jgi.p|Nanoce1779_2|673002, mRNA_7783 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673002
Unique Name	mRNA_7783
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3352
Alignment location	scaffold_21:319703..323054 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673088
Track	FilteredModels2
ProteinId	673002

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:319703..323054 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673002	gene_7783	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673002	mRNA_7783-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7783	CDS_7783	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:319703..323054-
coding sequence from alignment at scaffold_21:319703..323054-

mRNA sequence

>mRNA_7783 ID=mRNA_7783|Name=jgi.p|Nanoce1779_2|673002|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp
AAGCCACGGCTGCAACCCTCCTCCCGGCGTCAATTTACTTTGGACGTGCC
GCGTACGTTGCGCTGTATAGATAGATCTAGGATCAGATGGTGATGGGGAC
CCGGTCGCTGGTTTTGAGGCGCGACTAAAAGCGCGGACGAATTCCTGCAT
GAGGGTGTCACTCCTCTTCTGAGCCTTAATTCATGCGCTCACATAAATGC
GGCTTGTAATCACCAGCATGAGCATGGAGACAAGAGCGCTCATCAGGAGA
AGGGCGATGAAATGGAGGAGAAGAATTGCATATCGCAGAGCTGGCATTTA
AAAGTGCAACTGCTTGCATAGCGTGCAGCACACGTACATTCTCATCAACA
CACTTTCTCACCTTTCTAACACACCACACACACTCACATGCCACACGCTA
GTTGCGCGCGAAAAGAGCAGCCTTGTCCGCCCACACAAGCCCCGCGGGTG
GTCTTTTCCTTCCCTCCCTCCGTCTTTCTGGCCCCAGCCTCTCTCCTCCC
CTTTTTTGCACATCTCAGCTCAGTAACAGCATCAACAGTCGGCCTATCCT
TTCTCCCCTCCTTATCACCATGGCGGCGACCAGCAAAAAATTTGTCATCA
AGCCCTACAAACAACATACACAAATGGATCGTGCGAAAGCCACCAGCGTT
TGGGCCGAGCTTTCCGGGGCCATTGACGAGATCTTCAAAAAGAATGCCAG
CAACCTCTCCTTCGAGCATCTCTATCGCAATGCTTATAACCTCGTCCTTC
ATAAACACGCGGAATTACTCTATCAAGGCGTGAAATCTTCCGTGCAGGCC
TACCTGACCTCAGTCAGCACTGCCATTGCCACTACCCCAGACGAGAGGCT
TTTGGAGGAGGTGGCGGACCGATGGGGCGACCACCGAGTGACCATGAACA
TGGTGAGAGATATTTTGATGTACATGGACAGGACGTACGTGCCTCAGCAT
AACAAGATTAAGGTATATGATTTGGGGTTGCAGAATTTCAGAAACTCGAT
TGCGAGGCATCCGTTGGTAAAGGATCGCTTGCAGATGTTGCTACTCGCGA
