jgi.p|Nanoce1779_2|626123, mRNA_7771 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626123
Unique Name	mRNA_7771
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2079
Alignment location	scaffold_21:286196..288458 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626209
Track	FilteredModels2
ProteinId	626123

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:286196..288458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626123	gene_7771	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626123	mRNA_7771-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7771	CDS_7771	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:286196..288458+
coding sequence from alignment at scaffold_21:286196..288458+

mRNA sequence

>mRNA_7771 ID=mRNA_7771|Name=jgi.p|Nanoce1779_2|626123|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
ACAGGCAAGAAGTCGCCCCAGCCTTCCCGTCTTTTCCTTTCCGGGCTCGA
TCTTGACGGCACACGACACCATCATGGCCACCAAGGAGGAGCTCGACACG
CTCATCAAGGCCAAAGGCGATGAGATCCGACAGCTCAAGGCTGACAAAGC
GGACAAGGAGGTCATCATGGCGCAAGTGACAGGCTTGAATGAGCTCAAAG
CCCAATACAAACAACTCACCGGCGAAGATTACGGTCCCCCGCCTGCGCCC
AGCAAGAAGAAGGAGTCGAAAAATGACGACTCTGCTGTGGCCGGCGGTCC
TAAAATTGACCCTCGAAAGGCTGCCAAGGAAGCACGTGCCGCAAAGCGCG
CAACCGGTGGCGCAGTTGCCCCCGCACCAGGGTCCTCACGTACCGGTACT
GCTCCCGAAGCTACATCTGCCGCTGCCACTGTCACTACTGTCAGCGAAGA
GAGAGAAAAGTACGGCATCCTGCCTTTGATTCAATCCCAAGTGATGACTA
ACAAGGTCTGGGCACGTATCTCTGACCTCTCCCCCAAGCGGGCCGGGCAA
CGCGTCCTCCTCCGTGGGCGGGTACACACCTCCCGTGCCGTTGGCAAGGG
CGTATTTCTTCTTTTGCGACAAGGCATTGCCACTGTGCAAGCTGTTGTTT
ATCAGGGCGCGAAAGTGAACAAGGGCATGGTGAAATTTGCGGGAGGGGTG
TCGAAGGAATCGATTGTGGATCTAGTGGGCATTTTGACGGCGCCAAGGGA
GCCCGTGGAAAGCGCGACAGCTAAGATGGTCGAATTGCAAGTAGAGGAGA
TGTATGTCGTGAGCGCAGCTGAGAATGTGCTGCCTTTTCAGTTGGAGGAT
GCATCGAGGCCTGATTTGCAGGAAGGGGAGGATAATGTTGAAATGCCCTC
GGTGGGGATGGACAACCGGTTGAATTACAGGTGGATCGACACGAGGACAG
CAGCCAACCAGGCGATCTTCAGGATTCAGCATGGGGTGAGTCAATTATTC
CGAGAATTTTTGTCGGAGCGAGGGTTCATTGAGATCCACACGCCAAAACT
GTTGGGTGGGGCGTCGGAAAGTGGATCGAGCGTGTTTGCGCTGAACTATT
TTGACCAGCAGGCGTGCCTGGCCCAGAGCCCACAGCTGTACAAGCAGATT
GCCTGTGCGTGCGGAGGGTTTGAGAAAGTGTTCGAGATAGGGCCGGTGTT
TCGAGCGGAGAAGAGTTTTACGCATCGGCATCTGTGTGAGTTTACTGGCC
TGGACTTCGAGATGGCCATCCATGAGCATTACTATGAGGTATTGGAATTG
TTTTCAGACCTATTCACATTTATTTTTGACAATTTGTCCTCCCGGTTTGC
GGCAGAGCTGGAGGCAGTGAATAAGCAGCATCCTTTTGAGCCGCTGCAGT
TTTGTCGGCCGTCGTTGAGGTTGTCCTTCGCCGAGGGCGTGGCTCTCTTG
CGGGAGGCCGGGTTCGAAGCTAGTGAGCATGAGGATCTGGACACAGAGAA
AGAAAAAGCATTAGGGAGGATCGTGAAGGAGAAGTACCAGACGGACTTTT
ATATGATGGACCGGTACCCGTTGAGTGTGCGGCCGTTCTACACCATGCCT
TGTCCGGATGACCCTACCCTGAGTAATAGCTATGACATGTTTATTCGGGG
GGAGGAGATCGTGTCCGGGGCGCAGCGGATTCACGATGTGGAATTGTTGG
GGCAACGTATTGATGCGATGGGCGTGCCGAGGGAGACATTGAGGACTTAC
ATTGACGCGTTTAGGCAGGGGGCCTTGCCGCATGGAGGGGGAGGGATTGG
GTTAGAGAGGGTGGTGATGCTATATTTGGGCTTAAAGAACATAAGAAAGA
CGAGCTTGTTTCCCCGCGACCCAAAACGCTTGGCGCCTTAGACAGGGTTG
GGAGGACAAGGAGGGTGGTCAGGGAAGCAGAAGGAGAAGGTGAGGGCTGA
GGCAAATAAGAAAAAAGAGAAGAGAGATGAATGGATAGGAGTGGCGTGCC
ATGTCGGGTTACCTAGTGAAATTGCGCTTCGTCGGAGTTGCGACGCTAGA
AGATAGAACTAAATGAAAGTTGAGCAGTC

