jgi.p|Nanoce1779_2|599968, mRNA_7772 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599968
Unique NamemRNA_7772
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length435
Alignment locationscaffold_21:288469..288903 +

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Properties
Property NameValue
TranscriptId600054
TrackFilteredModels2
ProteinId599968
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:288469..288903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599968gene_7772Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599968mRNA_7772-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7772CDS_7772Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7772 ID=mRNA_7772|Name=jgi.p|Nanoce1779_2|599968|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
GGCATGCCTTTAGAATGTGTTGCTTTCTAATTTCTTTTCACTACGCTTTG
TCCTTCTTCTGCTTCATCTTGCGTTTCTTCTCGGGGCTGCTGCTCAAGGC
AACAACCTCAGCTGCAGCTGCTGCTGCGGCCGAGTTCGGTGCTAATTCTA
GTTTGTTCAAAGTTGTGTCTTCTATTCTATCCTGTGCCTTGTCCTCTTCT
GCGTCTCCGCAATCACTTCTCTCCACGCAGGAGTCGCGGACTATTTGCAG
CTGGTGCAGCACGTCGGACGGCAACTGTGGCAAAAGTTAATTCAGAAATT
GATAAGAAATTGTCAGTCCAATTGATTTTTACGCTCTCTGGTTCAAATAA
AGTTTGTCGACGACCTGATGTGTTGTCGTCGAGGTTAGCCTCTTGCAGTC
CTCCTCCAAGAACACAGAGATGCACACCATTCCAC
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protein sequence of jgi.p|Nanoce1779_2|599968

>mRNA_7772-protein ID=mRNA_7772-protein|Name=jgi.p|Nanoce1779_2|599968|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MCCFLISFHYALSFFCFILRFFSGLLLKATTSAAAAAAAEFGANSSLFKV
VSSILSCALSSSASPQSLLSTQESRTICSWCSTSDGNCGKS*
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mRNA from alignment at scaffold_21:288469..288903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7772 ID=mRNA_7772|Name=jgi.p|Nanoce1779_2|599968|organism=Nannochloropsis oceanica|type=mRNA|length=435bp|location=Sequence derived from alignment at scaffold_21:288469..288903+ (Nannochloropsis oceanica)
GGCATGCCTTTAGAATGTGTTGCTTTCTAATTTCTTTTCACTACGCTTTG
TCCTTCTTCTGCTTCATCTTGCGTTTCTTCTCGGGGCTGCTGCTCAAGGC
AACAACCTCAGCTGCAGCTGCTGCTGCGGCCGAGTTCGGTGCTAATTCTA
GTTTGTTCAAAGTTGTGTCTTCTATTCTATCCTGTGCCTTGTCCTCTTCT
GCGTCTCCGCAATCACTTCTCTCCACGCAGGAGTCGCGGACTATTTGCAG
CTGGTGCAGCACGTCGGACGGCAACTGTGGCAAAAGTTAATTCAGAAATT
GATAAGAAATTGTCAGTCCAATTGATTTTTACGCTCTCTGGTTCAAATAA
AGTTTGTCGACGACCTGATGTGTTGTCGTCGAGGTTAGCCTCTTGCAGTC
CTCCTCCAAGAACACAGAGATGCACACCATTCCAC
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Coding sequence (CDS) from alignment at scaffold_21:288469..288903+

>mRNA_7772 ID=mRNA_7772|Name=jgi.p|Nanoce1779_2|599968|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_21:288469..288903+ (Nannochloropsis oceanica)
ATGTGTTGCTTTCTAATTTCTTTTCACTACGCTTTGTCCTTCTTCTGCTT
CATCTTGCGTTTCTTCTCGGGGCTGCTGCTCAAGGCAACAACCTCAGCTG
CAGCTGCTGCTGCGGCCGAGTTCGGTGCTAATTCTAGTTTGTTCAAAGTT
GTGTCTTCTATTCTATCCTGTGCCTTGTCCTCTTCTGCGTCTCCGCAATC
ACTTCTCTCCACGCAGGAGTCGCGGACTATTTGCAGCTGGTGCAGCACGT
CGGACGGCAACTGTGGCAAAAGTTAA
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Synonyms
Publications