jgi.p|Nanoce1779_2|600005, mRNA_7781 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600005
Unique Name	mRNA_7781
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2168
Alignment location	scaffold_21:313069..315236 -

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Properties


Property Name	Value
TranscriptId	600091
Track	FilteredModels2
ProteinId	600005

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:313069..315236 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600005	gene_7781	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600005	mRNA_7781-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7781	CDS_7781	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:313069..315236-
coding sequence from alignment at scaffold_21:313069..315236-

mRNA sequence

>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Nanoce1779_2|600005|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp
AGCAGCAGCAGCAGCAGCAGAAGCAGGAGCAGGAGCAGCAGAAGAAACAG
AGGCAGGTGTAGAGTACTCAACCGCCCCGGCCACGGGCCTCGTGCCGTTA
GGAAGTCTCTTGGACCGTTTCGATAAACGTGCCCCTGGGCAAAAAGTCAT
AGTCTGCAATATGGTCATGGAGCACGTGCGTGTCAAAGGCCTGATTAGAG
AAGGCCTCTCTTTCCTAGATGCCATGCGCGCGCTCCACATCCCCCGAAAA
TCTCTCACACTCCTCCCCCTCCTCAAGCTCTGTGCATCTTCCGGCCGCGT
GCAAGAAATGGTGACGCTCGTCGAAGAAATGAAAGACAAGGACCACGTGG
CACCCACGGCTCACATGTACTCTCAAACAATCGAGGCAGCGGCAAGCGCA
GGCATGGTTGATGAGGCCCTCCGTCTCTTCGCTACCATGAATGCGGAAGG
CGTTGCTGTCAGTGAAGGGAGCTGCATTGATCTTATGGCAGCACTGGCAC
GTAATGGAGACTGGTCTCGCGCATTGGACCTACTTCAAGACGTGCGGGCC
TGCACCAAACGACCACCTACGTGTATTATCTATACCACGGCGGTCAATGC
GTGTGGGAATGGAGGTGCTTGGGAGATGGCGCTGATGCTCATGAAAAGGA
TGGAGGAAGAAGGCATCGCTCCCAATACATACACATATGGCGCAGCAATC
AAGGCGTGTGCAAGAGCGGGGAAGTGGGAGCAGGCTGAAAAGTTATTTGC
AGAGATGGACGAGAGGGGGGTAGCTCAGAATGAGGTGACTTTCACGGCGA
TTTTGGATGCATATGCCAAGGCAGGTCGAGCGCGCGATGCTGCTACGTGC
TTGGAGGCGATGAAGACGAAGGGGTTACGACCTTCTACCCCTCATTATAC
TGCTGTTATTGACGCATGCAGTCGTACGGGGGAGTACAGGCAGGCGTTGC
TATGGTTGGAAGAGATGAAAAGGGGAGAAGTGCCAATCAACACCCTCACC
TACTCGGCTTCGCTCTCCGCGTGTGGCAAAGGCGGGGCCTGGGATGAAGC
GGTGCGGGTGCTATTAAACATCCTTTCCGCAGGCGAGAGGCCATCTTCTG
TAATTTATATGCTGACAATCGATGCCTGCCGCCGTGCGAACCAATGGCCC
GTCGCTGCTTACCTGTGGGATATGCTGGAGTATACTGACTCTACCTCGCT
GAACCAACCCACCCTCAACTCTCTCATTTGCTCCATGGAGCATCCCGCCC
TTCTCCCGACCATGGCGTGGTATTACAAACGTGCTTATGAGAGAGGGAGG
GTTAATCATTGGTCAATTCAATTCTTTCGGGTGATGGACTTGCACAACTT
TTCCCGGCCTCTGTCAAAGGCGGCGTTGTATCATGTTTTGACTAGCATGC
TCAGGAAATATGGACCAGAGATCACCAAAGATGCCAATAGAAGAAGCGAG
GAGTTGACCACAGCAGCAACAGCAGCAACAGCAACAGCAGCAAGACCTTT
CACCGAGAAGATGGCAAGGGGTACATTCAAGACAACCGAAACCACCACAA
ATGAAAACACCAGCAGCAAAAGCAGCAGAACCACGAACACCATCCTCACC
AACAATAACAACAAAAAATGGTCTCCCAGCGAGATGTATCTACCCTGGCC
CCGAAACCAATCTCGGCACGGGTACATCCAAGACCCGCGCGACCCCCTCA
TCATCGTCACCGGCCACGGTCGCCGCCGAGCAGCAGGCACTTCCATCCTC
CGCGACGACGTGTCAGAGTTTCTAAAATCGGAGTTTCGCCCGTCTTTACC
CACAGAAACGGTGCCGTATAACCCAGGGCGGCTGTTGGTGCCTAGCCAGA
GTTTGTTGGCATATGTGCGGGCCATGGTGCTTAGTGATGCAGAGGGGAGG
GGAGGGGAGGATTGGAAGTAGGAAGCAGATGTAGGTGGGAGGGTTGGCTA
GGAACGTTTCTTGGCAAGGTGATATACTCAGTATATATGTGTGCGAACAT
AGGGAAGGATGTAACAGAATCCTGCCCATGCCGAGGTAAGGGGGAGAGAG
GGAGGGGAAGGGGGCACAGAGAGATGGTCAAGTGATGTGAGCATCACATT
TGAACACTGGACGTAAAACAATGCGACTTATCTATTGCGCTCCCAAAGCA
ACAAATAGAGTGCCAAAG