ATATCAAGGCAGAACGGGAGGGACAGTTGGTGGATAGGAGTTTGTTGAGA
GGGACATTATCGATGCTGGTTGATCTGGGCATCCAGGGGACACGAGTCTA
CGAAGAGGACTTTGAGAGGGCGTTCTTGGAAACGACGCGGGCTTTCTACC
GCGCCGAAAGCCAGGATGTGATTAGTAAGAATACGTGCCCGGTGTACATG
ATGAAGGCGGAGGATCGGCTGCTGGAGGAGCAGGGAAGGGTGATGAATTA
TCTCGATCGGAGCACGGAGGGGAAGCTGAGGGTCATCGTTGAGGAGGAGC
TGGTGAAAGCGCATGCGACCACTTTGGTGGAGATGGAGGGGTCGGGGTGC
AAGGCCATGTTTCGTGACAACAAAGTAGAGGACTTGAAGAGGATGTATGA
GTTGTTTGTGCGGGTACCGGCGACGTTGGAGGAGCTGAGGGGTGCGATGA
GTGAATATGTGAAGGCGGCCGGGAGGGCGTTGGTGGCGGACCAGGAGAGG
GAGCGGGATCCGGTGGTTTTTGTGAAGAGTCTTCTGGAGATGAGGGATAA
GTTTGATAGAATAGTCCATGAGAGTTTTGGGGGGGAGAAAGTGGCGCAGA
AGAAGTTGCAGGAGGCGTTCGAAGACTTCATTAACATGGATACGCGATGC
GCCATGTTTTTGGCGTTGTATGTGGATGATCTGCTCAAGTGCGGGTTGAA
GGGCATGGGGGAGGAGGAGGCGGATGTGGCCTTAAACAAATTTATTGTGA
TTTTCAAGTATTTGCAAGATAAGGACGTGTTTGAGAATTATTACAAGACA
CACTTGTCCAAGAGGTTGTTGGGCGGGAGGAGTGTCAATGATGACTTTGA
AAGGCAGATGATCACCAAGCTGAAAACAGAGTGCGGGTACCATTTCACGA
GTAAGCTTGAGGGGATGTTCAATGACATGAGGCTCTCCAAGGACGCGATG
GACGAATTCCGGAGGGCCGGGGTAAATCGAATCAATGGCGTTGAGCTTGA
AGTTTCGATGCTCACCCAGGGGTACTGGCCATCGCAAGGCCCGACGACCT
GTATCCTCCCCCCGGAGATCCAGGCCTGCTGTACGGTTTTTCAGACCTTC
TACCACCAGAAGCACAACGGGCGGAAGGTAAGCTGGCAGGGTAGCATGGG
TAACGCCGATATCCGCGCCACATTTTCCGGGGGCCGAAAGCATGACTTGC
AGGTGCACACGTACTCGATGTGTATTTTGATGCTGTTCAACGAGCGAGAT
TCGTTGTCCTACGACGAGATCCACAAGGCAACTCAGATCCCTGAGAATGA
ATTGAGACGGAATCTGATCTCGATCAGCACGAACAAGCACCGGATCCTGC
GGAAGACCACCAAGGGAAAGGGAGTAAGTGACGATGCTACATTTACGTTC
AATCCCGAATTTACAAGTAAATTGAGGAGGATTAAGGTACCCATGGTGTC
AATGAAAGAGGCCTTGCCGGAGGGACAGGGAGGGGGGGAGGGAAGGGAAG
GTGGGGAGGGCGGGGGATTGGTAGATGGGATCCCGGCGGCGGTGGAGGAG
GATAGGAGACATTTGGTGGAGGCGGCGGTGGTGAGGATTATGAAGGCTAG
GAGAACGTTGGGGCATAATGAATTGATAGCGGAGGTGACGAAGCAGCTAT
CGGTGCGGTTCTTGGCGAGCCCGAATTTCATTAAGAAGCGGATTGAGTGT
CTGATTGACAGGGAGTATTTGGAGAGGGGGCCAAATGATCGTCGGACCTA
TAACTACCTCGCTTAGGTCTCGATTGGCGAATAAGAGAGGGAGGGAGGTT
TTGAGTTGGATGAGGGGAGGGACGTAAGGGTGTGCGACTCTACCTTTAGA
