jgi.p|Nanoce1779_2|568129, mRNA_7789 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568129
Unique Name	mRNA_7789
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1473
Alignment location	scaffold_21:334808..336670 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568215
Track	FilteredModels2
ProteinId	568129

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:334808..336670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568129	gene_7789	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568129	mRNA_7789-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7789	CDS_7789	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:334808..336670+
coding sequence from alignment at scaffold_21:334808..336670+

mRNA sequence

>mRNA_7789 ID=mRNA_7789|Name=jgi.p|Nanoce1779_2|568129|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGGCCAATGCAGACGTGCACGATAGACCCCCAAAGAGCAGATATTCCGC
CTCCACATTCACCAACAAATCAAAGAAGAAGCTACATGATACCAAAAGTG
AAAGTATCGAAAAGAAGGAGAGTGACGAACAACGGCGGATTGCCCGCTTC
CTGGCGTGGCTTAAGGCACACGGCGCGCGTTTCGACAAGATCGAGTGGCC
TTCCTACCGATTCGGTGTCCGCGGCGCCGTTGCTTTGTCAGATATAGACA
CTGAAGAAGACATTGCTAGCGTCCCGGAACATCTTTTGCTTACTCCGCTT
GTGCTGTTGGAGAATCCAGAGATTGGGCATGTGTTCGAAGAGAACCTCGC
GGAATATTCCGATGAAGACATGCTGGCCATTTTAGTCATGCACGAACGTG
GAAAAGGCGAAGCCAGCTTCTTCTTTCCTTATCTGGATACTCTCCCGCAG
CTGCCAGACAGTCTTATGGTGTGGAATGACGAGGCCTTAAGCTGGCTACA
GAGCGAAGATCTTTGTATGCAGGTGCACATGCGGAGGAGTCAGATGGCAG
CGCATTACACGAGGTTGGTCGAAGATGGATTGAAGGCGAATTGGCCTCAT
CTCTTTGGAGCTAACCAAGTAGAAAAGGACGAGAAAGATGAACAGACGCT
CCCTCCCTTTTATTCCTCCTATCCTACTTCCTCCTTTTCCGATGACAACA
ACGGGGACACGGAGGAAGAGGAAAATGATGACGATGATGACCCGTACTCT
TTCAAAAACTTTGCCTTTGCTTGGCAAAGTATCCAAGCGCGGGCATTTGG
TCGGCGCTTGCCGTATTCTGCTTTGGTCCCTTTCTGTGATGGGTTTAATC
ACGCTAATGTCGCGATCAAATATCGACTGGAGGCAGGGGGCAGCAATGCG
GGGGCGGGTAGTAGTAATAAGGATACCGCCACCAGTTGCATCTATGTTGG
TGGTGTGCTGGAGCACGTAGAGGCGAAGAAGCACCAACAAGAGCAGCAGC
TGCGGCAAGGAAAAGAAGGCAAAGGAGAGGGCGGGGCGAAGTCCCCTCAG
CTTCCAACTCGTGCCTTTCACCTCTTCCCCAGCGGCGAGAATCGCTACAA
AAAGGTAGTTTATGAAGCCGAGGCCCTGAGGGCGTTGCAAGCGCAGGTAG
AAGAAGTGCTTTCTGCTTTTCCCACCTCTTTGGAGGAGGACGAGGTGGCG
CTGAAAGAGTGTACGACAGGAGAAGAGGTAGGAGGAGAAGGAAGGAGGGA
GGGAGGAAGTGTGAATGCGAACTGTCGAATTGCAGCATTGACGTACCGAT
TGACTCGGAAACGGATTTTGAAGCACCATTTGGGGATGATCCAAAAGGAG
ATACGAGCCTTGGTGGAAGATGAGGAGGACGACAGAAAGGGACTCGACAG
AAGAAATAGCCAGAGTGGTAACAGAAGAGAGATAATACGATTGACTGAAA
GATTGGGATTGAATGATTCATGA

