jgi.p|Nanoce1779_2|600008, mRNA_7782 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600008
Unique NamemRNA_7782
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1273
Alignment locationscaffold_21:317210..318722 +

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Properties
Property NameValue
TranscriptId600094
TrackFilteredModels2
ProteinId600008
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:317210..318722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600008gene_7782Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600008mRNA_7782-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7782CDS_7782Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7782 ID=mRNA_7782|Name=jgi.p|Nanoce1779_2|600008|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp
ACAGGCCACGCCGAGGGTTTGTCTCTGTTTTTGTCTAGGGCGTTTAGGAG
GGCTGGCCACGACGGCGTGCGCCGCTCAAAGAGGACGCCAGGCTGACCCA
AGTTGGGAGGTGAAGTCCCGCGGCAGGTCACAAAGTGCATTTGGGGGACC
ACGCGTGACAACCACCGATGCCAAAGCACACGACAACGATTCGGCAGCAT
GAGCCGACGCGGCATGTCGATTCGGTCCCGAACGCTTTGTCGCTTTCTGG
TAAGTGCCTCGATGTCGCCTCATGAAACCATCGTTTGAATGCGAAAGCCG
AGAGCGCGGCAATCAAATCCAAAACATCGCTGCTCCCCATCCACTGCGGT
TCCATTCAAGCACAAGCTACCTTTTTGTCATCCTTCTTCCATGCTAGGCC
CATATCGATCCCTGTTGCGAAATCAAGATGTGATGTGTCAGCAGTTGGTG
TCTTTGTCCTCCAACGCCCGCGCACCCATTCTTTCATCTCCCGCCTCACA
TACATACACTCATCCGTTGTCTCCATTCCTTTCTCCATATAAATGCACAT
TGAATTCAGATCCATATGGCACCCGAGCCATCATCCCCGTGGTGAGGGGC
CGACCGCGCTTCCCACGTAGGCTGGCCTTACAGTTCGCAATGGACGAGGG
AGACGAGGACAAGGAAGAGGAGGACAACGGCAGTTACGACAGCGCCGAGG
AACGAGACCGGGAGGAGGAGGAGCAAGAGGATGAGAAAGTGGGCGCGGGC
CTGGATGTCATGAGGTCAAGATGTGATCATCGAGTGACGTGCCGGGCGTT
GGTGCTGCACCCTACAAAGTATAACCGCGATTTGTTTTTGCACAAGAACG
ATGCCGCGGCTTTACGACGCCCGCGCCCTACAATGGAGACCTTGCCGCAG
GACACGCTGAAGCAAATTTTCCGGTTCCTGCCTGCTCATTCTTTGTTGGC
ATCAGAGATTGTCTGTAGGCTCTGGAGGGACTTGGCAAGCATGGATGATG
CGCATTGGGAGCAACTTTGCAAACGGGCCTATGGGATTTCACCTGAAAAC
TTTTCACCACCACCAGACCCCGTTAAGCTACTGTACATGCTCACGTACTC
CTCGCTTTCTGAAATTAAGTATGGAGCGAACGGAGGAGGATCGGGCCGCA
TGCAAGGAAGCTTGCGGTTTTTGTTTTGAGTGCTTTATTGATTGCCTGTG
CGGCATAGTCATCGTTGATGAATGAGCGGGAGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|600008

>mRNA_7782-protein ID=mRNA_7782-protein|Name=jgi.p|Nanoce1779_2|600008|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MRKPRARQSNPKHRCSPSTAVPFKHKLPFCHPSSMLGPYRSLLRNQDVMC
QQLVSLSSNARAPILSSPASHTYTHPLSPFLSPYKCTLNSDPYGTRAIIP
VVRGRPRFPRRLALQFAMDEGDEDKEEEDNGSYDSAEERDREEEEQEDEK
VGAGLDVMRSRCDHRVTCRALVLHPTKYNRDLFLHKNDAAALRRPRPTME
TLPQDTLKQIFRFLPAHSLLASEIVCRLWRDLASMDDAHWEQLCKRAYGI
SPENFSPPPDPVKLLYMLTYSSLSEIKYGANGGGSGRMQGSLRFLF*
