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Properties
| Property Name | Value |
|---|
| TranscriptId | 600079 |
| Track | FilteredModels2 |
| ProteinId | 599993 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:304438..308049 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7777 ID=mRNA_7777|Name=jgi.p|Nanoce1779_2|599993|organism=Nannochloropsis oceanica|type=mRNA|length=3021bp
CCCCAAAGCACCTCCTGTGCGACATACAACCCCGGCATCGGCGCCCCCAC
AGGAGTCAATTGATACACATACACAGGAGTCGATAAACCCTCCCTGAAAG
TTCTTGGTAGCCTCACGAGCGCTGATCCATCCTCTCCTAGCCTGACGCTC
CCCAGATAGGTAGAAGTGGAGGGACCTACCCCTGAAGGGGAGATTGACTT
GATCACACCGCACATGTCGGAAGCAGGTTGGCGCAATATGTACCGTTTGA
AGAAGAAGTCCGAGAAGAGAATGAGCATGGAGCCCATGTATACCATCATC
AAGATCTTGGAGAAGTCAGGCGAACCACACGAGGGGCCTTCGTAAAAGGC
AAGGGAGGACTGGAGGAAGATGGAGGCGAATTGGAGAAGTTGGAGGGAGG
CGAGGTGCGAAGACCACCATGAAGGGAGGCCAAGGCAGGTGCAGAAGTAA
TGCAGGTACACGGCAACGTGGCATAGGGAGTTGGCCAGAATGGGGAAATA
CATGTCCCCGCCAAAATCAAAGGGCATAAGCGAGCCAACAATGACGGTGA
TGGAAGCGTGATGGAAGAGGTGAAGAAAGGTGACTTGACGAAAGCTGCGC
CGCAGGATGAAGAAATAGGTGTCGAGGTACTCGAAATACTTTTGCAAGTA
GTACACCGCAAAGACAGACGCCAAACCCGGGTCTCCGAGGGCGAGCCGAT
TACAAATAAATGATGACGTCGTAGTTGGTTGTTGTAGGTTCGAATCCTCA
GGTTGTGGTAGCGGCACCGATGACGAGGAGCAAGGGAAAAGCTTATAACG
CAGGATAGCGAGCGAGACGTAAGAGGACACCAATACGTTAATTAGGTTGT
ATATGGTAAGGACCTGCTTCAGGTGGTAGGGTGATTCCCGCCGGCGCATG
TGAACGTATAGGCCACAAGTCAAGCACAAGTATCCCAAATTCATCAAAAC
CAAGAGATACTCTTGCGTTTCGGTCGAGTAGAGATCGATGAAGGGTGTGC
TTGGTTGAAAGCTGTGGGCGACCCGGGACTCGTAAGCAGCCTGTGCCACG
TCAAAGCTTGCCAGGGCACGATGATAGAGTAAGCCGACGAACGGCGCGGT
CAGAATGCCACCCAACGCGAATGGGAATATGGGAATCATCTTGTGTCGTG
TGTGGGGATGAAGCTACTGGAAGCCGACTTAGAAAAGCAGTCACACTACG
GCAAGTCAACAAGCGCGAATGGAGGCTTCGCCGCACGTAAAGTGGCGGCC
TTCAAACAGGGGCGGAGGCACGCCAAGTCGCACGTCGCAAATGCAGGCGC
ACCTGTCAGTACGGGTAAAACAAGGCTGGAGGAAAGAGTTAAGATGCGTA
AGAGTGAATAAGGATGGAATCATGCAGAGAAAGGGCATCACTTTTTTTTT
ACTTTTTTCCCCACGGTGCTCTCACCAACTTGATGTGTTATGTGGTGAGA
TCGATACGGGCGTTAAGGCTTGGTCGGATCGAAAAATGAAAGCGCTTGTT
CAAATAGACGTGTGTACGCCCATCTTTAGAAAGGGATGGGACGTGAATGT
ACAAATTGGGCTGTATTGCTTACTTGTCGCGTGCGGTCTGCATGACCTCC
