTTGTTTGCACAGGCCAAGCCCGGGAGTGAGCCGGCG
GAAGTGACAGTGCATGATCTATGGCAGGCGGTGATGTATGGGTTGGAGTC
TATTTGGCCTGCGGGAAGGACCGTGGTGGAGGGGAAGAATATGGGGGATG
TGTGGCCTCACAGTGCCCTGTTGAAGCACACGGAGATGGATGGAAGGGGG
GACGGGGAGGACGGGGAGGAAGAGGGGGAAGATGCAACCAGAGGCTTAGT
CCCGTTCCACAAGTTGTCGCAGTGGCTGACGTATTCGTTGTTGGAGCCTC
TGGGGGAGGCAGGAATGTTGTTCACGGATACCACGCACTTGACGGGGTTA
CCCGAGTATAGAAATGGAGGCTTGTTTGTTGATTTGGGAGTGTTGGTACC
GAAGAGAGCGTCCATTCTAGATTCTTCAGGACATCTGCCCGATTCGGAGG
TGATTGTTGAATGGAGAGCATTGACGGTGGTGTTATTGGACGAGGTGGCG
AGGCTATTGAGGATCAAGGTAGGGGAGACTGAGGAGGGCTTGCCGCTGGT
GAAGGTCTTGGAAGGGGGGACTTGGACGGCAGGACGGAAGATTGCGAAGG
CGTTGAGGCCGGAGACAGGGGGGCCACCGATCACGATCGTCAGTGATGGA
ACGGTATTCTAA

protein sequence of jgi.p|Nanoce1779_2|626128

>mRNA_7791-protein ID=mRNA_7791-protein|Name=jgi.p|Nanoce1779_2|626128|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MAPVLHTDPVVKLRALPTIRERCHVIYAAAKQDELEHFALHEEKLGEVVD
YVHVVIQERFPEGMNAVPNHSRYRHFEAGNVDRLSQLRAASGEQGVDARE
IARRLVDLVVVSVLLDAGAGDKWKYMEEGTRQTITRSEGLGVASFHMFMA
GAFSSASEEGSKMQADAVGLQGLTTEAIKRGFQVDGEANPLVGADGRADL
LRRLGKALEEHPEFFSSVLAEEKEGGVASFRPGYLVDYLFAQAKPGSEPA
EVTVHDLWQAVMYGLESIWPAGRTVVEGKNMGDVWPHSALLKHTEMDGRG
DGEDGEEEGEDATRGLVPFHKLSQWLTYSLLEPLGEAGMLFTDTTHLTGL
PEYRNGGLFVDLGVLVPKRASILDSSGHLPDSEVIVEWRALTVVLLDEVA
RLLRIKVGETEEGLPLVKVLEGGTWTAGRKIAKALRPETGGPPITIVSDG
TVF*