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mRNA from alignment at scaffold_21:317210..318722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7782 ID=mRNA_7782|Name=jgi.p|Nanoce1779_2|600008|organism=Nannochloropsis oceanica|type=mRNA|length=1513bp|location=Sequence derived from alignment at scaffold_21:317210..318722+ (Nannochloropsis oceanica)
ACAGGCCACGCCGAGGGTTTGTCTCTGTTTTTGTCTAGGGCGTTTAGGAG
GGCTGGCCACGACGGCGTGCGCCGCTCAAAGAGGACGCCAGGCTGACCCA
AGTTGGGAGGTGAAGTCCCGCGGCAGGTCACAAAGTGCATTTGGGGGACC
ACGCGTGACAACCACCGATGCCAAAGCACACGACAACGATTCGGCAGCAT
GAGCCGACGCGGCATGTCGATTCGGTCCCGAACGCTTTGTCGCTTTCTGG
TAAGTGCCTCGATGTCGCCTCATGAAACCATCGTTTGAATGCGAAAGCCG
AGAGCGCGGCAATCAAATCCAAAACATCGCTGCTCCCCATCCACTGCGGT
TCCATTCAAGCACAAGCTACCTTTTTGTCATCCTTCTTCCATGCTAGGCC
CATATCGATCCCTGTTGCGAAATCAAGATGTGATGTGTCAGCAGTTGGTG
TCTTTGTCCTCCAACGCCCGCGCACCCATTCTTTCATCTCCCGCCTCACA
TACATACACTCATCCGTTGTCTCCATTCCTTTCTCCATATAAATGCACAT
TGAATTCAGATCCATATGGCACCCGAGCCATCATCCCCGTGGTGAGGGGC
CGACCGCGCTTCCCACGTAGGCTGGCCTTACAGTTCGCAATGGACGAGGG
AGACGAGGACAAGGAAGAGGAGGACAACGGCAGTTACGACAGCGCCGAGG
AACGAGACCGGGAGGAGGAGGAGCAAGAGGATGAGAAAGTGGGCGCGGGC
CTGGATGTCATGAGGTCAAGATGTGATCATCGAGTGACGTGCCGGGCGTT
GGTGCTGCACCCTACAAAGTATAACCGCGATTTGTTTTTGCACAAGGTAG
GTAGTATATGTGCCCCCGGCCCCTCCTAGGCTCGTCTTTTCCGGTTCTCC
CGACATCAACACACACATGCATAAATATACCGGCACACAGTTTATAGTTG
TCCTTTTAATCACACACAAAACACCTACAGAACGATGCCGCGGCTTTACG
ACGCCCGCGCCCTACAATGGAGACCTTGCCGCAGGACACGCTGAAGCAAA
TTTTCCGGTTCCTGCCTGCTCATTCTTTGTTGGCATCAGAGATTGTCTGT
AGGCTCTGGAGGGACTTGGCAAGCATGGATGATGCGCATTGGGAGGTACG
GCATGAGGGAGGGAGAGAGCTGGCTGAATCGAAATTTCTGCGCCCATCCC
TCTGACGCTACCTCCCCCTATCTCTATACATTCCTCCCTATATTTCTTCA
GCAACTTTGCAAACGGGCCTATGGGATTTCACCTGAAAACTTTTCACCAC
CACCAGACCCCGTTAAGCTACTGTACATGCTCACGTACTCCTCGCTTTCT
GAAATTAAGTATGGAGCGAACGGAGGAGGATCGGGCCGCATGCAAGGAAG
CTTGCGGTTTTTGTTTTGAGTGCTTTATTGATTGCCTGTGCGGCATAGTC
ATCGTTGATGAATGAGCGGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTG
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Coding sequence (CDS) from alignment at scaffold_21:317210..318722+

>mRNA_7782 ID=mRNA_7782|Name=jgi.p|Nanoce1779_2|600008|organism=Nannochloropsis oceanica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_21:317210..318722+ (Nannochloropsis oceanica)
ATGCGAAAGCCGAGAGCGCGGCAATCAAATCCAAAACATCGCTGCTCCCC
ATCCACTGCGGTTCCATTCAAGCACAAGCTACCTTTTTGTCATCCTTCTT
CCATGCTAGGCCCATATCGATCCCTGTTGCGAAATCAAGATGTGATGTGT
CAGCAGTTGGTGTCTTTGTCCTCCAACGCCCGCGCACCCATTCTTTCATC
TCCCGCCTCACATACATACACTCATCCGTTGTCTCCATTCCTTTCTCCAT
ATAAATGCACATTGAATTCAGATCCATATGGCACCCGAGCCATCATCCCC
