jgi.p|Nanoce1779_2|168659, mRNA_7785 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|168659
Unique Name	mRNA_7785
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2176
Alignment location	scaffold_21:326412..328587 -

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Properties


Property Name	Value
TranscriptId	168745
Track	FilteredModels2
ProteinId	168659

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:326412..328587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|168659	gene_7785	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|168659	mRNA_7785-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7785	CDS_7785	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:326412..328587-
coding sequence from alignment at scaffold_21:326412..328587-

mRNA sequence

>mRNA_7785 ID=mRNA_7785|Name=jgi.p|Nanoce1779_2|168659|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
ATGGAGTGGACTCTACCTTGACCCTTCAAATAATGTGGTGGTTGACGTCC
CGCCCCCCCCCCGAAATTAATTAAGTGGTATAAGTGCGGAACGACAGAAT
CAGCTCCAGGAGCCCCAGCAGCGGCACCGTGTGACACTTGTTCCTTTGCC
AATCCCTTAACGCTATCCGCCCCGTACATACCACAGGCAAACGTAGACAT
GCCAGATCCTGGCCAAGACAAAGGCTTAACGCTACTACAATCAATCGTCA
CCCGGCTGCACGAACCTCCCTTCTCCCTGTCGTTCCCCGGAGGAGTCCAT
GACCTCGCCGCCGAGCCTCCCAACGCCCTCCTGCAGCTCCTGTACCACAT
CCTCTCGTATCTCGAGCCTTGCATGGCCCTAGATGTCAAGACCGCGTCGG
AAGACGAGCGTGTGGCACGCACGGTAGATTTTCTTAGCATGCTCAAGTGT
CCTTTCTTAATGCCTGCCACGGATGAAGAGGGGGAAGCAATGCTGGTCCA
GGGCCTGCTACTAGGTGATAAGGCTACCCTTTTTCCTGTTCTGGCATGGT
GCCTCAATAATCTCTCCCATCTCCACCGACGGGCGTACCTGGGGAGATAC
CTCATGCCCGTGGATGTCCCATTCGACCACTCACAAACACAAGACCCTAC
TCTTGCTGACTTGCACGCCAGGTTTCGCGGGCTCCAAGAGGAATTTACTT
CCGTGCACAAAGCGTTCGAAGAGGTACGAGCAGCCATAGGAACCACCAAC
TCATGCGAGATCCGCGCACAAATTAAGCAGCTTGAGGAGGAGAAACATCA
GTTGGAGGAGAACGTTGAACGGATGGCCAGGGTGGGTCAGAGAGAGGTAG
GGTTTAACGAGATGCTTTCTTTGACAAGAGCAGTGAGGGAGGAAGAGGAG
GATGAACGACGGTTGAGGGGTAAGTTGGCCGAGGAAAGGCATGCGTTCGA
GATAAGTGAGCGACGGGTGCAGGCGCTGGGATTAGCGTTGGAGGAAGAGG
GGAAGAGGAGAAGAGGGAGGAAGGGAGGGAGATCACGGACCCCGTTTGAC
ATTCAAGATCAAGCAACAGCTGAGATGTTGGTGGAGGAGCTTCAGGAAGA
GGTGAGACGTTTGCGGTACCAAGTGACGGAGCAACTCCCTTTGGAGATAG
AGAAAGCCCAGCTTTATTTTGGAAGGAAGGAAGGGATAGAAGGGAGGCAT
CAGCACCAGAACCAGCAGCGGCAGCAGCTCGAGAGGGTGGGGAGGGAGGA
CATGGAGAAGGTTGTTTACGATGTGAAGCGGGCAGAGCTTCATGTGCAAT
ATTGGAAGGCCAAAATAGACGAGAAGATTATAAAGAGTGGTGGTGCGATC
AATCCGAGCAGCAACAATGGAAAGAGAAAAGCTGAAGAAGGAAGGAGGGA
GAGAGGAAAGGAGAGGGGTAGCGATGACAAATTTTTGCACTTGAGGGAAC
GTGCGCTGGTGGCTGCGATTGCGGGGATGGAAAAGGAGGGGGAGTTAGAG
ATGCTGTTGCTTAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCTAGACCGGTTGTCTGTGGATAGACGTGTGCATGAGCAAGCAAAGGAGA
GACTAGAATCTCAAATAACGAGTAGAGAAGGGTATCCTTTGTACCAGGGG
GCAGGAGCGAAAGCGGCAGTGGCGGCAAGAGCTGAACGAGGAGTTGAAGT
AGTAGGGGTGACAAGAAGAAGCATGAAAGACGCAGAGGGTTGTGGTGCTG
ACGGTGATGGTGATGGTGATAGAGGGACACAGGATGAGTTAACCGAGGCA
TTGCGGAAAATTAATGAAGAACTCAGAGAAGAAAAACGTCGCCTACAACC
ACTGGTCAAGGTACTGAAGGAGGGACGGAAGGAGGCAGGGATCTTAGAGG
AAGAGCATCGCTTGCGTAAAGCTCAGTATGAGAGGGTGATGATGATGTCA
AGAAGGGAGGGAGTAAAGGAAGACAGGGAGGGAGAGAGGGAAATGCTAGC
GCTTAAGACGTTGCTGGAGGTGAAGTTGAGCGTGGAGGGAGACGGACGGG
GAAGGGCAGCGCGGCAACAACCGCAACAACAGTATTAGCATCAGGAAAGC
GATGCATGGTGTCCATTGCATCGCTAACGGTGATGGCAACCAAAACCAAG
GAACGTAAATAGAGATTTGAACGGTC