protein sequence of jgi.p|Nanoce1779_2|568129

>mRNA_7789-protein ID=mRNA_7789-protein|Name=jgi.p|Nanoce1779_2|568129|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MANADVHDRPPKSRYSASTFTNKSKKKLHDTKSESIEKKESDEQRRIARF
LAWLKAHGARFDKIEWPSYRFGVRGAVALSDIDTEEDIASVPEHLLLTPL
VLLENPEIGHVFEENLAEYSDEDMLAILVMHERGKGEASFFFPYLDTLPQ
LPDSLMVWNDEALSWLQSEDLCMQVHMRRSQMAAHYTRLVEDGLKANWPH
LFGANQVEKDEKDEQTLPPFYSSYPTSSFSDDNNGDTEEEENDDDDDPYS
FKNFAFAWQSIQARAFGRRLPYSALVPFCDGFNHANVAIKYRLEAGGSNA
GAGSSNKDTATSCIYVGGVLEHVEAKKHQQEQQLRQGKEGKGEGGAKSPQ
LPTRAFHLFPSGENRYKKVVYEAEALRALQAQVEEVLSAFPTSLEEDEVA
LKECTTGEEVGGEGRREGGSVNANCRIAALTYRLTRKRILKHHLGMIQKE
IRALVEDEEDDRKGLDRRNSQSGNRREIIRLTERLGLNDS*

mRNA from alignment at scaffold_21:334808..336670+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7789 ID=mRNA_7789|Name=jgi.p|Nanoce1779_2|568129|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at scaffold_21:334808..336670+ (Nannochloropsis oceanica)
ATGGCCAATGCAGACGTGCACGATAGACCCCCAAAGAGCAGATATTCCGC
CTCCACATTCACCAACAAATCAAAGAAGAAGCTACATGATACCAAAAGTG
AAAGTATCGAAAAGAAGGAGAGTGACGAACAACGGCGGATTGCCCGCTTC
CTGGCGTGGCTTAAGGCACACGGCGCGCGTTTCGACAAGATCGAGTGGCC
TTCCTACCGATTCGGTGTCCGCGGCGCCGTTGCTTTGTCAGATATAGACA
CTGAAGAAGACATTGCTAGCGTCCCGGAACATCTTTTGCTTACTCCGCTT
GTGCTGTTGGAGAATCCAGAGATTGGGCATGTGTTCGAAGAGAACCTCGC
GGAATATTCCGATGAAGACATGCTGGCCATTTTAGTCATGCACGAACGTG
GAAAAGGCGAAGCCAGCTTCTTCTTTCCTTATCTGGATACTCTCCCGCAG
CTGCCAGACAGTCTTATGGTGTGGAATGACGAGGCCTTAAGCTGGCTACA
GAGCGAAGATCTTTGTATGCAGGTGCACATGCGGAGGAGTCAGATGGCAG
CGCATTACACGAGGTTGGTCGAAGATGGATTGAAGGCGAATTGGCCTCAT
CTCTTTGGAGCTAACCAAGTAGAAAAGGACGAGAAAGATGAACAGACGCT
CCCTCCCTTTTATTCCTCCTATCCTACTTCCTCCTTTTCCGATGACAACA
ACGGGGACACGGAGGAAGAGGAAAATGATGACGATGATGACCCGTACTCT
TTCAAAAACTTTGCCTTTGCTTGGCAAAGTATCCAAGCGCGGGCATTTGG
TCGGCGCTTGCCGTATTCTGCTTTGGTCCCTTTCTGTGATGGGTTTAATC
ACGCTAATGTCGCGATCAAATATCGACTGGAGGCAGGGGGCAGCAATGCG
GGGGCGGGTAGTAGTAATAAGGATACCGCCACCAGTTGCATCTATGTTGG
TGGTGTGCTGGAGCACGTAGAGGCGAAGAAGCACCAACAAGAGCAGCAGC
TGCGGCAAGGAAAAGAAGGCAAAGGAGAGGGCGGGGCGAAGTCCCCTCAG
CTTCCAACTCGTGCCTTTCACCTCTTCCCCAGCGGCGAGAATCGCTACAA
AAAGGGTGAAGAAGTCTGCACTTCCTATGGGCGACGAACCAATGAAGAGC
TTCTTCTTTCCTACGGCTTTTCCCTTCTTGACAATGAGCATGAGTTCATA
GACCTTCCTATGCCAGGCATCCCTTCCCCCCCGTCCTGGTTCGGTGCCTC
GCTGGCCCGGCTTGGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGGGAAGAAGATAGAAACCGTCGATGTGTTTAAGGCC
TCGCACGCCTTGGCCGCGGGAGCAACTGAGATCAAATTGGAATTACTCGC
CTACTTTCGGTCGCTGGTGGCGTGCCGTTATTTCAAAGATACGGACGGTG
AGGAGGTGGGGAGCACAATTGATTACTTGCGGCCTTTTCCATCAGTAGTT
TATGAAGCCGAGGCCCTGAGGGCGTTGCAAGCGCAGGTAGAAGAAGTGCT
TTCTGCTTTTCCCACCTCTTTGGAGGAGGACGAGGTGGCGCTGAAAGAGT
GTACGACAGGAGAAGAGGTAGGAGGAGAAGGAAGGAGGGAGGGAGGAAGT
GTGAATGCGAACTGTCGAATTGCAGCATTGACGTACCGATTGACTCGGAA
ACGGATTTTGAAGCACCATTTGGGGATGATCCAAAAGGAGATACGAGCCT
TGGTGGAAGATGAGGAGGACGACAGAAAGGGACTCGACAGAAGAAATAGC
CAGAGTGGTAACAGAAGAGAGATAATACGATTGACTGAAAGATTGGGATT
GAATGATTCATGA