protein sequence of jgi.p|Nanoce1779_2|626123

>mRNA_7771-protein ID=mRNA_7771-protein|Name=jgi.p|Nanoce1779_2|626123|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MATKEELDTLIKAKGDEIRQLKADKADKEVIMAQVTGLNELKAQYKQLTG
EDYGPPPAPSKKKESKNDDSAVAGGPKIDPRKAAKEARAAKRATGGAVAP
APGSSRTGTAPEATSAAATVTTVSEEREKYGILPLIQSQVMTNKVWARIS
DLSPKRAGQRVLLRGRVHTSRAVGKGVFLLLRQGIATVQAVVYQGAKVNK
GMVKFAGGVSKESIVDLVGILTAPREPVESATAKMVELQVEEMYVVSAAE
NVLPFQLEDASRPDLQEGEDNVEMPSVGMDNRLNYRWIDTRTAANQAIFR
IQHGVSQLFREFLSERGFIEIHTPKLLGGASESGSSVFALNYFDQQACLA
QSPQLYKQIACACGGFEKVFEIGPVFRAEKSFTHRHLCEFTGLDFEMAIH
EHYYEVLELFSDLFTFIFDNLSSRFAAELEAVNKQHPFEPLQFCRPSLRL
SFAEGVALLREAGFEASEHEDLDTEKEKALGRIVKEKYQTDFYMMDRYPL
SVRPFYTMPCPDDPTLSNSYDMFIRGEEIVSGAQRIHDVELLGQRIDAMG
VPRETLRTYIDAFRQGALPHGGGGIGLERVVMLYLGLKNIRKTSLFPRDP
KRLAP*