mRNA from alignment at scaffold_21:339696..341395+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7791 ID=mRNA_7791|Name=jgi.p|Nanoce1779_2|626128|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at scaffold_21:339696..341395+ (Nannochloropsis oceanica)
ATGGCACCTGTGCTTCATACGTAAGGTTTGGGTGTTAAGGTAGGTACCTG
AGATGATGATGGGCATGCAAAGAGGAGGGGCATTCCCTTCGGACGAATAA
ACTTTGAAGAACTTCTGAAAATCGCTCATCATGCTCTGCGGCGATTTTCG
TTGTCATGTGCCAACCACCTGATACAATATCACCCAAGCACAGGGACAAA
CAGCCGCGGCAATAGCAGCGACAGAATAATACGCTTGCCCCCATGTCGTC
GGTCCCGCCGTCACCGCCGCCGGCCGCGTCCTCGTCCACTCCCACGGCCC
CCGCGGTCGGCTCCCCCTGCTTGCAGCAAGCCCTTAAAAAGGCTCGTCTG
GTGCTCAGAGACCCCGTGGTCAAGCTGCGAGCGTTGCCCACAATCCGGGA
ACGCTGTCACGTCATTTATGCTGCGGCAAAACAGGACGAGCTTGAGCACT
TTGCCTTGCACGAGGAGAAACTGGGGGAGGTGGTGGATTATGTGCATGTT
GTGATTCAAGAACGCTTCCCAGAGGGGATGAATGCGGTGCCCAACCACTC
TCGGTACCGCCACTTTGAAGCGGGGAATGTGGACCGACTGAGTCAGCTCC
GTGCGGCATCTGGAGAGCAGGGAGTGGATGCGCGGGAGATAGCTCGGCGA
TTGGTGGACTTGGTGGTGGTGAGTGTTCTGCTTGATGCTGGGGCAGGGGA
TAAATGGAAGTATATGGAGGAGGGGACCAGGCAGACAATCACGCGCTCAG
AAGGGTTGGGGGTTGCGAGTTTTCACATGTTTATGGCGGGGGCGTTCTCA
TCGGCGAGCGAGGAGGGGAGTAAGATGCAGGCGGATGCGGTAGGTCTGCA
GGGATTAACGACCGAGGCAATCAAAAGGGGGTTTCAAGTCGATGGAGAAG
CAAACCCCTTGGTTGGGGCTGATGGAAGGGCAGACTTGCTTCGGCGCTTG
GGCAAGGCGTTGGAAGAACACCCTGAATTTTTTTCCTCGGTCTTGGCGGA
AGAGAAGGAAGGAGGGGTGGCCTCTTTCCGTCCCGGCTACCTGGTGGATT
ACTTGTTTGCACAGGCCAAGCCCGGGAGTGAGCCGGCGGAAGTGACAGTG
CATGATCTATGGCAGGCGGTGATGTATGGGTTGGAGTCTATTTGGCCTGC
GGGAAGGACCGTGGTGGAGGGGAAGAATATGGGGGATGTGTGGCCTCACA
GTGCCCTGTTGAAGCACACGGAGATGGATGGAAGGGGGGACGGGGAGGAC
GGGGAGGAAGAGGGGGAAGATGCAACCAGAGGCTTAGTCCCGTTCCACAA
GTTGTCGCAGTGGCTGACGTATTCGTTGTTGGAGCCTCTGGGGGAGGCAG
GAATGTTGTTCACGGATACCACGCACTTGACGGGGTTACCCGAGTATAGA
AATGGAGGCTTGTTTGTTGATTTGGGAGTGTTGGTACCGAAGAGAGCGTC
CATTCTAGATTCTTCAGGACATCTGCCCGATTCGGAGGTGATTGTTGAAT
GGAGAGCATTGACGGTGGTGTTATTGGACGAGGTGGCGAGGCTATTGAGG
ATCAAGGTAGGGGAGACTGAGGAGGGCTTGCCGCTGGTGAAGGTCTTGGA
AGGGGGGACTTGGACGGCAGGACGGAAGATTGCGAAGGCGTTGAGGCCGG
AGACAGGGGGGCCACCGATCACGATCGTCAGTGATGGAACGGTATTCTAA

