jgi.p|Nanoce1779_2|574100, mRNA_779 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574100
Unique Name	mRNA_779
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1118
Alignment location	scaffold_2:412691..414921 +

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Properties


Property Name	Value
TranscriptId	574186
Track	FilteredModels2
ProteinId	574100

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:412691..414921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574100	gene_779	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574100	mRNA_779-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_779	CDS_779	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:412691..414921+
coding sequence from alignment at scaffold_2:412691..414921+

mRNA sequence

>mRNA_779 ID=mRNA_779|Name=jgi.p|Nanoce1779_2|574100|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp
ACAGCGAGGGACTTCTTTGCGGCCAGGACACGTCGTAAGCAAGCGGCAAA
TATTTCGGGAAAACATGACCGACTTCATCCCCGAGTTTAAGTTGATTCTA
GTTGGAGATGGTGGAGTGGGTAAGACGACGTTTGTGCGTCGTCATTTGAC
GGGAGAATTTGAGAAGCGCTACGTTGCGACCTTGGGGGTGGAGGTGCACC
CGCTGTTGTTCCACACGAACCGCGGTCAGATCAAGTTCAATGTGTGGGAC
ACGGCGGGACAGGAGAAATTTGGGGGTCTGCGGGACGGTTATTATATTCA
GGGGCAGTGTGCGATCATCATGTTTGATGTCACGAGTCGAATTACGTATA
AAAACGTGCCCAACTGGCATAGAGACCTGACGAGGGTGTGTGAGAACATC
CCTATTGTACTGTGCGGGAACAAGGTGGAGATCAAGGACCGGAAGGTGAA
GCCGAAGCAAATCATTTTCCATCGCAAGAAGAACCTGCAGTATTATGACA
TTTCTGCCAAATCCAACTACAACTTCGAGAAGCCTTTCCTCTGGTTGGCG
CGCAAACTGACGGGCGACAACAACCTGCACTTTGTGGAGGCGCCCGCGCT
GGCTCCGCCCGAGGTGGCCTACGACCAGAACGACATGGTTCGCTACGAGC
AAGAGCTGACCGAGGCTGCTGCCATGCCCCTGCCCGATGAGGATGATGAC
TTGTAAAGCAGCAGTGTTAGGACCAGAAGCAGCAGCAACGGCACGAGCAA
CAGGCTGAACTTAAGGAGGTGTGGCAGCAGCACCACCACCAGCTGCAGAG
GCAGCAGTAGTAGCAGCAGCAGCAACCTCAAGGGAGATGATAGGTGGATG
TGCTCTTTCTTGTGTGTTTGTGCCTTGTGGTGGATGGGGACTCCGTGTAG
ATGAAGGAGGTGGGAGGAGGAAGGGGGAAGGAAGAATGACAGGCAGTGCC
GTTGTCATTGGTGGGGAGAAAGAGGGAGCTCAACACCCAGGGTGGAGAAG
AATAGGGCCAGAGAGATGAGTAATAAAGGCAGACGCAGATGCTGACGCGC
GACAAGACAAAATGGGAACGACCCTCCAGGGCACTAGAAAGAAAGAAACA
AAACGACACGACACGAAA

protein sequence of jgi.p|Nanoce1779_2|574100

>mRNA_779-protein ID=mRNA_779-protein|Name=jgi.p|Nanoce1779_2|574100|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFH
TNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN
WHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKS
NYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTE
AAAMPLPDEDDDL*

