jgi.p|Nanoce1779_2|632502, mRNA_7780 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632502
Unique NamemRNA_7780
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1544
Alignment locationscaffold_21:310481..312196 -

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Properties
Property NameValue
TranscriptId632588
TrackFilteredModels2
ProteinId632502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:310481..312196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632502gene_7780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632502mRNA_7780-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7780CDS_7780Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7780 ID=mRNA_7780|Name=jgi.p|Nanoce1779_2|632502|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
ATGCGCGGCGGGCGATGGTCGGAAGCCGAGTGCAAGTTCGCAGAGATGGT
GATGGAGGGATTCCTAACAGGCATGTTGCCTTTGCGTGAGGGTGGACGGT
TGGGCACATTTTTGTGTGCTCTCCTTCAGTGTACTCCTGCCAGGCTTTCC
TCGAAGCTTCGCACGGGCAAGCGGAATTTCAAATACCAACCAGGCTCCAA
CACGACCCGCGATCAAATCTTTCAATACGAGCAACAGCAACGGAAATTAT
CACAGCAAGAAGAATTATTTTTGCATTATTTATCGTCGGAGGAGGCCGCC
GTGGCATCTCACAGCCTTCAGCTTGAGTGGCGGCTGCAGTTCGTTGAGCT
TGCCCAGCAGCGGGGCATCCATGTGAACAACCTGCAAGAATGGGGACCTC
TCTTACGAATCGCCTCCTTGTCCAACTGTGCTGGCAGTGGTAGCACAGAT
GGTAGCAGTAGCAGTAGGAACCACGCCTTGGGGCTGTTGCCTTTGTCCGG
AGGGGATGAGACGATGATGGATACAGCCGCAACAGCAGCAGATGGCATGC
CCTCCTCCCTCCCTTCTCTACCCCACAGAAAGCGCACTACCTCGTCCTCC
TCCTTAGCCGAAAGTTATCAAGGGTCAATGCACCAACGCTCAGCTCCCCG
TCAACAAACCTTATCTCCTCCTTCTTCCTCCTCCCGCCCCGCGTCCCCTT
CCCCAATGCGCAACATTGCCCCGCTCATGGTCCGGATGGCAGCAGACCGC
CGTCGTAATTTCACTGTGGAGCATGGGGTGATGGCTGCCACCACGATCGA
GGATTTGCTTCGTCTGTTACGGCAGGGTCCAAGCCCGGAGTGTGCCGTGT
TGGCGGGGGCGTCGAATGGCACTATTTTCTTTGTGTCCGCGGGTATGCAG
AGATTGCTTCAATGGGATCATGTTGATTTGTTGGGAAGTCGGTTGGTAGA
CCACGGCCTTGGTGATAGTGTGGGTGTAGGCGGAACATTCTTCGGTTGCG
ACGACGAGACAACTCTTTCCTTCCTCGACAGCTGACAGCTTTTGCGACCG
ACGATTTCCTCCTCCTCCATGCTCCCTGCCCCGCTGCATCCGAGCCACCG
CAGCAGGTACCTTATGCCCAACAGCGACATAAACAGCAGCAGCAGCTAGA
GCAACAACAAGAACAAGAACATCGACCTCTTATCACCGCGTCAGTGTCAC
GAGTGGAGCTCGAGCAAGACTTTCGTAATCTTGCCCTTACACAACGACAA
CAGATTAACTCTTCCTCCCCTTCCACCTCTTCTTCGCTCCCTCCTCATCC
TCGTCGTCCATTTTATTCTCCCCCTCAACCCTCCTCATCAAATGTCGTCC
AACCTGCTGTCTTACGTCTACATAACCGGGAATGTCAGTCGTCCTCTGCG
GAGGGGGGCTGCACCAACCCCCATCTTCCTCTCTCCATGCACTACGACAC
CAGCGGTAAGGCGAACAATGTCTTAGTCGCTAGCGGGAAGTGCAGCAGCA
GCAGCAGCAGCAGCAGCCACAGCAGCAGTAGCTGTAGAAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|632502