Coding sequence (CDS) from alignment at scaffold_21:339696..341395+

>mRNA_7791 ID=mRNA_7791|Name=jgi.p|Nanoce1779_2|626128|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_21:339696..341395+ (Nannochloropsis oceanica)
ATGGCACCTGTGCTTCATACAGACCCCGTGGTCAAGCTGCGAGCGTTGCC
CACAATCCGGGAACGCTGTCACGTCATTTATGCTGCGGCAAAACAGGACG
AGCTTGAGCACTTTGCCTTGCACGAGGAGAAACTGGGGGAGGTGGTGGAT
TATGTGCATGTTGTGATTCAAGAACGCTTCCCAGAGGGGATGAATGCGGT
GCCCAACCACTCTCGGTACCGCCACTTTGAAGCGGGGAATGTGGACCGAC
TGAGTCAGCTCCGTGCGGCATCTGGAGAGCAGGGAGTGGATGCGCGGGAG
ATAGCTCGGCGATTGGTGGACTTGGTGGTGGTGAGTGTTCTGCTTGATGC
TGGGGCAGGGGATAAATGGAAGTATATGGAGGAGGGGACCAGGCAGACAA
TCACGCGCTCAGAAGGGTTGGGGGTTGCGAGTTTTCACATGTTTATGGCG
GGGGCGTTCTCATCGGCGAGCGAGGAGGGGAGTAAGATGCAGGCGGATGC
GGTAGGTCTGCAGGGATTAACGACCGAGGCAATCAAAAGGGGGTTTCAAG
TCGATGGAGAAGCAAACCCCTTGGTTGGGGCTGATGGAAGGGCAGACTTG
CTTCGGCGCTTGGGCAAGGCGTTGGAAGAACACCCTGAATTTTTTTCCTC
GGTCTTGGCGGAAGAGAAGGAAGGAGGGGTGGCCTCTTTCCGTCCCGGCT
ACCTGGTGGATTACTTGTTTGCACAGGCCAAGCCCGGGAGTGAGCCGGCG
GAAGTGACAGTGCATGATCTATGGCAGGCGGTGATGTATGGGTTGGAGTC
TATTTGGCCTGCGGGAAGGACCGTGGTGGAGGGGAAGAATATGGGGGATG
TGTGGCCTCACAGTGCCCTGTTGAAGCACACGGAGATGGATGGAAGGGGG
GACGGGGAGGACGGGGAGGAAGAGGGGGAAGATGCAACCAGAGGCTTAGT
CCCGTTCCACAAGTTGTCGCAGTGGCTGACGTATTCGTTGTTGGAGCCTC
TGGGGGAGGCAGGAATGTTGTTCACGGATACCACGCACTTGACGGGGTTA
CCCGAGTATAGAAATGGAGGCTTGTTTGTTGATTTGGGAGTGTTGGTACC
GAAGAGAGCGTCCATTCTAGATTCTTCAGGACATCTGCCCGATTCGGAGG
TGATTGTTGAATGGAGAGCATTGACGGTGGTGTTATTGGACGAGGTGGCG
AGGCTATTGAGGATCAAGGTAGGGGAGACTGAGGAGGGCTTGCCGCTGGT
GAAGGTCTTGGAAGGGGGGACTTGGACGGCAGGACGGAAGATTGCGAAGG
CGTTGAGGCCGGAGACAGGGGGGCCACCGATCACGATCGTCAGTGATGGA
ACGGTATTCTAAATGGCACCTGTGCTTCATACAGACCCCGTGGTCAAGCT
GCGAGCGTTGCCCACAATCCGGGAACGCTGTCACGTCATTTATGCTGCGG
CAAAACAGGACGAGCTTGAGCACTTTGCCTTGCACGAGGAGAAACTGGGG
GAGGTGGTGGATTATGTGCATGTTGTGATTCAAGAACGCTTCCCAGAGGG
GATGAATGCGGTGCCCAACCACTCTCGGTACCGCCACTTTGAAGCGGGGA
ATGTGGACCGACTGAGTCAGCTCCGTGCGGCATCTGGAGAGCAGGGAGTG
GATGCGCGGGAGATAGCTCGGCGATTGGTGGACTTGGTGGTGGTGAGTGT
TCTGCTTGATGCTGGGGCAGGGGATAAATGGAAGTATATGGAGGAGGGGA
CCAGGCAGACAATCACGCGCTCAGAAGGGTTGGGGGTTGCGAGTTTTCAC
ATGTTTATGGCGGGGGCGTTCTCATCGGCGAGCGAGGAGGGGAGTAAGAT
GCAGGCGGATGCGGTAGGTCTGCAGGGATTAACGACCGAGGCAATCAAAA
GGGGGTTTCAAGTCGATGGAGAAGCAAACCCCTTGGTTGGGGCTGATGGA
AGGGCAGACTTGCTTCGGCGCTTGGGCAAGGCGTTGGAAGAACACCCTGA
ATTTTTTTCCTCGGTCTTGGCGGAAGAGAAGGAAGGAGGGGTGGCCTCTT
TCCGTCCCGGCTACCTGGTGGATTACTTGTTTGCACAGGCCAAGCCCGGG
AGTGAGCCGGCGGAAGTGACAGTGCATGATCTATGGCAGGCGGTGATGTA
TGGGTTGGAGTCTATTTGGCCTGCGGGAAGGACCGTGGTGGAGGGGAAGA
ATATGGGGGATGTGTGGCCTCACAGTGCCCTGTTGAAGCACACGGAGATG
GATGGAAGGGGGGACGGGGAGGACGGGGAGGAAGAGGGGGAAGATGCAAC
CAGAGGCTTAGTCCCGTTCCACAAGTTGTCGCAGTGGCTGACGTATTCGT
TGTTGGAGCCTCTGGGGGAGGCAGGAATGTTGTTCACGGATACCACGCAC
TTGACGGGGTTACCCGAGTATAGAAATGGAGGCTTGTTTGTTGATTTGGG
AGTGTTGGTACCGAAGAGAGCGTCCATTCTAGATTCTTCAGGACATCTGC
CCGATTCGGAGGTGATTGTTGAATGGAGAGCATTGACGGTGGTGTTATTG
GACGAGGTGGCGAGGCTATTGAGGATCAAGGTAGGGGAGACTGAGGAGGG
CTTGCCGCTGGTGAAGGTCTTGGAAGGGGGGACTTGGACGGCAGGACGGA
AGATTGCGAAGGCGTTGAGGCCGGAGACAGGGGGGCCACCGATCACGATC
GTCAGTGATGGAACGGTATTCTAA

Synonyms

Publications