protein sequence of jgi.p|Nanoce1779_2|600005

>mRNA_7781-protein ID=mRNA_7781-protein|Name=jgi.p|Nanoce1779_2|600005|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MVMEHVRVKGLIREGLSFLDAMRALHIPRKSLTLLPLLKLCASSGRVQEM
VTLVEEMKDKDHVAPTAHMYSQTIEAAASAGMVDEALRLFATMNAEGVAV
SEGSCIDLMAALARNGDWSRALDLLQDVRACTKRPPTCIIYTTAVNACGN
GGAWEMALMLMKRMEEEGIAPNTYTYGAAIKACARAGKWEQAEKLFAEMD
ERGVAQNEVTFTAILDAYAKAGRARDAATCLEAMKTKGLRPSTPHYTAVI
DACSRTGEYRQALLWLEEMKRGEVPINTLTYSASLSACGKGGAWDEAVRV
LLNILSAGERPSSVIYMLTIDACRRANQWPVAAYLWDMLEYTDSTSLNQP
TLNSLICSMEHPALLPTMAWYYKRAYERGRVNHWSIQFFRVMDLHNFSRP
LSKAALYHVLTSMLRKYGPEITKDANRRSEELTTAATAATATAARPFTEK
MARGTFKTTETTTNENTSSKSSRTTNTILTNNNNKKWSPSEMYLPWPRNQ
SRHGYIQDPRDPLIIVTGHGRRRAAGTSILRDDVSEFLKSEFRPSLPTET
VPYNPGRLLVPSQSLLAYVRAMVLSDAEGRGGEDWK*