protein sequence of jgi.p|Nanoce1779_2|168659

>mRNA_7785-protein ID=mRNA_7785-protein|Name=jgi.p|Nanoce1779_2|168659|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MPDPGQDKGLTLLQSIVTRLHEPPFSLSFPGGVHDLAAEPPNALLQLLYH
ILSYLEPCMALDVKTASEDERVARTVDFLSMLKCPFLMPATDEEGEAMLV
QGLLLGDKATLFPVLAWCLNNLSHLHRRAYLGRYLMPVDVPFDHSQTQDP
TLADLHARFRGLQEEFTSVHKAFEEVRAAIGTTNSCEIRAQIKQLEEEKH
QLEENVERMARVGQREVGFNEMLSLTRAVREEEEDERRLRGKLAEERHAF
EISERRVQALGLALEEEGKRRRGRKGGRSRTPFDIQDQATAEMLVEELQE
EVRRLRYQVTEQLPLEIEKAQLYFGRKEGIEGRHQHQNQQRQQLERVGRE
DMEKVVYDVKRAELHVQYWKAKIDEKIIKSGGAINPSSNNGKRKAEEGRR
ERGKERGSDDKFLHLRERALVAAIAGMEKEGELEMLLLRQQQQQQQQQQQ
QLDRLSVDRRVHEQAKERLESQITSREGYPLYQGAGAKAAVAARAERGVE
VVGVTRRSMKDAEGCGADGDGDGDRGTQDELTEALRKINEELREEKRRLQ
PLVKVLKEGRKEAGILEEEHRLRKAQYERVMMMSRREGVKEDREGEREML
ALKTLLEVKLSVEGDGRGRAARQQPQQQY*