AGACTGTGGCGAGGATGAGTCGGTCGGGGCTGTGACTTATGTCTTTGTCT
CCCAGGGCTTTACCCTGGTCACTACCATAATCCAAATTGCAGTGACACTT
TGATAAAGAGTCACAACAACCCTTGTTGGTCGAAAGACACAAGTACCTAG
TACCCGGGGTGGTAGTAGGCTATCCTTCTTTTCAGGACAAACAGAAAATA
TAGACCGTGCGAATGGGAAAATAGTTAGGTAGATAGGCAGAGAGGGGTAG
AGGGAAGCAAGCAAATTAGAGTGGGGCGAGAGAAAGGTTCATAGCACAGC
AGAAAAGCGGAGTTCCGAGAATTGCATGTGTGTTCACGGAGTACAAAGAG
CTTGAATAGAAGTAGTTTGAAACGAGGAATATCGATATAAAATTGGAGAA
CAACAGATTAGTCCCAAGCCAAAAGAAGCAAAGCGATTGTACAGCAATAC
AT

protein sequence of jgi.p|Nanoce1779_2|673002

>mRNA_7783-protein ID=mRNA_7783-protein|Name=jgi.p|Nanoce1779_2|673002|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MAATSKKFVIKPYKQHTQMDRAKATSVWAELSGAIDEIFKKNASNLSFEH
LYRNAYNLVLHKHAELLYQGVKSSVQAYLTSVSTAIATTPDERLLEEVAD
RWGDHRVTMNMVRDILMYMDRTYVPQHNKIKVYDLGLQNFRNSIARHPLV
KDRLQMLLLANIKAEREGQLVDRSLLRGTLSMLVDLGIQGTRVYEEDFER
AFLETTRAFYRAESQDVISKNTCPVYMMKAEDRLLEEQGRVMNYLDRSTE
GKLRVIVEEELVKAHATTLVEMEGSGCKAMFRDNKVEDLKRMYELFVRVP
ATLEELRGAMSEYVKAAGRALVADQERERDPVVFVKSLLEMRDKFDRIVH
ESFGGEKVAQKKLQEAFEDFINMDTRCAMFLALYVDDLLKCGLKGMGEEE
ADVALNKFIVIFKYLQDKDVFENYYKTHLSKRLLGGRSVNDDFERQMITK
LKTECGYHFTSKLEGMFNDMRLSKDAMDEFRRAGVNRINGVELEVSMLTQ
GYWPSQGPTTCILPPEIQACCTVFQTFYHQKHNGRKVSWQGSMGNADIRA
TFSGGRKHDLQVHTYSMCILMLFNERDSLSYDEIHKATQIPENELRRNLI
SISTNKHRILRKTTKGKGVSDDATFTFNPEFTSKLRRIKVPMVSMKEALP
EGQGGGEGREGGEGGGLVDGIPAAVEEDRRHLVEAAVVRIMKARRTLGHN
ELIAEVTKQLSVRFLASPNFIKKRIECLIDREYLERGPNDRRTYNYLA*

mRNA from alignment at scaffold_21:319703..323054-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7783 ID=mRNA_7783|Name=jgi.p|Nanoce1779_2|673002|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp|location=Sequence derived from alignment at scaffold_21:319703..323054- (Nannochloropsis oceanica)
AAGCCACGGCTGCAACCCTCCTCCCGGCGTCAATTTACTTTGGACGTGCC
GCGTACGTTGCGCTGTATAGATAGATCTAGGATCAGATGGTGATGGGGAC
CCGGTCGCTGGTTTTGAGGCGCGACTAAAAGCGCGGACGAATTCCTGCAT
GAGGGTGTCACTCCTCTTCTGAGCCTTAATTCATGCGCTCACATAAATGC