mRNA from alignment at scaffold_21:286196..288458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7771 ID=mRNA_7771|Name=jgi.p|Nanoce1779_2|626123|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp|location=Sequence derived from alignment at scaffold_21:286196..288458+ (Nannochloropsis oceanica)
ACAGGCAAGAAGTCGCCCCAGCCTTCCCGTCTTTTCCTTTCCGGGCTCGA
TCTTGACGGCACACGACACCATCATGGCCACCAAGGAGGAGCTCGACACG
CTCATCAAGGCCAAAGGCGATGAGATCCGACAGCTCAAGGCTGACAAAGC
GGACAAGGAGGTCATCATGGCGCAAGTGACAGGCTTGAATGTAAGATTGG
AGCACCATCATTTCCTCTGCCGTCCTTCCTTTCTCCGGACAACTTTTTGG
CAAGGCCAAATCAACCCGCATGCCTACAACCCGCCTTTCATCTCACCCCT
TGCTCTTATTCATCTTGCTGACTGGTCGTCTGCCCTCCTTTCCATCCCCC
CACCACCCGCCCAACCCCCCACAGGAGCTCAAAGCCCAATACAAACAACT
CACCGGCGAAGATTACGGTCCCCCGCCTGCGCCCAGCAAGAAGAAGGAGT
CGAAAAATGACGACTCTGCTGTGGCCGGCGGTCCTAAAATTGACCCTCGA
AAGGCTGCCAAGGAAGCACGTGCCGCAAAGCGCGCAACCGGTGGCGCAGT
TGCCCCCGCACCAGGGTCCTCACGTACCGGTACTGCTCCCGAAGCTACAT
CTGCCGCTGCCACTGTCACTACTGTCAGCGAAGAGAGAGAAAAGTACGGC
ATCCTGCCTTTGATTCAATCCCAAGTGATGACTAACAAGGTCTGGGCACG
TATCTCTGACCTCTCCCCCAAGCGGGCCGGGCAACGCGTCCTCCTCCGTG
GGCGGGTACACACCTCCCGTGCCGTTGGCAAGGGCGTATTTCTTCTTTTG
CGACAAGGCATTGCCACTGTGCAAGCTGTTGTTTATCAGGGCGCGAAAGT
GAACAAGGGCATGGTGAAATTTGCGGGAGGGGTGTCGAAGGAATCGATTG
TGGATCTAGTGGGCATTTTGACGGCGCCAAGGGAGCCCGTGGAAAGCGCG
ACAGCTAAGATGGTCGAATTGCAAGTAGAGGAGATGTATGTCGTGAGCGC
AGCTGAGAATGTGCTGCCTTTTCAGTTGGAGGATGCATCGAGGCCTGATT
TGCAGGAAGGGGAGGATAATGTTGAAATGCCCTCGGTGGGGATGGACAAC
CGGTTGAATTACAGGTGGATCGACACGAGGACAGCAGCCAACCAGGCGAT
CTTCAGGATTCAGCATGGGGTGAGTCAATTATTCCGAGAATTTTTGTCGG
AGCGAGGGTTCATTGAGATCCACACGCCAAAACTGTTGGGTGGGGCGTCG
GAAAGTGGATCGAGCGTGTTTGCGCTGAACTATTTTGACCAGCAGGCGTG
CCTGGCCCAGAGCCCACAGCTGTACAAGCAGATTGCCTGTGCGTGCGGAG
GGTTTGAGAAAGTGTTCGAGATAGGGCCGGTGTTTCGAGCGGAGAAGAGT
TTTACGCATCGGCATCTGTGTGAGTTTACTGGCCTGGACTTCGAGATGGC
CATCCATGAGCATTACTATGAGGTATTGGAATTGTTTTCAGACCTATTCA
CATTTATTTTTGACAATTTGTCCTCCCGGTTTGCGGCAGAGCTGGAGGCA
GTGAATAAGCAGCATCCTTTTGAGCCGCTGCAGTTTTGTCGGCCGTCGTT
GAGGTTGTCCTTCGCCGAGGGCGTGGCTCTCTTGCGGGAGGCCGGGTTCG
AAGCTAGTGAGCATGAGGATCTGGACACAGAGAAAGAAAAAGCATTAGGG
AGGATCGTGAAGGAGAAGTACCAGACGGACTTTTATATGATGGACCGGTA
CCCGTTGAGTGTGCGGCCGTTCTACACCATGCCTTGTCCGGATGACCCTA
CCCTGAGTAATAGCTATGACATGTTTATTCGGGGGGAGGAGATCGTGTCC
GGGGCGCAGCGGATTCACGATGTGGAATTGTTGGGGCAACGTATTGATGC
GATGGGCGTGCCGAGGGAGACATTGAGGACTTACATTGACGCGTTTAGGC
AGGGGGCCTTGCCGCATGGAGGGGGAGGGATTGGGTTAGAGAGGGTGGTG
ATGCTATATTTGGGCTTAAAGAACATAAGAAAGACGAGCTTGTTTCCCCG
CGACCCAAAACGCTTGGCGCCTTAGACAGGGTTGGGAGGACAAGGAGGGT
GGTCAGGGAAGCAGAAGGAGAAGGTGAGGGCTGAGGCAAATAAGAAAAAA
GAGAAGAGAGATGAATGGATAGGAGTGGCGTGCCATGTCGGGTTACCTAG
TGAAATTGCGCTTCGTCGGAGTTGCGACGCTAGAAGATAGAACTAAATGA
AAGTTGAGCAGTC