Coding sequence (CDS) from alignment at scaffold_21:334808..336670+

>mRNA_7789 ID=mRNA_7789|Name=jgi.p|Nanoce1779_2|568129|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_21:334808..336670+ (Nannochloropsis oceanica)
ATGGCCAATGCAGACGTGCACGATAGACCCCCAAAGAGCAGATATTCCGC
CTCCACATTCACCAACAAATCAAAGAAGAAGCTACATGATACCAAAAGTG
AAAGTATCGAAAAGAAGGAGAGTGACGAACAACGGCGGATTGCCCGCTTC
CTGGCGTGGCTTAAGGCACACGGCGCGCGTTTCGACAAGATCGAGTGGCC
TTCCTACCGATTCGGTGTCCGCGGCGCCGTTGCTTTGTCAGATATAGACA
CTGAAGAAGACATTGCTAGCGTCCCGGAACATCTTTTGCTTACTCCGCTT
GTGCTGTTGGAGAATCCAGAGATTGGGCATGTGTTCGAAGAGAACCTCGC
GGAATATTCCGATGAAGACATGCTGGCCATTTTAGTCATGCACGAACGTG
GAAAAGGCGAAGCCAGCTTCTTCTTTCCTTATCTGGATACTCTCCCGCAG
CTGCCAGACAGTCTTATGGTGTGGAATGACGAGGCCTTAAGCTGGCTACA
GAGCGAAGATCTTTGTATGCAGGTGCACATGCGGAGGAGTCAGATGGCAG
CGCATTACACGAGGTTGGTCGAAGATGGATTGAAGGCGAATTGGCCTCAT
CTCTTTGGAGCTAACCAAGTAGAAAAGGACGAGAAAGATGAACAGACGCT
CCCTCCCTTTTATTCCTCCTATCCTACTTCCTCCTTTTCCGATGACAACA
ACGGGGACACGGAGGAAGAGGAAAATGATGACGATGATGACCCGTACTCT
TTCAAAAACTTTGCCTTTGCTTGGCAAAGTATCCAAGCGCGGGCATTTGG
TCGGCGCTTGCCGTATTCTGCTTTGGTCCCTTTCTGTGATGGGTTTAATC
ACGCTAATGTCGCGATCAAATATCGACTGGAGGCAGGGGGCAGCAATGCG
GGGGCGGGTAGTAGTAATAAGGATACCGCCACCAGTTGCATCTATGTTGG
TGGTGTGCTGGAGCACGTAGAGGCGAAGAAGCACCAACAAGAGCAGCAGC
TGCGGCAAGGAAAAGAAGGCAAAGGAGAGGGCGGGGCGAAGTCCCCTCAG
CTTCCAACTCGTGCCTTTCACCTCTTCCCCAGCGGCGAGAATCGCTACAA
AAAGGTAGTTTATGAAGCCGAGGCCCTGAGGGCGTTGCAAGCGCAGGTAG
AAGAAGTGCTTTCTGCTTTTCCCACCTCTTTGGAGGAGGACGAGGTGGCG
CTGAAAGAGTGTACGACAGGAGAAGAGGTAGGAGGAGAAGGAAGGAGGGA
GGGAGGAAGTGTGAATGCGAACTGTCGAATTGCAGCATTGACGTACCGAT
TGACTCGGAAACGGATTTTGAAGCACCATTTGGGGATGATCCAAAAGGAG
