jgi.p|Nanoce1779_2|599970, mRNA_7773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599970
Unique NamemRNA_7773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1269
Alignment locationscaffold_21:289404..290772 +

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Properties
Property NameValue
TranscriptId600056
TrackFilteredModels2
ProteinId599970
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:289404..290772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599970gene_7773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599970mRNA_7773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7773CDS_7773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7773 ID=mRNA_7773|Name=jgi.p|Nanoce1779_2|599970|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
CAACAGAGAACCTCCTGCCCCATCAACCTCGCCGAGCAGCAAAGATGGCT
CACTTTCTGCCGCTTCTGGCCCTCCTGGCCTTGGTCTTATTTCTCCTCCC
CAACGCCGCTGCTCTCTGCTTCCGTCCACGCAGCGGCCGCCGCATCGAAG
TCAATGTTTCCTCGAACACGCAGTCCGACAGCAACGATGCTAACACCACG
ACAACAGCGGGTGAGGAGGGTCCAGCCAGCAACACCACGCTGCCAAAGGA
ATGCGAGCCCGTTCCCGATGAGTGCGTGGAAGACATAGGTGCTTTGGCTG
ACTCTGCACATAACGATTCTATGGCCGACACTGACAAGGACACCGCTCTG
CAGAACTTCTGCGTCACCGACTGCGGCAAGACCTACACGGACCATGTGGG
ATCCATCCTTCAAGGCAAGTGCCTGCAGCCCTTTCCTTCCCGCATGAACG
TCTCAGGTCGCCCCAACGTTAGAGTTATCGTGCGAGCGCCACCAGGCGTA
GTGGTGGTTGTGGGTCAACGTGGCGGCTCAGGCCGATCCTCTGCTCGGCC
CATGTACAACGACGAGAATGAAAACGATGACGACAAGGACAACAAGTACG
ACGACGATGACGAGGAGGAGGAGGAGAACGATGACGACGACGACGTTAAC
AACGATAGCCAAGCCACCACGAGCAGCAGTGGGTCCAACAAGAAAAGGCC
GACGGAGCAAGAGATGCTGGACGCTTTTCACAAAGACCGTCCTGGCACGG
CGCTGGGGTGCATACGGGCGTATGATGGTGAGATGTGTGCGGCTAAGAAG
GGATGTGACTTCTTCAATTCTTGTTGTTATGCTAGTTGGTTCCGTCTCGG
CAACTACGCAGGGTACCCTATGTCATCCGGCACCGTTCGCGCCGTTGAGT
ATTTCTGTCCTGGTAGCTCGCGTTATCTTAATTTCGACGGATGTACTTAG
AGAGGTTCATGTAAAAAGGAGAGTAGGGTGTTGATTGGCCAGGAGCAGCG
CATGGCGCCGAGGAAAGACATGGGCTTGGGCGGCAAGACATACCATAGCT
TGTTCTGCTCCAAAGCATGGAAATGACATGAATCAGCGATGCAGGAGGGC
AGGCCAAGCTTATAGTGAACATGTTAATACATTCCCCCAAAATAACGAAA
GGGATAGAGTAATATATCAGAAGAAAGAATGGAATAGGATGGAGACGTGA
AACAAGCACAAAAAGACACCCGGAGAAGGATGGAGACGTGAAACAAGCAC
AAAAAGACACCCGGAGAAG
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protein sequence of jgi.p|Nanoce1779_2|599970