mRNA from alignment at scaffold_2:412691..414921+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_779 ID=mRNA_779|Name=jgi.p|Nanoce1779_2|574100|organism=Nannochloropsis oceanica|type=mRNA|length=2231bp|location=Sequence derived from alignment at scaffold_2:412691..414921+ (Nannochloropsis oceanica)
ACAGCGAGGGACTTCTTTGCGGCCAGGACACGTCGTAAGCAAGCGGCAAA
TATTTCGGGAAAACATGGTACGTGCGAGGACGATTGACGAAAGGACGAGG
AGGGAGGCTGGGAGAGGACGAGATGATGGGGGAACACAAAGTGCGGACCC
TTCGCTTGAGACAGGGCGGAAGACATGTAGTGTAAGAAAAAGAAAGAGGG
GCGCCTGAAATGTTGTTTGTAGTAGTGTGGAGGTAGGATGCTCTGCAAGA
TTGGTGTTGCATGGGGTTCCTCACGTCATGCTTCTTGGCCTTCCATGAGG
CGTTGTGGGAAGAGGTGGCCATGGGAGGTACATGGGAAGTGCTGACTCAA
GATGTTAAGCATCCTCTCGCTCTCACCCAAATAATATATTACCAAGACAT
ACTCACCCACTACTCCTCTCTACATACCTCCTTTCTCCCCTCTTTACGAC
CCCACCCACCCCTTTCTCCCCTCCTTTCCTCCAATCCCTTCCCTTACAGA
CCGACTTCATCCCCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGGAGTG
GGTAAGACGACGTTTGTGCGTCGTCATTTGACGGGAGAATTTGAGAAGCG
CTACGTTGCGACCTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCACACGA
ACCGCGGTCAGATCAAGTTCAATGTGTGGGACACGGCGGGACAGGAGAAA
TTTGGGGGTCTGCGGGACGGTTATTATATTCAGGGGCAGTGTGCGATCAT
CATGTTTGATGTCACGAGTCGAATTACGTATAAAAACGTGCCCAACTGGC
ATAGAGACCTGACGAGGGTGTGTGAGAACATCCCTATTGTACTGTGCGGG
AACAAGGTGGAGATCAAGGTCCGTTTTTGTGGTGGAAGTGGGTCGGGGTG
AATGGAACGAGAAGGTGACATATGAGTCGGCGTCTGTGCTCGAAGGACGC
TGGTAGGGGGGGGGGATGATCTCCAGGGGACTGTGTGAGCGTGCATGATA
TTCCTCATTTCATTGGTGGGTCGAAGGACGGATAAGAATCTGTTTGTTGC
GGACCTTTTCGTCTCCTTACATAGCGTCGGTCTGTATGCTCACCGTTTCT
CCCTCCCTCCCTCCCTACTCTTCCTCCCTCCCTCCTTCCTTCCTCCATCG
ACAGGACCGGAAGGTGAAGCCGAAGCAAATCATTTTCCATCGCAAGAAGA
ACCTGCAGTATTATGACATTTCTGCCAAATCCAACTACAACTTCGAGAAG
CCTTTCCTCTGGTTGGCGCGCAAACTGACGGGGTAAGGACAAGACCGCGG
GGAAGGAGGGAAATAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGAGGAAGACGTTCAGAGGTCTGGAGTGTGT
TGTCTTGGTGAGTGCATTGGTGATAAGCATACAATTATGGTAAGCCTCAC
TCCATCCTTGACTCCCTACTTATTCACGTCCAGCGACAACAACCTGCACT
TTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGGTGGCCTACGACCAGAAC
GACATGGTTCGCTACGAGCAAGAGCTGACCGAGGCTGCTGCCATGCCCCT
GCCCGATGTACGTGTACATGGGCATTTGTGTCTCGTGCTTCTTGTCTTTC
CCTCTCACTGTCTCTATTTTCCTCTCCTCTCGTTAACTCTTTATCTCATC
TCCTTTCGCAATGGTTTGCTGGATTGTGGCGTTTGGTCGGGATGAATTTT
GTTATTCAAACACTAGCTCATTTCTTTTTCCTTTTTCCTACACATATTTA
GGAGGATGATGACTTGTAAAGCAGCAGTGTTAGGACCAGAAGCAGCAGCA
ACGGCACGAGCAACAGGCTGAACTTAAGGAGGTGTGGCAGCAGCACCACC
ACCAGCTGCAGAGGCAGCAGTAGTAGCAGCAGCAGCAACCTCAAGGGAGA
TGATAGGTGGATGTGCTCTTTCTTGTGTGTTTGTGCCTTGTGGTGGATGG
GGACTCCGTGTAGATGAAGGAGGTGGGAGGAGGAAGGGGGAAGGAAGAAT
GACAGGCAGTGCCGTTGTCATTGGTGGGGAGAAAGAGGGAGCTCAACACC
CAGGGTGGAGAAGAATAGGGCCAGAGAGATGAGTAATAAAGGCAGACGCA
GATGCTGACGCGCGACAAGACAAAATGGGAACGACCCTCCAGGGCACTAG
AAAGAAAGAAACAAAACGACACGACACGAAA