mRNA from alignment at scaffold_21:313069..315236-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Nanoce1779_2|600005|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_21:313069..315236- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGAAGCAGGAGCAGGAGCAGCAGAAGAAACAG
AGGCAGGTGTAGAGTACTCAACCGCCCCGGCCACGGGCCTCGTGCCGTTA
GGAAGTCTCTTGGACCGTTTCGATAAACGTGCCCCTGGGCAAAAAGTCAT
AGTCTGCAATATGGTCATGGAGCACGTGCGTGTCAAAGGCCTGATTAGAG
AAGGCCTCTCTTTCCTAGATGCCATGCGCGCGCTCCACATCCCCCGAAAA
TCTCTCACACTCCTCCCCCTCCTCAAGCTCTGTGCATCTTCCGGCCGCGT
GCAAGAAATGGTGACGCTCGTCGAAGAAATGAAAGACAAGGACCACGTGG
CACCCACGGCTCACATGTACTCTCAAACAATCGAGGCAGCGGCAAGCGCA
GGCATGGTTGATGAGGCCCTCCGTCTCTTCGCTACCATGAATGCGGAAGG
CGTTGCTGTCAGTGAAGGGAGCTGCATTGATCTTATGGCAGCACTGGCAC
GTAATGGAGACTGGTCTCGCGCATTGGACCTACTTCAAGACGTGCGGGCC
TGCACCAAACGACCACCTACGTGTATTATCTATACCACGGCGGTCAATGC
GTGTGGGAATGGAGGTGCTTGGGAGATGGCGCTGATGCTCATGAAAAGGA
TGGAGGAAGAAGGCATCGCTCCCAATACATACACATATGGCGCAGCAATC
AAGGCGTGTGCAAGAGCGGGGAAGTGGGAGCAGGCTGAAAAGTTATTTGC
AGAGATGGACGAGAGGGGGGTAGCTCAGAATGAGGTGACTTTCACGGCGA
TTTTGGATGCATATGCCAAGGCAGGTCGAGCGCGCGATGCTGCTACGTGC
TTGGAGGCGATGAAGACGAAGGGGTTACGACCTTCTACCCCTCATTATAC
TGCTGTTATTGACGCATGCAGTCGTACGGGGGAGTACAGGCAGGCGTTGC
TATGGTTGGAAGAGATGAAAAGGGGAGAAGTGCCAATCAACACCCTCACC
TACTCGGCTTCGCTCTCCGCGTGTGGCAAAGGCGGGGCCTGGGATGAAGC
GGTGCGGGTGCTATTAAACATCCTTTCCGCAGGCGAGAGGCCATCTTCTG
TAATTTATATGCTGACAATCGATGCCTGCCGCCGTGCGAACCAATGGCCC
GTCGCTGCTTACCTGTGGGATATGCTGGAGTATACTGACTCTACCTCGCT
GAACCAACCCACCCTCAACTCTCTCATTTGCTCCATGGAGCATCCCGCCC
TTCTCCCGACCATGGCGTGGTATTACAAACGTGCTTATGAGAGAGGGAGG
GTTAATCATTGGTCAATTCAATTCTTTCGGGTGATGGACTTGCACAACTT
TTCCCGGCCTCTGTCAAAGGCGGCGTTGTATCATGTTTTGACTAGCATGC
TCAGGAAATATGGACCAGAGATCACCAAAGATGCCAATAGAAGAAGCGAG
GAGTTGACCACAGCAGCAACAGCAGCAACAGCAACAGCAGCAAGACCTTT
CACCGAGAAGATGGCAAGGGGTACATTCAAGACAACCGAAACCACCACAA
ATGAAAACACCAGCAGCAAAAGCAGCAGAACCACGAACACCATCCTCACC
AACAATAACAACAAAAAATGGTCTCCCAGCGAGATGTATCTACCCTGGCC
CCGAAACCAATCTCGGCACGGGTACATCCAAGACCCGCGCGACCCCCTCA
TCATCGTCACCGGCCACGGTCGCCGCCGAGCAGCAGGCACTTCCATCCTC
CGCGACGACGTGTCAGAGTTTCTAAAATCGGAGTTTCGCCCGTCTTTACC
CACAGAAACGGTGCCGTATAACCCAGGGCGGCTGTTGGTGCCTAGCCAGA
GTTTGTTGGCATATGTGCGGGCCATGGTGCTTAGTGATGCAGAGGGGAGG
GGAGGGGAGGATTGGAAGTAGGAAGCAGATGTAGGTGGGAGGGTTGGCTA
GGAACGTTTCTTGGCAAGGTGATATACTCAGTATATATGTGTGCGAACAT
AGGGAAGGATGTAACAGAATCCTGCCCATGCCGAGGTAAGGGGGAGAGAG
GGAGGGGAAGGGGGCACAGAGAGATGGTCAAGTGATGTGAGCATCACATT
TGAACACTGGACGTAAAACAATGCGACTTATCTATTGCGCTCCCAAAGCA
ACAAATAGAGTGCCAAAG