CCAACCTCAAGGGACTCTCGGCCCCTACTATGCGCCCCCATCTTAAGCGC
TACACGGTCTTACACTGTAGAGACAAGCACAAACATAGAGCACAGGCGAA
ATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTCAT
TTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCCCC
AGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCACAA
ACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCACA
GCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAGCT
GGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGAAT
GCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTTTC
TGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGTAC
CTGGCATGATTCGTGAAAAGGTACTGACGTTCGCACCACCTACACTCGCT
TTCCAAGGGGACAGTCGCCGGAGCTTGGATGAGATCCGAGCATTTTGTGC
CAAGTACGATGAGTATCTTCATTTGATAAATAATAATTGCTATACGTTCT
CGGATCGCCTGCAAAGATTTCTTATACGAGACGACGATAGATGGGCATGC
GCATCGGAAAACATCCGGGCTAGCGCTGTGTCCCAAAGTCTCGACGTAAA
TGGCAATGTTGTGGTGTCTGGTAATGAAAATACATTTGGTCTAATGAAGA
CCACAAGCTCCGACGTGACTGTTCTATCCAGGATCAATAAATCCAGGGGT
GTATGTGAGATCGTTAGTACAGGATATCACGCGAAGTTGATCCTTTTGGG
AACCACAGAAACGAAAAAATATTCATTCCCCGTTACGAACAGCATCAAGG
ATTCTTTTATGAGATTCTAACGTCTTCTCCCATCATCATCTAGTACTGAT
TCAGATAATTTGGTCGTGGAGATCTCTCATAGCTATGGCGTGGGTTATGA
TTCTCGCACCCTATTGAGATTCGTTAAATTGGACGATTTACAAAGAACCA
TGAAATGCATACTCAATATTTATGGGTGGAATTTCAATCCAGCAACCATT
TTATCCAGGGATGAACGCCTGGACCCGATTGCGATGTCCACGTTTCTCCA
CCGTCAATCGACGTATGGACATTTCCGTCGTGGACGACTGCGACTGCGAT
TTCCTCGTCATTGGAAGAGTCCACGCTTATCCTAGAGCGGGATGGCGTCA
TCGTCCCGCGAAAACGCCAGTGGCCTGATGCCGGGAGCTTCCCCGTCATG
CGGGGCGGGCTTATTTTGGTGCTCAAGATATGATAGAAGGAGATGTCACT
ATGCCGGTGACAAGGCTCGTA back to topprotein sequence of jgi.p|Nanoce1779_2|599993 >mRNA_7777-protein ID=mRNA_7777-protein|Name=jgi.p|Nanoce1779_2|599993|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MRKVRPRPLPSRSSLVICVCLLTCSSPASAFKPQPLRTPSTAAAAHGRPQ
TTHTRAESVDIREPVSQPWRVSTARYPLIGWPSWGPKLHEAVIVERRDAN
AAAAGPAYLLFDFIPVSATKISTVTTLFRGQTVPGMIREKVLTFAPPTLA
FQGDSRRSLDEIRAFCAKYDEYLHLINNNCYTFSDRLQRFLIRDDDRWAC
ASENIRASAVSQSLDVNGNVVVSGNENTFGLMKTTSSDVTVLSRINKSRG