Coding sequence (CDS) from alignment at scaffold_21:286196..288458+

>mRNA_7771 ID=mRNA_7771|Name=jgi.p|Nanoce1779_2|626123|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_21:286196..288458+ (Nannochloropsis oceanica)
ATGGCCACCAAGGAGGAGCTCGACACGCTCATCAAGGCCAAAGGCGATGA
GATCCGACAGCTCAAGGCTGACAAAGCGGACAAGGAGGTCATCATGGCGC
AAGTGACAGGCTTGAATGAGCTCAAAGCCCAATACAAACAACTCACCGGC
GAAGATTACGGTCCCCCGCCTGCGCCCAGCAAGAAGAAGGAGTCGAAAAA
TGACGACTCTGCTGTGGCCGGCGGTCCTAAAATTGACCCTCGAAAGGCTG
CCAAGGAAGCACGTGCCGCAAAGCGCGCAACCGGTGGCGCAGTTGCCCCC
GCACCAGGGTCCTCACGTACCGGTACTGCTCCCGAAGCTACATCTGCCGC
TGCCACTGTCACTACTGTCAGCGAAGAGAGAGAAAAGTACGGCATCCTGC
CTTTGATTCAATCCCAAGTGATGACTAACAAGGTCTGGGCACGTATCTCT
GACCTCTCCCCCAAGCGGGCCGGGCAACGCGTCCTCCTCCGTGGGCGGGT
ACACACCTCCCGTGCCGTTGGCAAGGGCGTATTTCTTCTTTTGCGACAAG
GCATTGCCACTGTGCAAGCTGTTGTTTATCAGGGCGCGAAAGTGAACAAG
GGCATGGTGAAATTTGCGGGAGGGGTGTCGAAGGAATCGATTGTGGATCT
AGTGGGCATTTTGACGGCGCCAAGGGAGCCCGTGGAAAGCGCGACAGCTA
AGATGGTCGAATTGCAAGTAGAGGAGATGTATGTCGTGAGCGCAGCTGAG
AATGTGCTGCCTTTTCAGTTGGAGGATGCATCGAGGCCTGATTTGCAGGA
AGGGGAGGATAATGTTGAAATGCCCTCGGTGGGGATGGACAACCGGTTGA
ATTACAGGTGGATCGACACGAGGACAGCAGCCAACCAGGCGATCTTCAGG
ATTCAGCATGGGGTGAGTCAATTATTCCGAGAATTTTTGTCGGAGCGAGG
GTTCATTGAGATCCACACGCCAAAACTGTTGGGTGGGGCGTCGGAAAGTG
GATCGAGCGTGTTTGCGCTGAACTATTTTGACCAGCAGGCGTGCCTGGCC
CAGAGCCCACAGCTGTACAAGCAGATTGCCTGTGCGTGCGGAGGGTTTGA
GAAAGTGTTCGAGATAGGGCCGGTGTTTCGAGCGGAGAAGAGTTTTACGC
ATCGGCATCTGTGTGAGTTTACTGGCCTGGACTTCGAGATGGCCATCCAT
GAGCATTACTATGAGGTATTGGAATTGTTTTCAGACCTATTCACATTTAT
TTTTGACAATTTGTCCTCCCGGTTTGCGGCAGAGCTGGAGGCAGTGAATA
AGCAGCATCCTTTTGAGCCGCTGCAGTTTTGTCGGCCGTCGTTGAGGTTG
TCCTTCGCCGAGGGCGTGGCTCTCTTGCGGGAGGCCGGGTTCGAAGCTAG
TGAGCATGAGGATCTGGACACAGAGAAAGAAAAAGCATTAGGGAGGATCG
TGAAGGAGAAGTACCAGACGGACTTTTATATGATGGACCGGTACCCGTTG
AGTGTGCGGCCGTTCTACACCATGCCTTGTCCGGATGACCCTACCCTGAG
TAATAGCTATGACATGTTTATTCGGGGGGAGGAGATCGTGTCCGGGGCGC
AGCGGATTCACGATGTGGAATTGTTGGGGCAACGTATTGATGCGATGGGC
GTGCCGAGGGAGACATTGAGGACTTACATTGACGCGTTTAGGCAGGGGGC