>mRNA_7773-protein ID=mRNA_7773-protein|Name=jgi.p|Nanoce1779_2|599970|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MAHFLPLLALLALVLFLLPNAAALCFRPRSGRRIEVNVSSNTQSDSNDAN
TTTTAGEEGPASNTTLPKECEPVPDECVEDIGALADSAHNDSMADTDKDT
ALQNFCVTDCGKTYTDHVGSILQGKCLQPFPSRMNVSGRPNVRVIVRAPP
GVVVVVGQRGGSGRSSARPMYNDENENDDDKDNKYDDDDEEEEENDDDDD
VNNDSQATTSSSGSNKKRPTEQEMLDAFHKDRPGTALGCIRAYDGEMCAA
KKGCDFFNSCCYASWFRLGNYAGYPMSSGTVRAVEYFCPGSSRYLNFDGC
T*
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mRNA from alignment at scaffold_21:289404..290772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7773 ID=mRNA_7773|Name=jgi.p|Nanoce1779_2|599970|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_21:289404..290772+ (Nannochloropsis oceanica)
CAACAGAGAACCTCCTGCCCCATCAACCTCGCCGAGCAGCAAAGATGGCT
CACTTTCTGCCGCTTCTGGCCCTCCTGGCCTTGGTCTTATTTCTCCTCCC
CAACGCCGCTGCTCTCTGCTTCCGTCCACGCAGCGGCCGCCGCATCGAAG
TCAATGTTTCCTCGAACACGCAGTCCGACAGCAACGATGCTAACACCACG
ACAACAGCGGGTGAGGAGGGTCCAGCCAGCAACACCACGCTGCCAAAGGA
ATGCGAGCCCGTTCCCGATGAGTGCGTGGAAGACATAGGTGCTTTGGCTG
ACTCTGCACATAACGATTCTATGGCCGACACTGACAAGGACACCGCTCTG
CAGAACTTCTGCGTCACCGACTGCGGCAAGACGTACGTAAGGAGAGAGTG
GAGTGGGACGGTACACTATGTCAATCCGTAGGGTAATGGTACACAGGAAT
TGCTCATTCCAATCATCTTCATATTATCACAGCTACACGGACCATGTGGG
ATCCATCCTTCAAGGCAAGTGCCTGCAGCCCTTTCCTTCCCGCATGAACG
TCTCAGGTCGCCCCAACGTTAGAGTTATCGTGCGAGCGCCACCAGGCGTA
GTGGTGGTTGTGGGTCAACGTGGCGGCTCAGGCCGATCCTCTGCTCGGCC
CATGTACAACGACGAGAATGAAAACGATGACGACAAGGACAACAAGTACG
ACGACGATGACGAGGAGGAGGAGGAGAACGATGACGACGACGACGTTAAC
AACGATAGCCAAGCCACCACGAGCAGCAGTGGGTCCAACAAGAAAAGGCC
GACGGAGCAAGAGATGCTGGACGCTTTTCACAAAGACCGTCCTGGCACGG
CGCTGGGGTGCATACGGGCGTATGATGGTGAGATGTGTGCGGCTAAGAAG
GGATGTGACTTCTTCAATTCTTGTTGTTATGCTAGTTGGTTCCGTCTCGG
CAACTACGCAGGGTACCCTATGTCATCCGGCACCGTTCGCGCCGTTGAGT
ATTTCTGTCCTGGTAGCTCGCGTTATCTTAATTTCGACGGATGTACTTAG
AGAGGTTCATGTAAAAAGGAGAGTAGGGTGTTGATTGGCCAGGAGCAGCG
CATGGCGCCGAGGAAAGACATGGGCTTGGGCGGCAAGACATACCATAGCT
TGTTCTGCTCCAAAGCATGGAAATGACATGAATCAGCGATGCAGGAGGGC
AGGCCAAGCTTATAGTGAACATGTTAATACATTCCCCCAAAATAACGAAA
GGGATAGAGTAATATATCAGAAGAAAGAATGGAATAGGATGGAGACGTGA
AACAAGCACAAAAAGACACCCGGAGAAGGATGGAGACGTGAAACAAGCAC
AAAAAGACACCCGGAGAAG