GTGGTGAGGGGCCGACCGCGCTTCCCACGTAGGCTGGCCTTACAGTTCGC
AATGGACGAGGGAGACGAGGACAAGGAAGAGGAGGACAACGGCAGTTACG
ACAGCGCCGAGGAACGAGACCGGGAGGAGGAGGAGCAAGAGGATGAGAAA
GTGGGCGCGGGCCTGGATGTCATGAGGTCAAGATGTGATCATCGAGTGAC
GTGCCGGGCGTTGGTGCTGCACCCTACAAAGTATAACCGCGATTTGTTTT
TGCACAAGAACGATGCCGCGGCTTTACGACGCCCGCGCCCTACAATGGAG
ACCTTGCCGCAGGACACGCTGAAGCAAATTTTCCGGTTCCTGCCTGCTCA
TTCTTTGTTGGCATCAGAGATTGTCTGTAGGCTCTGGAGGGACTTGGCAA
GCATGGATGATGCGCATTGGGAGCAACTTTGCAAACGGGCCTATGGGATT
TCACCTGAAAACTTTTCACCACCACCAGACCCCGTTAAGCTACTGTACAT
GCTCACGTACTCCTCGCTTTCTGAAATTAAGTATGGAGCGAACGGAGGAG
GATCGGGCCGCATGCAAGGAAGCTTGCGGTTTTTGTTTTGAATGCGAAAG
CCGAGAGCGCGGCAATCAAATCCAAAACATCGCTGCTCCCCATCCACTGC
GGTTCCATTCAAGCACAAGCTACCTTTTTGTCATCCTTCTTCCATGCTAG
GCCCATATCGATCCCTGTTGCGAAATCAAGATGTGATGTGTCAGCAGTTG
GTGTCTTTGTCCTCCAACGCCCGCGCACCCATTCTTTCATCTCCCGCCTC
ACATACATACACTCATCCGTTGTCTCCATTCCTTTCTCCATATAAATGCA
CATTGAATTCAGATCCATATGGCACCCGAGCCATCATCCCCGTGGTGAGG
GGCCGACCGCGCTTCCCACGTAGGCTGGCCTTACAGTTCGCAATGGACGA
GGGAGACGAGGACAAGGAAGAGGAGGACAACGGCAGTTACGACAGCGCCG
AGGAACGAGACCGGGAGGAGGAGGAGCAAGAGGATGAGAAAGTGGGCGCG
GGCCTGGATGTCATGAGGTCAAGATGTGATCATCGAGTGACGTGCCGGGC
GTTGGTGCTGCACCCTACAAAGTATAACCGCGATTTGTTTTTGCACAAGA
ACGATGCCGCGGCTTTACGACGCCCGCGCCCTACAATGGAGACCTTGCCG
CAGGACACGCTGAAGCAAATTTTCCGGTTCCTGCCTGCTCATTCTTTGTT
GGCATCAGAGATTGTCTGTAGGCTCTGGAGGGACTTGGCAAGCATGGATG
ATGCGCATTGGGAGCAACTTTGCAAACGGGCCTATGGGATTTCACCTGAA
AACTTTTCACCACCACCAGACCCCGTTAAGCTACTGTACATGCTCACGTA
CTCCTCGCTTTCTGAAATTAAGTATGGAGCGAACGGAGGAGGATCGGGCC
GCATGCAAGGAAGCTTGCGGTTTTTGTTTTGAATGCGAAAGCCGAGAGCG
CGGCAATCAAATCCAAAACATCGCTGCTCCCCATCCACTGCGGTTCCATT
CAAGCACAAGCTACCTTTTTGTCATCCTTCTTCCATGCTAGGCCCATATC
GATCCCTGTTGCGAAATCAAGATGTGATGTGTCAGCAGTTGGTGTCTTTG
TCCTCCAACGCCCGCGCACCCATTCTTTCATCTCCCGCCTCACATACATA
CACTCATCCGTTGTCTCCATTCCTTTCTCCATATAAATGCACATTGAATT
CAGATCCATATGGCACCCGAGCCATCATCCCCGTGGTGAGGGGCCGACCG
CGCTTCCCACGTAGGCTGGCCTTACAGTTCGCAATGGACGAGGGAGACGA
GGACAAGGAAGAGGAGGACAACGGCAGTTACGACAGCGCCGAGGAACGAG
ACCGGGAGGAGGAGGAGCAAGAGGATGAGAAAGTGGGCGCGGGCCTGGAT
GTCATGAGGTCAAGATGTGATCATCGAGTGACGTGCCGGGCGTTGGTGCT
GCACCCTACAAAGTATAACCGCGATTTGTTTTTGCACAAGAACGATGCCG
CGGCTTTACGACGCCCGCGCCCTACAATGGAGACCTTGCCGCAGGACACG
CTGAAGCAAATTTTCCGGTTCCTGCCTGCTCATTCTTTGTTGGCATCAGA
GATTGTCTGTAGGCTCTGGAGGGACTTGGCAAGCATGGATGATGCGCATT
GGGAGCAACTTTGCAAACGGGCCTATGGGATTTCACCTGAAAACTTTTCA
CCACCACCAGACCCCGTTAAGCTACTGTACATGCTCACGTACTCCTCGCT
TTCTGAAATTAAGTATGGAGCGAACGGAGGAGGATCGGGCCGCATGCAAG
GAAGCTTGCGGTTTTTGTTTTGA
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Synonyms
Publications