GGCTTGTAATCACCAGCATGAGCATGGAGACAAGAGCGCTCATCAGGAGA
AGGGCGATGAAATGGAGGAGAAGAATTGCATATCGCAGAGCTGGCATTTA
AAAGTGCAACTGCTTGCATAGCGTGCAGCACACGTACATTCTCATCAACA
CACTTTCTCACCTTTCTAACACACCACACACACTCACATGCCACACGCTA
GTTGCGCGCGAAAAGAGCAGCCTTGTCCGCCCACACAAGCCCCGCGGGTG
GTCTTTTCCTTCCCTCCCTCCGTCTTTCTGGCCCCAGCCTCTCTCCTCCC
CTTTTTTGCACATCTCAGCTCAGTAACAGCATCAACAGTCGGCCTATCCT
TTCTCCCCTCCTTATCACCATGGCGGCGACCAGCAAAAAATTTGTCATCA
AGCCCTACAAACAACATACACAAATGGATCGTGCGAAAGCCACCAGCGTT
TGGGCCGAGCTTTCCGGGGCCATTGACGAGATCTTCAAAAAGAATGCCAG
CAACCTCTCCTTCGAGCATCTCTATCGCAATGCTTATAACCTCGTCCTTC
ATAAACACGCGGAATTACTCTATCAAGGCGTGAAATCTTCCGTGCAGGCC
TACCTGACCTCAGTCAGCACTGCCATTGCCACTACCCCAGACGAGAGGCT
TTTGGAGGAGGTGGCGGACCGATGGGGCGACCACCGAGTGACCATGAACA
TGGTGAGAGATATTTTGATGTACATGGACAGGACGTACGTGCCTCAGCAT
AACAAGATTAAGGTATATGATTTGGGGTTGCAGAATTTCAGAAACTCGAT
TGCGAGGCATCCGTTGGTAAAGGATCGCTTGCAGATGTTGCTACTCGCGA
ATATCAAGGCAGAACGGGAGGGACAGTTGGTGGATAGGAGTTTGTTGAGA
GGGACATTATCGATGCTGGTTGATCTGGGCATCCAGGGGACACGAGTCTA
CGAAGAGGACTTTGAGAGGGCGTTCTTGGAAACGACGCGGGCTTTCTACC
GCGCCGAAAGCCAGGATGTGATTAGTAAGAATACGTGCCCGGTGTACATG
ATGAAGGCGGAGGATCGGCTGCTGGAGGAGCAGGGAAGGGTGATGAATTA
TCTCGATCGGAGCACGGAGGGGAAGCTGAGGGTCATCGTTGAGGAGGAGC
TGGTGAAAGCGCATGCGACCACTTTGGTGGAGATGGAGGGGTCGGGGTGC
AAGGCCATGTTTCGTGACAACAAAGTAGAGGACTTGAAGAGGATGTATGA
GTTGTTTGTGCGGGTACCGGCGACGTTGGAGGAGCTGAGGGGTGCGATGA
GTGAATATGTGAAGGCGGCCGGGAGGGCGTTGGTGGCGGACCAGGAGAGG
GAGCGGGATCCGGTGGTTTTTGTGAAGAGTCTTCTGGAGATGAGGGATAA
GTTTGATAGAATAGTCCATGAGAGTTTTGGGGGGGAGAAAGTGGCGCAGA
AGAAGTTGCAGGAGGCGTTCGAAGACTTCATTAACATGGATACGCGATGC
GCCATGTTTTTGGCGTTGTATGTGGATGATCTGCTCAAGTGCGGGTTGAA
GGGCATGGGGGAGGAGGAGGCGGATGTGGCCTTAAACAAATTTATTGTGA
TTTTCAAGTATTTGCAAGATAAGGACGTGTTTGAGAATTATTACAAGACA
CACTTGTCCAAGAGGTTGTTGGGCGGGAGGAGTGTCAATGATGACTTTGA
AAGGCAGATGATCACCAAGCTGAAAACAGAGTGCGGGTACCATTTCACGA
GTAAGCTTGAGGGGATGTTCAATGACATGAGGCTCTCCAAGGACGCGATG
GACGAATTCCGGAGGGCCGGGGTAAATCGAATCAATGGCGTTGAGCTTGA
AGTTTCGATGCTCACCCAGGGGTACTGGCCATCGCAAGGCCCGACGACCT