CTTGCCGCATGGAGGGGGAGGGATTGGGTTAGAGAGGGTGGTGATGCTAT
ATTTGGGCTTAAAGAACATAAGAAAGACGAGCTTGTTTCCCCGCGACCCA
AAACGCTTGGCGCCTTAGATGGCCACCAAGGAGGAGCTCGACACGCTCAT
CAAGGCCAAAGGCGATGAGATCCGACAGCTCAAGGCTGACAAAGCGGACA
AGGAGGTCATCATGGCGCAAGTGACAGGCTTGAATGAGCTCAAAGCCCAA
TACAAACAACTCACCGGCGAAGATTACGGTCCCCCGCCTGCGCCCAGCAA
GAAGAAGGAGTCGAAAAATGACGACTCTGCTGTGGCCGGCGGTCCTAAAA
TTGACCCTCGAAAGGCTGCCAAGGAAGCACGTGCCGCAAAGCGCGCAACC
GGTGGCGCAGTTGCCCCCGCACCAGGGTCCTCACGTACCGGTACTGCTCC
CGAAGCTACATCTGCCGCTGCCACTGTCACTACTGTCAGCGAAGAGAGAG
AAAAGTACGGCATCCTGCCTTTGATTCAATCCCAAGTGATGACTAACAAG
GTCTGGGCACGTATCTCTGACCTCTCCCCCAAGCGGGCCGGGCAACGCGT
CCTCCTCCGTGGGCGGGTACACACCTCCCGTGCCGTTGGCAAGGGCGTAT
TTCTTCTTTTGCGACAAGGCATTGCCACTGTGCAAGCTGTTGTTTATCAG
GGCGCGAAAGTGAACAAGGGCATGGTGAAATTTGCGGGAGGGGTGTCGAA
GGAATCGATTGTGGATCTAGTGGGCATTTTGACGGCGCCAAGGGAGCCCG
TGGAAAGCGCGACAGCTAAGATGGTCGAATTGCAAGTAGAGGAGATGTAT
GTCGTGAGCGCAGCTGAGAATGTGCTGCCTTTTCAGTTGGAGGATGCATC
GAGGCCTGATTTGCAGGAAGGGGAGGATAATGTTGAAATGCCCTCGGTGG
GGATGGACAACCGGTTGAATTACAGGTGGATCGACACGAGGACAGCAGCC
AACCAGGCGATCTTCAGGATTCAGCATGGGGTGAGTCAATTATTCCGAGA
ATTTTTGTCGGAGCGAGGGTTCATTGAGATCCACACGCCAAAACTGTTGG
GTGGGGCGTCGGAAAGTGGATCGAGCGTGTTTGCGCTGAACTATTTTGAC
CAGCAGGCGTGCCTGGCCCAGAGCCCACAGCTGTACAAGCAGATTGCCTG
TGCGTGCGGAGGGTTTGAGAAAGTGTTCGAGATAGGGCCGGTGTTTCGAG
CGGAGAAGAGTTTTACGCATCGGCATCTGTGTGAGTTTACTGGCCTGGAC
TTCGAGATGGCCATCCATGAGCATTACTATGAGGTATTGGAATTGTTTTC
AGACCTATTCACATTTATTTTTGACAATTTGTCCTCCCGGTTTGCGGCAG
AGCTGGAGGCAGTGAATAAGCAGCATCCTTTTGAGCCGCTGCAGTTTTGT
CGGCCGTCGTTGAGGTTGTCCTTCGCCGAGGGCGTGGCTCTCTTGCGGGA
GGCCGGGTTCGAAGCTAGTGAGCATGAGGATCTGGACACAGAGAAAGAAA
AAGCATTAGGGAGGATCGTGAAGGAGAAGTACCAGACGGACTTTTATATG
ATGGACCGGTACCCGTTGAGTGTGCGGCCGTTCTACACCATGCCTTGTCC
GGATGACCCTACCCTGAGTAATAGCTATGACATGTTTATTCGGGGGGAGG
AGATCGTGTCCGGGGCGCAGCGGATTCACGATGTGGAATTGTTGGGGCAA
CGTATTGATGCGATGGGCGTGCCGAGGGAGACATTGAGGACTTACATTGA
CGCGTTTAGGCAGGGGGCCTTGCCGCATGGAGGGGGAGGGATTGGGTTAG
AGAGGGTGGTGATGCTATATTTGGGCTTAAAGAACATAAGAAAGACGAGC
TTGTTTCCCCGCGACCCAAAACGCTTGGCGCCTTAG

Synonyms

Publications