ATACGAGCCTTGGTGGAAGATGAGGAGGACGACAGAAAGGGACTCGACAG
AAGAAATAGCCAGAGTGGTAACAGAAGAGAGATAATACGATTGACTGAAA
GATTGGGATTGAATGATTCATGAATGGCCAATGCAGACGTGCACGATAGA
CCCCCAAAGAGCAGATATTCCGCCTCCACATTCACCAACAAATCAAAGAA
GAAGCTACATGATACCAAAAGTGAAAGTATCGAAAAGAAGGAGAGTGACG
AACAACGGCGGATTGCCCGCTTCCTGGCGTGGCTTAAGGCACACGGCGCG
CGTTTCGACAAGATCGAGTGGCCTTCCTACCGATTCGGTGTCCGCGGCGC
CGTTGCTTTGTCAGATATAGACACTGAAGAAGACATTGCTAGCGTCCCGG
AACATCTTTTGCTTACTCCGCTTGTGCTGTTGGAGAATCCAGAGATTGGG
CATGTGTTCGAAGAGAACCTCGCGGAATATTCCGATGAAGACATGCTGGC
CATTTTAGTCATGCACGAACGTGGAAAAGGCGAAGCCAGCTTCTTCTTTC
CTTATCTGGATACTCTCCCGCAGCTGCCAGACAGTCTTATGGTGTGGAAT
GACGAGGCCTTAAGCTGGCTACAGAGCGAAGATCTTTGTATGCAGGTGCA
CATGCGGAGGAGTCAGATGGCAGCGCATTACACGAGGTTGGTCGAAGATG
GATTGAAGGCGAATTGGCCTCATCTCTTTGGAGCTAACCAAGTAGAAAAG
GACGAGAAAGATGAACAGACGCTCCCTCCCTTTTATTCCTCCTATCCTAC
TTCCTCCTTTTCCGATGACAACAACGGGGACACGGAGGAAGAGGAAAATG
ATGACGATGATGACCCGTACTCTTTCAAAAACTTTGCCTTTGCTTGGCAA
AGTATCCAAGCGCGGGCATTTGGTCGGCGCTTGCCGTATTCTGCTTTGGT
CCCTTTCTGTGATGGGTTTAATCACGCTAATGTCGCGATCAAATATCGAC
TGGAGGCAGGGGGCAGCAATGCGGGGGCGGGTAGTAGTAATAAGGATACC
GCCACCAGTTGCATCTATGTTGGTGGTGTGCTGGAGCACGTAGAGGCGAA
GAAGCACCAACAAGAGCAGCAGCTGCGGCAAGGAAAAGAAGGCAAAGGAG
AGGGCGGGGCGAAGTCCCCTCAGCTTCCAACTCGTGCCTTTCACCTCTTC
CCCAGCGGCGAGAATCGCTACAAAAAGGTAGTTTATGAAGCCGAGGCCCT
GAGGGCGTTGCAAGCGCAGGTAGAAGAAGTGCTTTCTGCTTTTCCCACCT
CTTTGGAGGAGGACGAGGTGGCGCTGAAAGAGTGTACGACAGGAGAAGAG
GTAGGAGGAGAAGGAAGGAGGGAGGGAGGAAGTGTGAATGCGAACTGTCG
AATTGCAGCATTGACGTACCGATTGACTCGGAAACGGATTTTGAAGCACC
ATTTGGGGATGATCCAAAAGGAGATACGAGCCTTGGTGGAAGATGAGGAG
GACGACAGAAAGGGACTCGACAGAAGAAATAGCCAGAGTGGTAACAGAAG
AGAGATAATACGATTGACTGAAAGATTGGGATTGAATGATTCATGA

Synonyms

Publications