GTATCCTCCCCCCGGAGATCCAGGCCTGCTGTACGGTTTTTCAGACCTTC
TACCACCAGAAGCACAACGGGCGGAAGGTAAGCTGGCAGGGTAGCATGGG
TAACGCCGATATCCGCGCCACATTTTCCGGGGGCCGAAAGCATGACTTGC
AGGTGCACACGTACTCGATGTGTATTTTGATGCTGTTCAACGAGCGAGAT
TCGTTGTCCTACGACGAGATCCACAAGGCAACTCAGATCCCTGAGAATGA
ATTGAGACGGAATCTGATCTCGATCAGCACGAACAAGCACCGGATCCTGC
GGAAGACCACCAAGGGAAAGGGAGTAAGTGACGATGCTACATTTACGTTC
AATCCCGAATTTACAAGTAAATTGAGGAGGATTAAGGTACCCATGGTGTC
AATGAAAGAGGCCTTGCCGGAGGGACAGGGAGGGGGGGAGGGAAGGGAAG
GTGGGGAGGGCGGGGGATTGGTAGATGGGATCCCGGCGGCGGTGGAGGAG
GATAGGAGACATTTGGTGGAGGCGGCGGTGGTGAGGATTATGAAGGCTAG
GAGAACGTTGGGGCATAATGAATTGATAGCGGAGGTGACGAAGCAGCTAT
CGGTGCGGTTCTTGGCGAGCCCGAATTTCATTAAGAAGCGGATTGAGTGT
CTGATTGACAGGGAGTATTTGGAGAGGGGGCCAAATGATCGTCGGACCTA
TAACTACCTCGCTTAGGTCTCGATTGGCGAATAAGAGAGGGAGGGAGGTT
TTGAGTTGGATGAGGGGAGGGACGTAAGGGTGTGCGACTCTACCTTTAGA
AGACTGTGGCGAGGATGAGTCGGTCGGGGCTGTGACTTATGTCTTTGTCT
CCCAGGGCTTTACCCTGGTCACTACCATAATCCAAATTGCAGTGACACTT
TGATAAAGAGTCACAACAACCCTTGTTGGTCGAAAGACACAAGTACCTAG
TACCCGGGGTGGTAGTAGGCTATCCTTCTTTTCAGGACAAACAGAAAATA
TAGACCGTGCGAATGGGAAAATAGTTAGGTAGATAGGCAGAGAGGGGTAG
AGGGAAGCAAGCAAATTAGAGTGGGGCGAGAGAAAGGTTCATAGCACAGC
AGAAAAGCGGAGTTCCGAGAATTGCATGTGTGTTCACGGAGTACAAAGAG
CTTGAATAGAAGTAGTTTGAAACGAGGAATATCGATATAAAATTGGAGAA
CAACAGATTAGTCCCAAGCCAAAAGAAGCAAAGCGATTGTACAGCAATAC
AT

Coding sequence (CDS) from alignment at scaffold_21:319703..323054-

>mRNA_7783 ID=mRNA_7783|Name=jgi.p|Nanoce1779_2|673002|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at scaffold_21:319703..323054- (Nannochloropsis oceanica)
ATGGCGGCGACCAGCAAAAAATTTGTCATCAAGCCCTACAAACAACATAC
ACAAATGGATCGTGCGAAAGCCACCAGCGTTTGGGCCGAGCTTTCCGGGG
CCATTGACGAGATCTTCAAAAAGAATGCCAGCAACCTCTCCTTCGAGCAT
CTCTATCGCAATGCTTATAACCTCGTCCTTCATAAACACGCGGAATTACT
CTATCAAGGCGTGAAATCTTCCGTGCAGGCCTACCTGACCTCAGTCAGCA
CTGCCATTGCCACTACCCCAGACGAGAGGCTTTTGGAGGAGGTGGCGGAC
CGATGGGGCGACCACCGAGTGACCATGAACATGGTGAGAGATATTTTGAT
GTACATGGACAGGACGTACGTGCCTCAGCATAACAAGATTAAGGTATATG