VCEIVSTGYHAKLILLGTTETKKYSFPVTNSIKDSFMRF* back to topmRNA from alignment at scaffold_21:304438..308049- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7777 ID=mRNA_7777|Name=jgi.p|Nanoce1779_2|599993|organism=Nannochloropsis oceanica|type=mRNA|length=3612bp|location=Sequence derived from alignment at scaffold_21:304438..308049- (Nannochloropsis oceanica)
CCCCAAAGCACCTCCTGTGCGACATACAACCCCGGCATCGGCGCCCCCAC
AGGAGTCAATTGATACACATACACAGGAGTCGATAAACCCTCCCTGAAAG
TTCTTGGTAGCCTCACGAGCGCTGATCCATCCTCTCCTAGCCTGACGCTC
CCCAGATAGGTAGAAGTGGAGGGACCTACCCCTGAAGGGGAGATTGACTT
GATCACACCGCACATGTCGGAAGCAGGTTGGCGCAATATGTACCGTTTGA
AGAAGAAGTCCGAGAAGAGAATGAGCATGGAGCCCATGTATACCATCATC
AAGATCTTGGAGAAGTCAGGCGAACCACACGAGGGGCCTTCGTAAAAGGC
AAGGGAGGACTGGAGGAAGATGGAGGCGAATTGGAGAAGTTGGAGGGAGG
CGAGGTGCGAAGACCACCATGAAGGGAGGCCAAGGCAGGTGCAGAAGTAA
TGCAGGTACACGGCAACGTGGCATAGGGAGTTGGCCAGAATGGGGAAATA
CCTAAAGGGCGAAAGAAGGACGGAGGAAGGAACGGACGGGAGAGAGGAAT
GGAGAGACTTGAGAGTGGGGGCAATGCCAGGTCTTTTTTATTGCGATCTG
TGTACCTATGATATGCAGTTTTGATGTGCAGACGATGTGAAGTTTGTCTT
ATCCTTCTCTTTACTCGCCCAACTCTCTCCCCCCTTTCCTTACATGTCCC
CGCCAAAATCAAAGGGCATAAGCGAGCCAACAATGACGGTGATGGAAGCG
TGATGGAAGAGGTGAAGAAAGGTGACTTGACGAAAGCTGCGCCGCAGGAT
GAAGAAATAGGTGTCGAGGTACTCGAAATACTGTTGAAGGGAGGGAGGGG
AGGGATGGAGGGAGGGAGACAAGAGACAGGAGACAGGAGACAGGAGACAG
GAGACAAAGGAGATATGAATTGACGTATGGACAAACATTAGAGAGAAAAA
GGTAAGTGCGAGACAAATCAGACGATAGGAAAAACCATTCAACCACTTTT
CACACAGATGCACGATGCTAATAAACAAACCAATTCCTCAGGCGCTCTAA
ATACTTACGCACCTTTTGCAAGTAGTACACCGCAAAGACAGACGCCAAAC
CCGGGTCTCCGAGGGCGAGCCGATTACAAATAAATGATGACGTCGTAGTT
GGTTGTTGTAGGTTCGAATCCTCAGGTTGTGGTAGCGGCACCGATGACGA
GGAGCAAGGGAAAAGCTTATAACGCAGGATAGCGAGCGAGACGTAAGAGG
ACACCAATACGTTAATTAGGTTGTATATGGTAAGGACCTGCTTCAGGTGG
TAGGGTGATTCCCGCCGGCGCATGTGAACGTATAGGCCACAAGTCAAGCA
CAAGTATCCCAAATTCATCAAAACCAAGAGATACTCTTGCGTTTCGGTCG
AGTAGAGATCGATGAAGGGTGTGCTTGGTTGAAAGCTGTGGGCGACCCGG
GACTCGTAAGCAGCCTGTGCCACGTCAAAGCTTGCCAGGGCACGATGATA
GAGTAAGCCGACGAACGGCGCGGTCAGAATGCCACCCAACGCGAATGGGA
ATATGGGAATCATCTTGTGTCGTGTGTGGGGATGAAGCTACTGGAAGCCG
ACTTAGAAAAGCAGTCACACTACGGCAAGTCAACAAGCGCGAATGGAGGC
TTCGCCGCACGTAAAGTGGCGGCCTTCAAACAGGGGCGGAGGCACGCCAA