>mRNA_7780-protein ID=mRNA_7780-protein|Name=jgi.p|Nanoce1779_2|632502|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MRGGRWSEAECKFAEMVMEGFLTGMLPLREGGRLGTFLCALLQCTPARLS
SKLRTGKRNFKYQPGSNTTRDQIFQYEQQQRKLSQQEELFLHYLSSEEAA
VASHSLQLEWRLQFVELAQQRGIHVNNLQEWGPLLRIASLSNCAGSGSTD
GSSSSRNHALGLLPLSGGDETMMDTAATAADGMPSSLPSLPHRKRTTSSS
SLAESYQGSMHQRSAPRQQTLSPPSSSSRPASPSPMRNIAPLMVRMAADR
RRNFTVEHGVMAATTIEDLLRLLRQGPSPECAVLAGASNGTIFFVSAGMQ
RLLQWDHVDLLGSRLVDHGLGDSVGVGGTFFGCDDETTLSFLDS*
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mRNA from alignment at scaffold_21:310481..312196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7780 ID=mRNA_7780|Name=jgi.p|Nanoce1779_2|632502|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at scaffold_21:310481..312196- (Nannochloropsis oceanica)
ATGCGCGGCGGGCGATGGTCGGAAGCCGAGTGCAAGTTCGCAGAGATGGT
GATGGAGGGATTCCTAACAGGCATGTTGCCTTTGCGTGAGGGTGGACGGT
TGGGCACATTTTTGTGTGCTCTCCTTCAGTGTACTCCTGCCAGGCTTTCC
TCGAAGCTTCGCACGGGCAAGCGGAATTTCAAATACCAACCAGGCTCCAA
CACGACCCGCGATCAAATCTTTCAATACGAGCAACAGCAACGGAAATTAT
CACAGCAAGAAGAATTATTTTTGCATTATTTATCGTCGGAGGAGGCCGCC
GTGGCATCTCACAGCCTTCAGCTTGAGTGGCGGCTGCAGTTCGTTGAGCT
TGCCCAGCAGCGGGGCATCCATGTGAACAACCTGCAAGAATGGGGACCTC
TCTTACGAATCGCCTCCTTGTCCAACTGTGCTGGCAGTGGTAGCACAGAT
GGTAGCAGTAGCAGTAGGAACCACGCCTTGGGGCTGTTGCCTTTGTCCGG
AGGGGATGAGACGATGATGGATACAGCCGCAACAGCAGCAGATGGCATGC
CCTCCTCCCTCCCTTCTCTACCCCACAGAAAGCGCACTACCTCGTCCTCC
TCCTTAGCCGAAAGTTATCAAGGGTCAATGCACCAACGCTCAGCTCCCCG
TCAACAAACCTTATCTCCTCCTTCTTCCTCCTCCCGCCCCGCGTCCCCTT
CCCCAATGCGCAACATTGCCCCGCTCATGGTCCGGATGGCAGCAGACCGC
CGTCGTAATTTCACTGTGGAGCATGGGGTGATGGCTGCCACCACGATCGA
GGATTTGCTTCGTCTGTTACGGCAGGGTCCAAGCCCGGAGTGTGCCGTGT
TGGCGGGGGCGTCGAATGGCACTATTTTCTTTGTGTCCGCGGGTATGCAG
AGATTGCTTCAATGGGATCATGTTGATTTGTTGGGAAGTCGGTTGGTAGA
CCACGGCCTTGGTGATAGTGTGGGTGTAGGCGGAACAGTAAGAAGAGAAG
CAGGAGGCGGGGGGGGCCTGGGGTTGGTGCATAGGGAGGATGCTGAGTTG
TTGTCGACGGTGTTCCGGCAGACACAACAGCATGTGAAGAACTTGGTCGA
CAGGATGGGTAGCCCGCAACTACCGATCCAAGAGCGTGATTTGATGCTTT
TACCCGTAGTTCTTCGGTTGCGACGACGAGACAACTCTTTCCTTCCTCGA
CAGCTGACAGCTTTTGCGACCGACGATTTCCTCCTCCTCCATGCTCCCTG
CCCCGCTGCATCCGAGCCACCGCAGCAGGTACCTTATGCCCAACAGCGAC
ATAAACAGCAGCAGCAGCTAGAGCAACAACAAGAACAAGAACATCGACCT
CTTATCACCGCGTCAGTGTCACGAGTGGAGCTCGAGCAAGACTTTCGTAA
TCTTGCCCTTACACAACGACAACAGATTAACTCTTCCTCCCCTTCCACCT
CTTCTTCGCTCCCTCCTCATCCTCGTCGTCCATTTTATTCTCCCCCTCAA
CCCTCCTCATCAAATGTCGTCCAACCTGCTGTCTTACGTCTACATAACCG
GGAATGTCAGTCGTCCTCTGCGGAGGGGGGCTGCACCAACCCCCATCTTC
CTCTCTCCATGCACTACGACACCAGCGGTAAGGCGAACAATGTCTTAGTC
GCTAGCGGGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCCACAGCAGCAG
TAGCTGTAGAAGCAGC
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Coding sequence (CDS) from alignment at scaffold_21:310481..312196-

>mRNA_7780 ID=mRNA_7780|Name=jgi.p|Nanoce1779_2|632502|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_21:310481..312196- (Nannochloropsis oceanica)
TTCTTCGGTTGCGACGACGAGACAACTCTTTCCTTCCTCGACAGCTGAAT
GCGCGGCGGGCGATGGTCGGAAGCCGAGTGCAAGTTCGCAGAGATGGTGA
TGGAGGGATTCCTAACAGGCATGTTGCCTTTGCGTGAGGGTGGACGGTTG
GGCACATTTTTGTGTGCTCTCCTTCAGTGTACTCCTGCCAGGCTTTCCTC
GAAGCTTCGCACGGGCAAGCGGAATTTCAAATACCAACCAGGCTCCAACA
CGACCCGCGATCAAATCTTTCAATACGAGCAACAGCAACGGAAATTATCA
CAGCAAGAAGAATTATTTTTGCATTATTTATCGTCGGAGGAGGCCGCCGT
GGCATCTCACAGCCTTCAGCTTGAGTGGCGGCTGCAGTTCGTTGAGCTTG
CCCAGCAGCGGGGCATCCATGTGAACAACCTGCAAGAATGGGGACCTCTC
TTACGAATCGCCTCCTTGTCCAACTGTGCTGGCAGTGGTAGCACAGATGG
TAGCAGTAGCAGTAGGAACCACGCCTTGGGGCTGTTGCCTTTGTCCGGAG
GGGATGAGACGATGATGGATACAGCCGCAACAGCAGCAGATGGCATGCCC
TCCTCCCTCCCTTCTCTACCCCACAGAAAGCGCACTACCTCGTCCTCCTC
CTTAGCCGAAAGTTATCAAGGGTCAATGCACCAACGCTCAGCTCCCCGTC
AACAAACCTTATCTCCTCCTTCTTCCTCCTCCCGCCCCGCGTCCCCTTCC
CCAATGCGCAACATTGCCCCGCTCATGGTCCGGATGGCAGCAGACCGCCG
TCGTAATTTCACTGTGGAGCATGGGGTGATGGCTGCCACCACGATCGAGG
ATTTGCTTCGTCTGTTACGGCAGGGTCCAAGCCCGGAGTGTGCCGTGTTG
GCGGGGGCGTCGAATGGCACTATTTTCTTTGTGTCCGCGGGTATGCAGAG
ATTGCTTCAATGGGATCATGTTGATTTGTTGGGAAGTCGGTTGGTAGACC
ACGGCCTTGGTGATAGTGTGGGTGTAGGCGGAACATTCTTCGGTTGCGAC
GACGAGACAACTCTTTCCTTCCTCGACAGCTGAATGCGCGGCGGGCGATG
GTCGGAAGCCGAGTGCAAGTTCGCAGAGATGGTGATGGAGGGATTCCTAA
CAGGCATGTTGCCTTTGCGTGAGGGTGGACGGTTGGGCACATTTTTGTGT
GCTCTCCTTCAGTGTACTCCTGCCAGGCTTTCCTCGAAGCTTCGCACGGG
CAAGCGGAATTTCAAATACCAACCAGGCTCCAACACGACCCGCGATCAAA
TCTTTCAATACGAGCAACAGCAACGGAAATTATCACAGCAAGAAGAATTA
TTTTTGCATTATTTATCGTCGGAGGAGGCCGCCGTGGCATCTCACAGCCT
TCAGCTTGAGTGGCGGCTGCAGTTCGTTGAGCTTGCCCAGCAGCGGGGCA
TCCATGTGAACAACCTGCAAGAATGGGGACCTCTCTTACGAATCGCCTCC
TTGTCCAACTGTGCTGGCAGTGGTAGCACAGATGGTAGCAGTAGCAGTAG
GAACCACGCCTTGGGGCTGTTGCCTTTGTCCGGAGGGGATGAGACGATGA
TGGATACAGCCGCAACAGCAGCAGATGGCATGCCCTCCTCCCTCCCTTCT
CTACCCCACAGAAAGCGCACTACCTCGTCCTCCTCCTTAGCCGAAAGTTA
TCAAGGGTCAATGCACCAACGCTCAGCTCCCCGTCAACAAACCTTATCTC
CTCCTTCTTCCTCCTCCCGCCCCGCGTCCCCTTCCCCAATGCGCAACATT
GCCCCGCTCATGGTCCGGATGGCAGCAGACCGCCGTCGTAATTTCACTGT
GGAGCATGGGGTGATGGCTGCCACCACGATCGAGGATTTGCTTCGTCTGT
TACGGCAGGGTCCAAGCCCGGAGTGTGCCGTGTTGGCGGGGGCGTCGAAT
GGCACTATTTTCTTTGTGTCCGCGGGTATGCAGAGATTGCTTCAATGGGA
TCATGTTGATTTGTTGGGAAGTCGGTTGGTAGACCACGGCCTTGGTGATA
GTGTGGGTGTAGGCGGAACA
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Synonyms
Publications