jgi.p|Nanoce1779_2|600032, mRNA_7788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600032
Unique NamemRNA_7788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1590
Alignment locationscaffold_21:332460..334049 +

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Properties
Property NameValue
TranscriptId600118
TrackFilteredModels2
ProteinId600032
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:332460..334049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600032gene_7788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600032mRNA_7788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7788CDS_7788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7788 ID=mRNA_7788|Name=jgi.p|Nanoce1779_2|600032|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
CAGAGGGATAGCCATATTCTGTTACGGGAAATCACTCTACTTCCGCGTCG
TCGGTGTCTTCGCCTGTGCCTGTAGCACCGGAGCAGAGGCGCCCATCACG
TTTTGAATTCTGCCGCCACATCCCACCACCGCCGCCGCCGTCTCCCCGGT
CATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGT
TCTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGC
AGGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCT
CTTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCT
CTTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAG
GTGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCG
TTTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCTGAAATAGCGGCGC
ATGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAG
GGGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCG
GAGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTG
ATATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGC
ACTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGA
TCTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGA
ATCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAG
CCTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCAT
TTGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAG
TGGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGG
CTGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGAT
TTCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGC
CCGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGT
GTGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTC
GTGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGT
TCACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATG
ATTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTA
TATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAA
AGAAGTAGGGAGGTAGCGAGGGCATGGGCCGGTGGAGGAGAGATAAAGTT
AATGGGAAGATGATTGTGTGTGTGTGCAGACTAGTGTGATTTTACTGTAC
GAGAGAGACAATCAAGTCAAACAAACACAAACAGGCAGTACTTTAAATAA
ACGCAAGAACCGCAGAAAGAAAAAAGTTCCACCTTTGACA
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protein sequence of jgi.p|Nanoce1779_2|600032

>mRNA_7788-protein ID=mRNA_7788-protein|Name=jgi.p|Nanoce1779_2|600032|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MGASIDEHKPMLNNFGFSGIGSAGAGHAHLRGGRGRSNTLTTWFSKRWLL
LLVGSIGAFYLLHWASSSPSPKIISTPIEMAPKVQKLRSAKSMVKDGKVR
LSDLIGAAIHLSEIAAHEITEVKLTGVETTKVKGQTDEGVDEPVTLADAR
SNSVFVNGLRQLFPGIDILSEETEPEVKEIRISTVNDVELEHDPWLDLKD
LLVTVDPLDATKEFTENLLHFVTTMVCVVHKGKPIAGIINEPFAKDEAAI
WGISLDEESAGRSINTVDELGQVSVESFNDLHGLQASLEGAEAAFEKVMI
SRSHTGPGANVVSEFLPGKKPEFAGGSGYKALSVIRGQADAYVHVTKIKS
WDVCAADALVHAAGGMFTNLKGERLVYVKDDPMISGGLVATGDVPAHGWY
MEKLAPVQMPPSDGHKKK*
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mRNA from alignment at scaffold_21:332460..334049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7788 ID=mRNA_7788|Name=jgi.p|Nanoce1779_2|600032|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at scaffold_21:332460..334049+ (Nannochloropsis oceanica)
CAGAGGGATAGCCATATTCTGTTACGGGAAATCACTCTACTTCCGCGTCG
TCGGTGTCTTCGCCTGTGCCTGTAGCACCGGAGCAGAGGCGCCCATCACG
TTTTGAATTCTGCCGCCACATCCCACCACCGCCGCCGCCGTCTCCCCGGT
CATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGT
TCTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGC
AGGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCT
CTTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCT
CTTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAG
GTGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCG
TTTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCTGAAATAGCGGCGC
ATGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAG
GGGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCG
GAGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTG
ATATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGC
ACTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGA
TCTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGA
ATCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAG
CCTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCAT
TTGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAG
TGGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGG
CTGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGAT
TTCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGC
CCGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGT
GTGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTC
GTGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGT
TCACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATG
ATTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTA
TATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAA
AGAAGTAGGGAGGTAGCGAGGGCATGGGCCGGTGGAGGAGAGATAAAGTT
AATGGGAAGATGATTGTGTGTGTGTGCAGACTAGTGTGATTTTACTGTAC
GAGAGAGACAATCAAGTCAAACAAACACAAACAGGCAGTACTTTAAATAA
ACGCAAGAACCGCAGAAAGAAAAAAGTTCCACCTTTGACA
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Coding sequence (CDS) from alignment at scaffold_21:332460..334049+

>mRNA_7788 ID=mRNA_7788|Name=jgi.p|Nanoce1779_2|600032|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_21:332460..334049+ (Nannochloropsis oceanica)
ATGGGTGCGTCCATCGACGAGCACAAACCCATGCTCAATAATTTCGGGTT
CTCGGGCATTGGGAGTGCGGGTGCTGGCCATGCACACTTGCGAGGCGGCA
GGGGTCGCTCCAATACTTTGACCACCTGGTTCTCGAAGCGGTGGCTCCTC
TTGCTGGTTGGTTCAATCGGCGCCTTCTACCTACTCCACTGGGCATCCTC
TTCTCCTTCACCCAAAATAATTTCGACGCCTATAGAGATGGCTCCCAAGG
TGCAGAAATTGCGGAGTGCCAAAAGCATGGTGAAGGATGGGAAGGTCCGT
TTGAGTGACTTGATAGGTGCAGCCATTCATTTGTCTGAAATAGCGGCGCA
TGAAATCACGGAAGTTAAGCTCACGGGCGTGGAAACCACGAAAGTCAAGG
GGCAGACAGACGAAGGGGTGGATGAGCCAGTCACCCTGGCGGATGCGCGG
AGTAACAGCGTGTTTGTCAACGGGCTGCGACAGCTTTTCCCGGGGATTGA
TATTTTGTCGGAGGAGACCGAGCCGGAAGTAAAGGAGATAAGGATCAGCA
CTGTTAATGACGTGGAGCTCGAGCATGATCCTTGGTTGGACTTGAAAGAT
CTGCTGGTTACTGTCGATCCTTTGGATGCCACCAAGGAGTTTACAGAGAA
TCTGCTTCATTTTGTCACTACAATGGTATGTGTCGTGCATAAAGGGAAGC
CTATAGCGGGCATTATCAACGAACCCTTCGCCAAAGACGAAGCGGCCATT
TGGGGGATTTCGCTTGATGAAGAATCGGCGGGGAGAAGCATCAATACAGT
GGATGAATTAGGCCAGGTTTCGGTGGAGAGCTTTAACGACTTACATGGGC
TGCAGGCCTCGCTGGAGGGCGCAGAAGCTGCTTTCGAGAAGGTAATGATT
TCTCGGTCGCACACGGGGCCAGGCGCAAATGTTGTGTCGGAGTTCTTGCC
CGGAAAGAAACCGGAATTTGCAGGTGGGAGTGGTTACAAGGCCTTGAGTG
TGATAAGGGGCCAGGCAGATGCCTATGTGCACGTGACAAAGATAAAGTCG
TGGGATGTGTGTGCGGCCGATGCACTGGTGCATGCTGCTGGCGGCATGTT
CACCAATCTGAAGGGGGAGCGGTTGGTGTATGTGAAAGACGACCCCATGA
TTTCCGGCGGGCTGGTCGCTACGGGGGATGTCCCGGCACATGGGTGGTAT
ATGGAGAAGCTGGCGCCGGTGCAGATGCCGCCTAGTGATGGGCATAAAAA
GAAGTAG
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Synonyms
Publications