GTCGCACGTCGCAAATGCAGGCGCACCTGTCAGTACGGGTAAAACAAGGC
TGGAGGAAAGAGTTAAGATGCGTAAGAGTGAATAAGGATGGAATCATGCA
GAGAAAGGGCATCACTTTTTTTTTACTTTTTTCCCCACGGTGCTCTCACC
AACTTGATGTGTTATGTGGTGAGATCGATACGGGCGTTAAGGCTTGGTCG
GATCGAAAAATGAAAGCGCTTGTTCAAATAGACGTGTGTACGCCCATCTT
TAGAAAGGGATGGGACGTGAATGTACAAATTGGGCTGTATTGCTTACTTG
TCGCGTGCGGTCTGCATGACCTCCCCAACCTCAAGGGACTCTCGGCCCCT
ACTATGCGCCCCCATCTTAAGCGCTACACGGTCTTACACTGTAGAGACAA
GCACAAACATAGAGCACAGGCGAAATGCGAAAAGTAAGACCGAGGCCACT
TCCATCTCGTAGTAGCCTTGTCATTTGCGTGTGTTTGCTAACATGCAGCA
GCCCCGCCTCTGCCTTCAAGCCCCAGCCTCTGCGCACCCCGTCGACGGCA
GCAGCAGCACACGGACGACCACAAACAACACATACTCGCGCTGAAAGCGT
AGATATTCGAGAGCCGGTTTCACAGCCCTGGCGCGTCAGTACGGCACGCT
ACCCGCTGATTGGTTGGCCGAGCTGGGGTCCCAAGCTGCACGAAGCCGTC
ATCGTGGAACGCCGAGACGCGAATGCTGCCGCGGCGGGGCCAGCCTACCT
GCTTTTTGACTTCATTCCCGTTTCTGCTACAAAGATCTCAACAGTCACAA
CCTTATTCCGGGGGCAGACAGTACCTGGCATGATTCGTGAAAAGGTGAGT
GAGCGCATGCTGCTAGTGCTAGAAAAGGGCACCATGCAAACGCCTACATA
TGAGGGCTGGTGCTGGAGCACTGAAGGAGGGCATGTCTTCAGTATGGAAT
GGCCATTTCAGAGAAAGGTTGTGACGTCTTCTCACTCAATCTCTTCCCTT
ACGACAAACAGGTACTGACGTTCGCACCACCTACACTCGCTTTCCAAGGG
GACAGTCGCCGGAGCTTGGATGAGATCCGAGCATTTTGTGCCAAGTACGA
TGAGTATCTTCATTTGATAAATAATAATTGCTATACGTTCTCGGATCGCC
TGCAAAGATTTCTTATACGAGACGACGATAGATGGGCATGCGCATCGGAA
AACATCCGGGCTAGCGCTGTGTCCCAAAGTCTCGACGTAAATGGCAATGT
TGTGGTGTCTGGTAATGAAAATACATTTGGTCTAATGAAGACCACAAGCT
CCGACGTGACTGTTCTATCCAGGATCAATAAATCCAGGGGTGTATGTGAG
ATCGTTAGTACAGGATATCACGCGAAGTTGATCCTTTTGGGAACCACAGA
AACGAAAAAATATTCATTCCCCGTTACGAACAGCATCAAGGATTCTTTTA
TGAGATTCTAACGTCTTCTCCCATCATCATCTAGTACTGATTCAGATAAT
TTGGTCGTGGAGATCTCTCATAGCTATGGCGTGGGTTATGATTCTCGCAC
CCTATTGAGATTCGTTAAATTGGACGATTTACAAAGAACCATGAAATGCA
TACTCAATATTTATGGGTGGAATTTCAATCCAGCAACCATTTTATCCAGG
GATGAACGCCTGGACCCGATTGCGATGTCCACGTTTCTCCACCGTCAATC
GACGTATGGACATTTCCGTCGTGGACGACTGCGACTGCGATTTCCTCGTC
ATTGGAAGAGTCCACGCTTATCCTAGAGCGGGATGGCGTCATCGTCCCGC
GAAAACGCCAGTGGCCTGATGCCGGGAGCTTCCCCGTCATGCGGGGCGGG
CTTATTTTGGTGCTCAAGATATGATAGAAGGAGATGTCACTATGCCGGTG