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Coding sequence (CDS) from alignment at scaffold_21:289404..290772+

>mRNA_7773 ID=mRNA_7773|Name=jgi.p|Nanoce1779_2|599970|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_21:289404..290772+ (Nannochloropsis oceanica)
ATGGCTCACTTTCTGCCGCTTCTGGCCCTCCTGGCCTTGGTCTTATTTCT
CCTCCCCAACGCCGCTGCTCTCTGCTTCCGTCCACGCAGCGGCCGCCGCA
TCGAAGTCAATGTTTCCTCGAACACGCAGTCCGACAGCAACGATGCTAAC
ACCACGACAACAGCGGGTGAGGAGGGTCCAGCCAGCAACACCACGCTGCC
AAAGGAATGCGAGCCCGTTCCCGATGAGTGCGTGGAAGACATAGGTGCTT
TGGCTGACTCTGCACATAACGATTCTATGGCCGACACTGACAAGGACACC
GCTCTGCAGAACTTCTGCGTCACCGACTGCGGCAAGACCTACACGGACCA
TGTGGGATCCATCCTTCAAGGCAAGTGCCTGCAGCCCTTTCCTTCCCGCA
TGAACGTCTCAGGTCGCCCCAACGTTAGAGTTATCGTGCGAGCGCCACCA
GGCGTAGTGGTGGTTGTGGGTCAACGTGGCGGCTCAGGCCGATCCTCTGC
TCGGCCCATGTACAACGACGAGAATGAAAACGATGACGACAAGGACAACA
AGTACGACGACGATGACGAGGAGGAGGAGGAGAACGATGACGACGACGAC
GTTAACAACGATAGCCAAGCCACCACGAGCAGCAGTGGGTCCAACAAGAA
AAGGCCGACGGAGCAAGAGATGCTGGACGCTTTTCACAAAGACCGTCCTG
GCACGGCGCTGGGGTGCATACGGGCGTATGATGGTGAGATGTGTGCGGCT
AAGAAGGGATGTGACTTCTTCAATTCTTGTTGTTATGCTAGTTGGTTCCG
TCTCGGCAACTACGCAGGGTACCCTATGTCATCCGGCACCGTTCGCGCCG
TTGAGTATTTCTGTCCTGGTAGCTCGCGTTATCTTAATTTCGACGGATGT
ACTTAGATGGCTCACTTTCTGCCGCTTCTGGCCCTCCTGGCCTTGGTCTT
ATTTCTCCTCCCCAACGCCGCTGCTCTCTGCTTCCGTCCACGCAGCGGCC
GCCGCATCGAAGTCAATGTTTCCTCGAACACGCAGTCCGACAGCAACGAT
GCTAACACCACGACAACAGCGGGTGAGGAGGGTCCAGCCAGCAACACCAC
GCTGCCAAAGGAATGCGAGCCCGTTCCCGATGAGTGCGTGGAAGACATAG
GTGCTTTGGCTGACTCTGCACATAACGATTCTATGGCCGACACTGACAAG
GACACCGCTCTGCAGAACTTCTGCGTCACCGACTGCGGCAAGACCTACAC
GGACCATGTGGGATCCATCCTTCAAGGCAAGTGCCTGCAGCCCTTTCCTT
CCCGCATGAACGTCTCAGGTCGCCCCAACGTTAGAGTTATCGTGCGAGCG
CCACCAGGCGTAGTGGTGGTTGTGGGTCAACGTGGCGGCTCAGGCCGATC
CTCTGCTCGGCCCATGTACAACGACGAGAATGAAAACGATGACGACAAGG
ACAACAAGTACGACGACGATGACGAGGAGGAGGAGGAGAACGATGACGAC
GACGACGTTAACAACGATAGCCAAGCCACCACGAGCAGCAGTGGGTCCAA
CAAGAAAAGGCCGACGGAGCAAGAGATGCTGGACGCTTTTCACAAAGACC
GTCCTGGCACGGCGCTGGGGTGCATACGGGCGTATGATGGTGAGATGTGT
GCGGCTAAGAAGGGATGTGACTTCTTCAATTCTTGTTGTTATGCTAGTTG
GTTCCGTCTCGGCAACTACGCAGGGTACCCTATGTCATCCGGCACCGTTC
GCGCCGTTGAGTATTTCTGTCCTGGTAGCTCGCGTTATCTTAATTTCGAC
GGATGTACTTAG
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Synonyms
Publications