mRNA from alignment at scaffold_21:326412..328587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7785 ID=mRNA_7785|Name=jgi.p|Nanoce1779_2|168659|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp|location=Sequence derived from alignment at scaffold_21:326412..328587- (Nannochloropsis oceanica)
ATGGAGTGGACTCTACCTTGACCCTTCAAATAATGTGGTGGTTGACGTCC
CGCCCCCCCCCCGAAATTAATTAAGTGGTATAAGTGCGGAACGACAGAAT
CAGCTCCAGGAGCCCCAGCAGCGGCACCGTGTGACACTTGTTCCTTTGCC
AATCCCTTAACGCTATCCGCCCCGTACATACCACAGGCAAACGTAGACAT
GCCAGATCCTGGCCAAGACAAAGGCTTAACGCTACTACAATCAATCGTCA
CCCGGCTGCACGAACCTCCCTTCTCCCTGTCGTTCCCCGGAGGAGTCCAT
GACCTCGCCGCCGAGCCTCCCAACGCCCTCCTGCAGCTCCTGTACCACAT
CCTCTCGTATCTCGAGCCTTGCATGGCCCTAGATGTCAAGACCGCGTCGG
AAGACGAGCGTGTGGCACGCACGGTAGATTTTCTTAGCATGCTCAAGTGT
CCTTTCTTAATGCCTGCCACGGATGAAGAGGGGGAAGCAATGCTGGTCCA
GGGCCTGCTACTAGGTGATAAGGCTACCCTTTTTCCTGTTCTGGCATGGT
GCCTCAATAATCTCTCCCATCTCCACCGACGGGCGTACCTGGGGAGATAC
CTCATGCCCGTGGATGTCCCATTCGACCACTCACAAACACAAGACCCTAC
TCTTGCTGACTTGCACGCCAGGTTTCGCGGGCTCCAAGAGGAATTTACTT
CCGTGCACAAAGCGTTCGAAGAGGTACGAGCAGCCATAGGAACCACCAAC
TCATGCGAGATCCGCGCACAAATTAAGCAGCTTGAGGAGGAGAAACATCA
GTTGGAGGAGAACGTTGAACGGATGGCCAGGGTGGGTCAGAGAGAGGTAG
GGTTTAACGAGATGCTTTCTTTGACAAGAGCAGTGAGGGAGGAAGAGGAG
GATGAACGACGGTTGAGGGGTAAGTTGGCCGAGGAAAGGCATGCGTTCGA
GATAAGTGAGCGACGGGTGCAGGCGCTGGGATTAGCGTTGGAGGAAGAGG
GGAAGAGGAGAAGAGGGAGGAAGGGAGGGAGATCACGGACCCCGTTTGAC
ATTCAAGATCAAGCAACAGCTGAGATGTTGGTGGAGGAGCTTCAGGAAGA
GGTGAGACGTTTGCGGTACCAAGTGACGGAGCAACTCCCTTTGGAGATAG
AGAAAGCCCAGCTTTATTTTGGAAGGAAGGAAGGGATAGAAGGGAGGCAT
CAGCACCAGAACCAGCAGCGGCAGCAGCTCGAGAGGGTGGGGAGGGAGGA
CATGGAGAAGGTTGTTTACGATGTGAAGCGGGCAGAGCTTCATGTGCAAT
ATTGGAAGGCCAAAATAGACGAGAAGATTATAAAGAGTGGTGGTGCGATC
AATCCGAGCAGCAACAATGGAAAGAGAAAAGCTGAAGAAGGAAGGAGGGA
GAGAGGAAAGGAGAGGGGTAGCGATGACAAATTTTTGCACTTGAGGGAAC
GTGCGCTGGTGGCTGCGATTGCGGGGATGGAAAAGGAGGGGGAGTTAGAG
ATGCTGTTGCTTAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCTAGACCGGTTGTCTGTGGATAGACGTGTGCATGAGCAAGCAAAGGAGA
GACTAGAATCTCAAATAACGAGTAGAGAAGGGTATCCTTTGTACCAGGGG
GCAGGAGCGAAAGCGGCAGTGGCGGCAAGAGCTGAACGAGGAGTTGAAGT
AGTAGGGGTGACAAGAAGAAGCATGAAAGACGCAGAGGGTTGTGGTGCTG
ACGGTGATGGTGATGGTGATAGAGGGACACAGGATGAGTTAACCGAGGCA
TTGCGGAAAATTAATGAAGAACTCAGAGAAGAAAAACGTCGCCTACAACC
ACTGGTCAAGGTACTGAAGGAGGGACGGAAGGAGGCAGGGATCTTAGAGG
AAGAGCATCGCTTGCGTAAAGCTCAGTATGAGAGGGTGATGATGATGTCA
AGAAGGGAGGGAGTAAAGGAAGACAGGGAGGGAGAGAGGGAAATGCTAGC
GCTTAAGACGTTGCTGGAGGTGAAGTTGAGCGTGGAGGGAGACGGACGGG
GAAGGGCAGCGCGGCAACAACCGCAACAACAGTATTAGCATCAGGAAAGC
GATGCATGGTGTCCATTGCATCGCTAACGGTGATGGCAACCAAAACCAAG
GAACGTAAATAGAGATTTGAACGGTC

