jgi.p|Nanoce1779_2|600002, mRNA_7779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600002
Unique NamemRNA_7779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_21:309146..310480 -

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Properties
Property NameValue
TranscriptId600088
TrackFilteredModels2
ProteinId600002
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:309146..310480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600002gene_7779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600002mRNA_7779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7779CDS_7779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7779 ID=mRNA_7779|Name=jgi.p|Nanoce1779_2|600002|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
AGCATAATCAGCCGCAGCAGCAGCAGCAGTACCCACAGCAGCGGTCGGGC
CAGTTCCCCGTTTCCATCGACGGGGATGGAGGTCGAAAGACCGTGGGAAG
ACGAGGGCATGCGCGACGAAAAATGGGTCAATACCATTACCGTTTCTAGT
GCTAAGAGAGGCTCGGTCGGAGGAAGAAATGGTAATAGAGTAGAATCAGA
TTCATATGGAATGTCAGTGAGGGAGGGAGGGAGCGCTTGGGCAGATTCCG
ATGGGTTGGAGTGGGCGGCAGACGAGGAGATAAGCCAGGCCCTTCAAGCG
CTCGCACGGGCACCTTCCCCTCCTTTGGAGAACAACGCGTGTGGCGGGGC
ATACGATTTGTGCTACTCCCCCCCGACTACGTTTGAAGAAACGATGCGTT
CTTTCCTTCAGGAGCTGCCCGCCCAGGCTTTCCAGTGCACGGACGTGTGG
GTGCCATCAAGGGACCCGAACTCGGACCGCATTAGTTTGCAGTTTGGCGG
AGGGGTGGCTCTGAGGGGGAGTTTGAGTGAGTGGATATTTTATTCGCGGA
ATTTTGCATTTTATGAGGGGCAGGGGATGCCCGGGAGGGTTTTTAGGAAT
ATGGCGTGTGAGTACAGGGAGGATGTGGCAAGTTTGGATTCCACCCTGTT
TTTGAGGAGGGATGGGGCGCAGATGGTGGGCGTGCATGCTTACTTTGGGG
TGCCGGTGGTCCAGGATGAGATGGTCTTTGTGTTGGTCTTTTATTCGAGC
CATGCGAACTCCCGGTATATCACCCATGAAGTGCTTGAGTTCATTAAGCA
CACTGTGGCGTCGTGGAGGGTGGTGTTCGCTCCGCCCTCTATGCCTGCTC
TTGCTGCTGCTGCTGCTTGTAGTGGTGGTGGTGGCTCGAATGGGGCAGGT
GGGGCGGTCGCGTCCCCTCCTAGGGAGGTGCCAGAGTATTTGTCGTAATG
CTGAGGGGAGGTGGCGAAGGATGGGTAGAGATGGGAGGGAGAGAGGGAAA
GAAGCAGGAAGAATGGAAGTCAAACGAGATGTGGAGAGCGACTTTCTGTG
CAGGTGAAGGTGAAGAAGGTGGAAACAGAATATCTGAAGCTGGCCTTTTC
GTTTTTGGTCGTGGAGAAGGGAGGGGGAGATAAAAAAAGGAGTTGAGTAC
ACTATTACTATACAGTAAATGTAAATATTTACACGCAAACACAAACAATT
AATCATTATGTGCAACGTAATAGCGAAACAGTGGGTAGAAAGGTTAGCAG
AGGAGAAAGCAAGAAACGAGATCGAAATTTTGACGTCCAAGACTCAGTGA
GAAGGAGAGACGGAGGGAGGGACGGAGGGACGGAG
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protein sequence of jgi.p|Nanoce1779_2|600002