Coding sequence (CDS) from alignment at scaffold_21:313069..315236-

>mRNA_7781 ID=mRNA_7781|Name=jgi.p|Nanoce1779_2|600005|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at scaffold_21:313069..315236- (Nannochloropsis oceanica)
ATGGTCATGGAGCACGTGCGTGTCAAAGGCCTGATTAGAGAAGGCCTCTC
TTTCCTAGATGCCATGCGCGCGCTCCACATCCCCCGAAAATCTCTCACAC
TCCTCCCCCTCCTCAAGCTCTGTGCATCTTCCGGCCGCGTGCAAGAAATG
GTGACGCTCGTCGAAGAAATGAAAGACAAGGACCACGTGGCACCCACGGC
TCACATGTACTCTCAAACAATCGAGGCAGCGGCAAGCGCAGGCATGGTTG
ATGAGGCCCTCCGTCTCTTCGCTACCATGAATGCGGAAGGCGTTGCTGTC
AGTGAAGGGAGCTGCATTGATCTTATGGCAGCACTGGCACGTAATGGAGA
CTGGTCTCGCGCATTGGACCTACTTCAAGACGTGCGGGCCTGCACCAAAC
GACCACCTACGTGTATTATCTATACCACGGCGGTCAATGCGTGTGGGAAT
GGAGGTGCTTGGGAGATGGCGCTGATGCTCATGAAAAGGATGGAGGAAGA
AGGCATCGCTCCCAATACATACACATATGGCGCAGCAATCAAGGCGTGTG
CAAGAGCGGGGAAGTGGGAGCAGGCTGAAAAGTTATTTGCAGAGATGGAC
GAGAGGGGGGTAGCTCAGAATGAGGTGACTTTCACGGCGATTTTGGATGC
ATATGCCAAGGCAGGTCGAGCGCGCGATGCTGCTACGTGCTTGGAGGCGA
TGAAGACGAAGGGGTTACGACCTTCTACCCCTCATTATACTGCTGTTATT
GACGCATGCAGTCGTACGGGGGAGTACAGGCAGGCGTTGCTATGGTTGGA
AGAGATGAAAAGGGGAGAAGTGCCAATCAACACCCTCACCTACTCGGCTT
CGCTCTCCGCGTGTGGCAAAGGCGGGGCCTGGGATGAAGCGGTGCGGGTG
CTATTAAACATCCTTTCCGCAGGCGAGAGGCCATCTTCTGTAATTTATAT
GCTGACAATCGATGCCTGCCGCCGTGCGAACCAATGGCCCGTCGCTGCTT
ACCTGTGGGATATGCTGGAGTATACTGACTCTACCTCGCTGAACCAACCC
ACCCTCAACTCTCTCATTTGCTCCATGGAGCATCCCGCCCTTCTCCCGAC
CATGGCGTGGTATTACAAACGTGCTTATGAGAGAGGGAGGGTTAATCATT
GGTCAATTCAATTCTTTCGGGTGATGGACTTGCACAACTTTTCCCGGCCT
CTGTCAAAGGCGGCGTTGTATCATGTTTTGACTAGCATGCTCAGGAAATA
TGGACCAGAGATCACCAAAGATGCCAATAGAAGAAGCGAGGAGTTGACCA
CAGCAGCAACAGCAGCAACAGCAACAGCAGCAAGACCTTTCACCGAGAAG
ATGGCAAGGGGTACATTCAAGACAACCGAAACCACCACAAATGAAAACAC
CAGCAGCAAAAGCAGCAGAACCACGAACACCATCCTCACCAACAATAACA
ACAAAAAATGGTCTCCCAGCGAGATGTATCTACCCTGGCCCCGAAACCAA
TCTCGGCACGGGTACATCCAAGACCCGCGCGACCCCCTCATCATCGTCAC
CGGCCACGGTCGCCGCCGAGCAGCAGGCACTTCCATCCTCCGCGACGACG
TGTCAGAGTTTCTAAAATCGGAGTTTCGCCCGTCTTTACCCACAGAAACG
GTGCCGTATAACCCAGGGCGGCTGTTGGTGCCTAGCCAGAGTTTGTTGGC
ATATGTGCGGGCCATGGTGCTTAGTGATGCAGAGGGGAGGGGAGGGGAGG
ATTGGAAGTAG

Synonyms

Publications