ATTTGGGGTTGCAGAATTTCAGAAACTCGATTGCGAGGCATCCGTTGGTA
AAGGATCGCTTGCAGATGTTGCTACTCGCGAATATCAAGGCAGAACGGGA
GGGACAGTTGGTGGATAGGAGTTTGTTGAGAGGGACATTATCGATGCTGG
TTGATCTGGGCATCCAGGGGACACGAGTCTACGAAGAGGACTTTGAGAGG
GCGTTCTTGGAAACGACGCGGGCTTTCTACCGCGCCGAAAGCCAGGATGT
GATTAGTAAGAATACGTGCCCGGTGTACATGATGAAGGCGGAGGATCGGC
TGCTGGAGGAGCAGGGAAGGGTGATGAATTATCTCGATCGGAGCACGGAG
GGGAAGCTGAGGGTCATCGTTGAGGAGGAGCTGGTGAAAGCGCATGCGAC
CACTTTGGTGGAGATGGAGGGGTCGGGGTGCAAGGCCATGTTTCGTGACA
ACAAAGTAGAGGACTTGAAGAGGATGTATGAGTTGTTTGTGCGGGTACCG
GCGACGTTGGAGGAGCTGAGGGGTGCGATGAGTGAATATGTGAAGGCGGC
CGGGAGGGCGTTGGTGGCGGACCAGGAGAGGGAGCGGGATCCGGTGGTTT
TTGTGAAGAGTCTTCTGGAGATGAGGGATAAGTTTGATAGAATAGTCCAT
GAGAGTTTTGGGGGGGAGAAAGTGGCGCAGAAGAAGTTGCAGGAGGCGTT
CGAAGACTTCATTAACATGGATACGCGATGCGCCATGTTTTTGGCGTTGT
ATGTGGATGATCTGCTCAAGTGCGGGTTGAAGGGCATGGGGGAGGAGGAG
GCGGATGTGGCCTTAAACAAATTTATTGTGATTTTCAAGTATTTGCAAGA
TAAGGACGTGTTTGAGAATTATTACAAGACACACTTGTCCAAGAGGTTGT
TGGGCGGGAGGAGTGTCAATGATGACTTTGAAAGGCAGATGATCACCAAG
CTGAAAACAGAGTGCGGGTACCATTTCACGAGTAAGCTTGAGGGGATGTT
CAATGACATGAGGCTCTCCAAGGACGCGATGGACGAATTCCGGAGGGCCG
GGGTAAATCGAATCAATGGCGTTGAGCTTGAAGTTTCGATGCTCACCCAG
GGGTACTGGCCATCGCAAGGCCCGACGACCTGTATCCTCCCCCCGGAGAT
CCAGGCCTGCTGTACGGTTTTTCAGACCTTCTACCACCAGAAGCACAACG
GGCGGAAGGTAAGCTGGCAGGGTAGCATGGGTAACGCCGATATCCGCGCC
ACATTTTCCGGGGGCCGAAAGCATGACTTGCAGGTGCACACGTACTCGAT
GTGTATTTTGATGCTGTTCAACGAGCGAGATTCGTTGTCCTACGACGAGA
TCCACAAGGCAACTCAGATCCCTGAGAATGAATTGAGACGGAATCTGATC
TCGATCAGCACGAACAAGCACCGGATCCTGCGGAAGACCACCAAGGGAAA
GGGAGTAAGTGACGATGCTACATTTACGTTCAATCCCGAATTTACAAGTA
AATTGAGGAGGATTAAGGTACCCATGGTGTCAATGAAAGAGGCCTTGCCG
GAGGGACAGGGAGGGGGGGAGGGAAGGGAAGGTGGGGAGGGCGGGGGATT
GGTAGATGGGATCCCGGCGGCGGTGGAGGAGGATAGGAGACATTTGGTGG
AGGCGGCGGTGGTGAGGATTATGAAGGCTAGGAGAACGTTGGGGCATAAT
GAATTGATAGCGGAGGTGACGAAGCAGCTATCGGTGCGGTTCTTGGCGAG
CCCGAATTTCATTAAGAAGCGGATTGAGTGTCTGATTGACAGGGAGTATT
TGGAGAGGGGGCCAAATGATCGTCGGACCTATAACTACCTCGCTTAG

Synonyms

Publications