Coding sequence (CDS) from alignment at scaffold_2:412691..414921+

>mRNA_779 ID=mRNA_779|Name=jgi.p|Nanoce1779_2|574100|organism=Nannochloropsis oceanica|type=CDS|length=3210bp|location=Sequence derived from alignment at scaffold_2:412691..414921+ (Nannochloropsis oceanica)
ATGACCGACTTCATCCCCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGG
AGTGGGTAAGACGACGTTTGTGCGTCGTCATTTGACGGGAGAATTTGAGA
AGCGCTACGTTGCGACCTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCAC
ACGAACCGCGGTCAGATCAAGTTCAATGTGTGGGACACGGCGGGACAGGA
GAAATTTGGGGGTCTGCGGGACGGTTATTATATTCAGGGGCAGTGTGCGA
TCATCATGTTTGATGTCACGAGTCGAATTACGTATAAAAACGTGCCCAAC
TGGCATAGAGACCTGACGAGGGTGTGTGAGAACATCCCTATTGTACTGTG
CGGGAACAAGGTGGAGATCAAGGACCGGAAGGTGAAGCCGAAGCAAATCA
TTTTCCATCGCAAGAAGAACCTGCAGTATTATGACATTTCTGCCAAATCC
AACTACAACTTCGAGAAGCCTTTCCTCTGGTTGGCGCGCAAACTGACGGG
CGACAACAACCTGCACTTTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGG
TGGCCTACGACCAGAACGACATGGTTCGCTACGAGCAAGAGCTGACCGAG
GCTGCTGCCATGCCCCTGCCCGATGAGGATGATGACTTGTAAATGACCGA
CTTCATCCCCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGGAGTGGGTA
AGACGACGTTTGTGCGTCGTCATTTGACGGGAGAATTTGAGAAGCGCTAC
GTTGCGACCTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCACACGAACCG
CGGTCAGATCAAGTTCAATGTGTGGGACACGGCGGGACAGGAGAAATTTG
GGGGTCTGCGGGACGGTTATTATATTCAGGGGCAGTGTGCGATCATCATG
TTTGATGTCACGAGTCGAATTACGTATAAAAACGTGCCCAACTGGCATAG
AGACCTGACGAGGGTGTGTGAGAACATCCCTATTGTACTGTGCGGGAACA
AGGTGGAGATCAAGGACCGGAAGGTGAAGCCGAAGCAAATCATTTTCCAT
CGCAAGAAGAACCTGCAGTATTATGACATTTCTGCCAAATCCAACTACAA
CTTCGAGAAGCCTTTCCTCTGGTTGGCGCGCAAACTGACGGGCGACAACA
ACCTGCACTTTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGGTGGCCTAC
GACCAGAACGACATGGTTCGCTACGAGCAAGAGCTGACCGAGGCTGCTGC
CATGCCCCTGCCCGATGAGGATGATGACTTGTAAATGACCGACTTCATCC
CCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGGAGTGGGTAAGACGACG
TTTGTGCGTCGTCATTTGACGGGAGAATTTGAGAAGCGCTACGTTGCGAC
CTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCACACGAACCGCGGTCAGA
TCAAGTTCAATGTGTGGGACACGGCGGGACAGGAGAAATTTGGGGGTCTG
CGGGACGGTTATTATATTCAGGGGCAGTGTGCGATCATCATGTTTGATGT
CACGAGTCGAATTACGTATAAAAACGTGCCCAACTGGCATAGAGACCTGA
CGAGGGTGTGTGAGAACATCCCTATTGTACTGTGCGGGAACAAGGTGGAG
ATCAAGGACCGGAAGGTGAAGCCGAAGCAAATCATTTTCCATCGCAAGAA
GAACCTGCAGTATTATGACATTTCTGCCAAATCCAACTACAACTTCGAGA
AGCCTTTCCTCTGGTTGGCGCGCAAACTGACGGGCGACAACAACCTGCAC
TTTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGGTGGCCTACGACCAGAA
CGACATGGTTCGCTACGAGCAAGAGCTGACCGAGGCTGCTGCCATGCCCC
TGCCCGATGAGGATGATGACTTGTAAATGACCGACTTCATCCCCGAGTTT
AAGTTGATTCTAGTTGGAGATGGTGGAGTGGGTAAGACGACGTTTGTGCG
TCGTCATTTGACGGGAGAATTTGAGAAGCGCTACGTTGCGACCTTGGGGG
TGGAGGTGCACCCGCTGTTGTTCCACACGAACCGCGGTCAGATCAAGTTC
AATGTGTGGGACACGGCGGGACAGGAGAAATTTGGGGGTCTGCGGGACGG
TTATTATATTCAGGGGCAGTGTGCGATCATCATGTTTGATGTCACGAGTC
GAATTACGTATAAAAACGTGCCCAACTGGCATAGAGACCTGACGAGGGTG
TGTGAGAACATCCCTATTGTACTGTGCGGGAACAAGGTGGAGATCAAGGA
CCGGAAGGTGAAGCCGAAGCAAATCATTTTCCATCGCAAGAAGAACCTGC
AGTATTATGACATTTCTGCCAAATCCAACTACAACTTCGAGAAGCCTTTC
CTCTGGTTGGCGCGCAAACTGACGGGCGACAACAACCTGCACTTTGTGGA
GGCGCCCGCGCTGGCTCCGCCCGAGGTGGCCTACGACCAGAACGACATGG
TTCGCTACGAGCAAGAGCTGACCGAGGCTGCTGCCATGCCCCTGCCCGAT
GAGGATGATGACTTGTAAATGACCGACTTCATCCCCGAGTTTAAGTTGAT
TCTAGTTGGAGATGGTGGAGTGGGTAAGACGACGTTTGTGCGTCGTCATT
TGACGGGAGAATTTGAGAAGCGCTACGTTGCGACCTTGGGGGTGGAGGTG
CACCCGCTGTTGTTCCACACGAACCGCGGTCAGATCAAGTTCAATGTGTG
GGACACGGCGGGACAGGAGAAATTTGGGGGTCTGCGGGACGGTTATTATA
TTCAGGGGCAGTGTGCGATCATCATGTTTGATGTCACGAGTCGAATTACG
TATAAAAACGTGCCCAACTGGCATAGAGACCTGACGAGGGTGTGTGAGAA
CATCCCTATTGTACTGTGCGGGAACAAGGTGGAGATCAAGGACCGGAAGG
TGAAGCCGAAGCAAATCATTTTCCATCGCAAGAAGAACCTGCAGTATTAT
GACATTTCTGCCAAATCCAACTACAACTTCGAGAAGCCTTTCCTCTGGTT
GGCGCGCAAACTGACGGGCGACAACAACCTGCACTTTGTGGAGGCGCCCG
CGCTGGCTCCGCCCGAGGTGGCCTACGACCAGAACGACATGGTTCGCTAC
GAGCAAGAGCTGACCGAGGCTGCTGCCATGCCCCTGCCCGATGAGGATGA
TGACTTGTAA

Synonyms

Publications