Coding sequence (CDS) from alignment at scaffold_21:326412..328587-

>mRNA_7785 ID=mRNA_7785|Name=jgi.p|Nanoce1779_2|168659|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_21:326412..328587- (Nannochloropsis oceanica)
ATGCCAGATCCTGGCCAAGACAAAGGCTTAACGCTACTACAATCAATCGT
CACCCGGCTGCACGAACCTCCCTTCTCCCTGTCGTTCCCCGGAGGAGTCC
ATGACCTCGCCGCCGAGCCTCCCAACGCCCTCCTGCAGCTCCTGTACCAC
ATCCTCTCGTATCTCGAGCCTTGCATGGCCCTAGATGTCAAGACCGCGTC
GGAAGACGAGCGTGTGGCACGCACGGTAGATTTTCTTAGCATGCTCAAGT
GTCCTTTCTTAATGCCTGCCACGGATGAAGAGGGGGAAGCAATGCTGGTC
CAGGGCCTGCTACTAGGTGATAAGGCTACCCTTTTTCCTGTTCTGGCATG
GTGCCTCAATAATCTCTCCCATCTCCACCGACGGGCGTACCTGGGGAGAT
ACCTCATGCCCGTGGATGTCCCATTCGACCACTCACAAACACAAGACCCT
ACTCTTGCTGACTTGCACGCCAGGTTTCGCGGGCTCCAAGAGGAATTTAC
TTCCGTGCACAAAGCGTTCGAAGAGGTACGAGCAGCCATAGGAACCACCA
ACTCATGCGAGATCCGCGCACAAATTAAGCAGCTTGAGGAGGAGAAACAT
CAGTTGGAGGAGAACGTTGAACGGATGGCCAGGGTGGGTCAGAGAGAGGT
AGGGTTTAACGAGATGCTTTCTTTGACAAGAGCAGTGAGGGAGGAAGAGG
AGGATGAACGACGGTTGAGGGGTAAGTTGGCCGAGGAAAGGCATGCGTTC
GAGATAAGTGAGCGACGGGTGCAGGCGCTGGGATTAGCGTTGGAGGAAGA
GGGGAAGAGGAGAAGAGGGAGGAAGGGAGGGAGATCACGGACCCCGTTTG
ACATTCAAGATCAAGCAACAGCTGAGATGTTGGTGGAGGAGCTTCAGGAA
GAGGTGAGACGTTTGCGGTACCAAGTGACGGAGCAACTCCCTTTGGAGAT
AGAGAAAGCCCAGCTTTATTTTGGAAGGAAGGAAGGGATAGAAGGGAGGC
ATCAGCACCAGAACCAGCAGCGGCAGCAGCTCGAGAGGGTGGGGAGGGAG
GACATGGAGAAGGTTGTTTACGATGTGAAGCGGGCAGAGCTTCATGTGCA
ATATTGGAAGGCCAAAATAGACGAGAAGATTATAAAGAGTGGTGGTGCGA
TCAATCCGAGCAGCAACAATGGAAAGAGAAAAGCTGAAGAAGGAAGGAGG
GAGAGAGGAAAGGAGAGGGGTAGCGATGACAAATTTTTGCACTTGAGGGA
ACGTGCGCTGGTGGCTGCGATTGCGGGGATGGAAAAGGAGGGGGAGTTAG
AGATGCTGTTGCTTAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCTAGACCGGTTGTCTGTGGATAGACGTGTGCATGAGCAAGCAAAGGA
GAGACTAGAATCTCAAATAACGAGTAGAGAAGGGTATCCTTTGTACCAGG
GGGCAGGAGCGAAAGCGGCAGTGGCGGCAAGAGCTGAACGAGGAGTTGAA
GTAGTAGGGGTGACAAGAAGAAGCATGAAAGACGCAGAGGGTTGTGGTGC
TGACGGTGATGGTGATGGTGATAGAGGGACACAGGATGAGTTAACCGAGG
CATTGCGGAAAATTAATGAAGAACTCAGAGAAGAAAAACGTCGCCTACAA
CCACTGGTCAAGGTACTGAAGGAGGGACGGAAGGAGGCAGGGATCTTAGA
GGAAGAGCATCGCTTGCGTAAAGCTCAGTATGAGAGGGTGATGATGATGT
CAAGAAGGGAGGGAGTAAAGGAAGACAGGGAGGGAGAGAGGGAAATGCTA
GCGCTTAAGACGTTGCTGGAGGTGAAGTTGAGCGTGGAGGGAGACGGACG
GGGAAGGGCAGCGCGGCAACAACCGCAACAACAGTATTAG

Synonyms

Publications