>mRNA_7779-protein ID=mRNA_7779-protein|Name=jgi.p|Nanoce1779_2|600002|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MEVERPWEDEGMRDEKWVNTITVSSAKRGSVGGRNGNRVESDSYGMSVRE
GGSAWADSDGLEWAADEEISQALQALARAPSPPLENNACGGAYDLCYSPP
TTFEETMRSFLQELPAQAFQCTDVWVPSRDPNSDRISLQFGGGVALRGSL
SEWIFYSRNFAFYEGQGMPGRVFRNMACEYREDVASLDSTLFLRRDGAQM
VGVHAYFGVPVVQDEMVFVLVFYSSHANSRYITHEVLEFIKHTVASWRVV
FAPPSMPALAAAAACSGGGGSNGAGGAVASPPREVPEYLS*
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mRNA from alignment at scaffold_21:309146..310480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7779 ID=mRNA_7779|Name=jgi.p|Nanoce1779_2|600002|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_21:309146..310480- (Nannochloropsis oceanica)
AGCATAATCAGCCGCAGCAGCAGCAGCAGTACCCACAGCAGCGGTCGGGC
CAGTTCCCCGTTTCCATCGACGGGGATGGAGGTCGAAAGACCGTGGGAAG
ACGAGGGCATGCGCGACGAAAAATGGGTCAATACCATTACCGTTTCTAGT
GCTAAGAGAGGCTCGGTCGGAGGAAGAAATGGTAATAGAGTAGAATCAGA
TTCATATGGAATGTCAGTGAGGGAGGGAGGGAGCGCTTGGGCAGATTCCG
ATGGGTTGGAGTGGGCGGCAGACGAGGAGATAAGCCAGGCCCTTCAAGCG
CTCGCACGGGCACCTTCCCCTCCTTTGGAGAACAACGCGTGTGGCGGGGC
ATACGATTTGTGCTACTCCCCCCCGACTACGTTTGAAGAAACGATGCGTT
CTTTCCTTCAGGAGCTGCCCGCCCAGGCTTTCCAGTGCACGGACGTGTGG
GTGCCATCAAGGGACCCGAACTCGGACCGCATTAGTTTGCAGTTTGGCGG
AGGGGTGGCTCTGAGGGGGAGTTTGAGTGAGTGGATATTTTATTCGCGGA
ATTTTGCATTTTATGAGGGGCAGGGGATGCCCGGGAGGGTTTTTAGGAAT
ATGGCGTGTGAGTACAGGGAGGATGTGGCAAGTTTGGATTCCACCCTGTT
TTTGAGGAGGGATGGGGCGCAGATGGTGGGCGTGCATGCTTACTTTGGGG
TGCCGGTGGTCCAGGATGAGATGGTCTTTGTGTTGGTCTTTTATTCGAGC
CATGCGAACTCCCGGTATATCACCCATGAAGTGCTTGAGTTCATTAAGCA
CACTGTGGCGTCGTGGAGGGTGGTGTTCGCTCCGCCCTCTATGCCTGCTC
TTGCTGCTGCTGCTGCTTGTAGTGGTGGTGGTGGCTCGAATGGGGCAGGT
GGGGCGGTCGCGTCCCCTCCTAGGGAGGTGCCAGAGTATTTGTCGTAATG
CTGAGGGGAGGTGGCGAAGGATGGGTAGAGATGGGAGGGAGAGAGGGAAA
GAAGCAGGAAGAATGGAAGTCAAACGAGATGTGGAGAGCGACTTTCTGTG
CAGGTGAAGGTGAAGAAGGTGGAAACAGAATATCTGAAGCTGGCCTTTTC
GTTTTTGGTCGTGGAGAAGGGAGGGGGAGATAAAAAAAGGAGTTGAGTAC
ACTATTACTATACAGTAAATGTAAATATTTACACGCAAACACAAACAATT
AATCATTATGTGCAACGTAATAGCGAAACAGTGGGTAGAAAGGTTAGCAG
AGGAGAAAGCAAGAAACGAGATCGAAATTTTGACGTCCAAGACTCAGTGA
GAAGGAGAGACGGAGGGAGGGACGGAGGGACGGAG
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Coding sequence (CDS) from alignment at scaffold_21:309146..310480-

>mRNA_7779 ID=mRNA_7779|Name=jgi.p|Nanoce1779_2|600002|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_21:309146..310480- (Nannochloropsis oceanica)
ATGGAGGTCGAAAGACCGTGGGAAGACGAGGGCATGCGCGACGAAAAATG
GGTCAATACCATTACCGTTTCTAGTGCTAAGAGAGGCTCGGTCGGAGGAA
GAAATGGTAATAGAGTAGAATCAGATTCATATGGAATGTCAGTGAGGGAG
GGAGGGAGCGCTTGGGCAGATTCCGATGGGTTGGAGTGGGCGGCAGACGA
GGAGATAAGCCAGGCCCTTCAAGCGCTCGCACGGGCACCTTCCCCTCCTT
TGGAGAACAACGCGTGTGGCGGGGCATACGATTTGTGCTACTCCCCCCCG
ACTACGTTTGAAGAAACGATGCGTTCTTTCCTTCAGGAGCTGCCCGCCCA
GGCTTTCCAGTGCACGGACGTGTGGGTGCCATCAAGGGACCCGAACTCGG
ACCGCATTAGTTTGCAGTTTGGCGGAGGGGTGGCTCTGAGGGGGAGTTTG
AGTGAGTGGATATTTTATTCGCGGAATTTTGCATTTTATGAGGGGCAGGG
GATGCCCGGGAGGGTTTTTAGGAATATGGCGTGTGAGTACAGGGAGGATG
TGGCAAGTTTGGATTCCACCCTGTTTTTGAGGAGGGATGGGGCGCAGATG
GTGGGCGTGCATGCTTACTTTGGGGTGCCGGTGGTCCAGGATGAGATGGT
CTTTGTGTTGGTCTTTTATTCGAGCCATGCGAACTCCCGGTATATCACCC
ATGAAGTGCTTGAGTTCATTAAGCACACTGTGGCGTCGTGGAGGGTGGTG
TTCGCTCCGCCCTCTATGCCTGCTCTTGCTGCTGCTGCTGCTTGTAGTGG
TGGTGGTGGCTCGAATGGGGCAGGTGGGGCGGTCGCGTCCCCTCCTAGGG
AGGTGCCAGAGTATTTGTCGTAA
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Synonyms
Publications