ACAAGGCTCGTA back to topCoding sequence (CDS) from alignment at scaffold_21:304438..308049- >mRNA_7777 ID=mRNA_7777|Name=jgi.p|Nanoce1779_2|599993|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_21:304438..308049- (Nannochloropsis oceanica)
AGGTACTGACGTTCGCACCACCTACACTCGCTTTCCAAGGGGACAGTCGC
CGGAGCTTGGATGAGATCCGAGCATTTTGTGCCAAGTACGATGAGTATCT
TCATTTGATAAATAATAATTGCTATACGTTCTCGGATCGCCTGCAAAGAT
TTCTTATACGAGACGACGATAGATGGGCATGCGCATCGGAAAACATCCGG
GCTAGCGCTGTGTCCCAAAGTCTCGACGTAAATGGCAATGTTGTGGTGTC
TGGTAATGAAAATACATTTGGTCTAATGAAGACCACAAGCTCCGACGTGA
CTGTTCTATCCAGGATCAATAAATCCAGGGGTGTATGTGAGATCGTTAGT
ACAGGATATCACGCGAAGTTGATCCTTTTGGGAACCACAGAAACGAAAAA
ATATTCATTCCCCGTTACGAACAGCATCAAGGATTCTTTTATGAGATTCT
AAATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTC
ATTTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCC
CCAGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCAC
AAACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCA
CAGCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAG
CTGGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGA
ATGCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTT
TCTGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGT
ACCTGGCATGATTCGTGAAAAGGTACTGACGTTCGCACCACCTACACTCG
CTTTCCAAGGGGACAGTCGCCGGAGCTTGGATGAGATCCGAGCATTTTGT
GCCAAGTACGATGAGTATCTTCATTTGATAAATAATAATTGCTATACGTT
CTCGGATCGCCTGCAAAGATTTCTTATACGAGACGACGATAGATGGGCAT
GCGCATCGGAAAACATCCGGGCTAGCGCTGTGTCCCAAAGTCTCGACGTA
AATGGCAATGTTGTGGTGTCTGGTAATGAAAATACATTTGGTCTAATGAA
GACCACAAGCTCCGACGTGACTGTTCTATCCAGGATCAATAAATCCAGGG
GTGTATGTGAGATCGTTAGTACAGGATATCACGCGAAGTTGATCCTTTTG
GGAACCACAGAAACGAAAAAATATTCATTCCCCGTTACGAACAGCATCAA
GGATTCTTTTATGAGATTCTAAATGCGAAAAGTAAGACCGAGGCCACTTC
CATCTCGTAGTAGCCTTGTCATTTGCGTGTGTTTGCTAACATGCAGCAGC
CCCGCCTCTGCCTTCAAGCCCCAGCCTCTGCGCACCCCGTCGACGGCAGC
AGCAGCACACGGACGACCACAAACAACACATACTCGCGCTGAAAGCGTAG
ATATTCGAGAGCCGGTTTCACAGCCCTGGCGCGTCAGTACGGCACGCTAC
CCGCTGATTGGTTGGCCGAGCTGGGGTCCCAAGCTGCACGAAGCCGTCAT
CGTGGAACGCCGAGACGCGAATGCTGCCGCGGCGGGGCCAGCCTACCTGC
TTTTTGACTTCATTCCCGTTTCTGCTACAAAGATCTCAACAGTCACAACC
TTATTCCGGGGGCAGACAGTACCTGGCATGATTCGTGAAA back to top
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