jgi.p|Nanoce1779_2|599959, mRNA_7769 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599959
Unique Name	mRNA_7769
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2157
Alignment location	scaffold_21:280248..282524 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600045
Track	FilteredModels2
ProteinId	599959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:280248..282524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599959	gene_7769	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599959	mRNA_7769-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7769	CDS_7769	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:280248..282524+
coding sequence from alignment at scaffold_21:280248..282524+

mRNA sequence

>mRNA_7769 ID=mRNA_7769|Name=jgi.p|Nanoce1779_2|599959|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp
AGGCCATCTCCTCCGCCCGCTTTTCTCCAAGTTCCCATCCGGCTCCCGCA
TCAGCCCAGGAAGCAGCGATGGCCCGCCTGCCTGTCACCCCCGTCCTCCT
GCTCCTGACCTTTGGAGCAGGGGCCTATATTGCCTTTGAGACCTTCAAAG
CCCTTGGCGGCAAGACGCTGAAAGAGTGAGTACTTGTGGGTGGGCGTTGG
AGGTGTGTGGAGGTAATGGGGAAGCGGTTGTTCACCTTACTTTCACAAAA
CTGCACGACTTATTATTAATCCACCTCTTCCTCGGTTACTGTAGCCAAGG
GGGAGGGAAGGTAGAGTTTCCCTTTCTTCCGCATCGTATGGTGGATGGCA
AATTATCCACTGACTTCCAATTCCATCCTTATTCTCTCTTCCATCCCCAC
AGTCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGATGGTAGC
CTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTGGTGCGCG
GCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCTGCACGCT
GCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCGGGTCTAT
TTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGTCCGCATA
GCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTATATGTCA
GCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTCAACTTTAA
TTGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCATGA
CAGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAACT
TTTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTACC
CCAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGAGG
ACAAGCGGAAAGCCAAATAGGAGGAGGTAGGGAGGGAGGAAGGGAAATGA
GATGAATTCATGAATGAAACTGTCATGCTAGGGGTTTGAAGGTGGTGAAA
GGATAGTCAACGGGTGTGAAAGCGAAGAGAGGGAGGAAAGAAAATCTGCA
TTGAGAGGTTGAGAGTCGTGGATGAGTTTGGTGGCTGGAGGAAGGAGGGG
GTTCTGACGGAATGATTTGAGACTTCGAAATGACTGCCGGAAAAAAAGAA
AAATCTATTCAGTCTGTGCCTCAAGCATATATTTCACACGATGTACTGCA
TTCACTACGGACTCCGTAGGGATGGCGAGGGACTAGGAGGAGGAAGAGAC
GCCGCCAGCAATCGTCAATCATCTCTGCGGCACTTTCATAAGCACACTTG
GCGTAGATGGGCTAGAACATCAACAAGATTGAGTGACAAGAATAACCCTA
CTGTTATAAACCTCTTGAAGAGTGAGTACGCATACCTTTGAAATGTACGC
CCGTGCGAGGAGCGTGTGGGCCCGCAAAGGGCAGACTTGATAATTCTTTT
TCCTGTAGTTTCCTACAACCCTAAAATTATCTCGTGCCACCTAATCCGCA
AGAAAATGCGACCTACCAGAGCACAAGCGTGCCTCCTGCTGGGATTGCAC
ACGGGGGAAAGCTTTCCAACAATAAATTGTTGCATATCCTTCCCTTATTT
TTCAGAGTTTTCTAGTGGCTTTCAAAGTTGACAGGTTGTTAAAAGGAAGT
AAAATGAATGCAAGCGAATGGATACTGCAAGGAAAAAACTCTTGTCCTGT
TTGAAATTGACAAGACGAAAGAGAAAGTTAGAAATATAATCAATTTTCAA
TCCTGCGCAGTTAGTAGAACAGACAAGTTGGAATCTGGGCCATACTGCCC
AGCAGTCCAGAAGAGACGGGCACACACCGGTGCGGTAAACGAAAGCAATA
TGCAACGTCTCCTCCATCCTTGCGTTTACGCCATATAGCCACAGACAACC
AACTGACACGCATATCACCACGACATAATGGAAAGCTATTGCTCAGAGGT
CTCTGATGCACAGTATAATTTGTGTACAAATTTGTACCCAGACTCTGCCT
TCTGCGCTTCTATCACCGTCATAGTCGTCATCACTTTTGCCCATACGCCT
TTCGAACCGAACAAACACACCACAGCAAGCCGCCGCATGATCACCACCCC
AAAAGCC

protein sequence of jgi.p|Nanoce1779_2|599959

>mRNA_7769-protein ID=mRNA_7769-protein|Name=jgi.p|Nanoce1779_2|599959|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MVDGKLSTDFQFHPYSLFHPHSLKTLPLFAYHPILMVASWLFFAPLSWSL
ILVRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHF
QSPHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVNFNWTSKIHKNIGKV
ALCMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRS
AGKEDKRKAK*

mRNA from alignment at scaffold_21:280248..282524+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7769 ID=mRNA_7769|Name=jgi.p|Nanoce1779_2|599959|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp|location=Sequence derived from alignment at scaffold_21:280248..282524+ (Nannochloropsis oceanica)
AGGCCATCTCCTCCGCCCGCTTTTCTCCAAGTTCCCATCCGGCTCCCGCA
TCAGCCCAGGAAGCAGCGATGGCCCGCCTGCCTGTCACCCCCGTCCTCCT
GCTCCTGACCTTTGGAGCAGGGGCCTATATTGCCTTTGAGACCTTCAAAG
CCCTTGGCGGCAAGACGCTGAAAGAGTGAGTACTTGTGGGTGGGCGTTGG
AGGTGTGTGGAGGTAATGGGGAAGCGGTTGTTCACCTTACTTTCACAAAA
CTGCACGACTTATTATTAATCCACCTCTTCCTCGGTTACTGTAGCCAAGG
GGGAGGGAAGGTAGAGTTTCCCTTTCTTCCGCATCGTATGGTGGATGGCA
AATTATCCACTGACTTCCAATTCCATCCTTATTCTCTCTTCCATCCCCAC
AGTCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGATGGTAGC
CTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTGGTGCGCG
GCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCTGCACGCT
GCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCGGGTCTAT
TTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGTCCGCATA
GCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTATATGTCA
GCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTAGGAACTAG
AGGTGGTGTTTCAACTAGGAGGTTTCCTCTTCTTATTTTGTGCTTCTGCT
CTCAGCACACATACACTAACCGTTGCTTTCCATACATCTATGGTCTGAAC
TCCCGTCAGGTCAACTTTAATTGGACAAGCAAGATTCACAAAAACATCGG
GAAAGTGGCCCTGTGCATGACAGGGTTAGCTATCTCCACGGGTCTGTTCA
CTCGATGGGGCAAGACAACTTTTGAGGATAAGAACATACGGACCGGTTTG
GCATTGTGCATCATTGTACCCCAGCTGATTGTGGCTTTGGATGTAATGAC
GCGATCCGCAGGGAAGGAGGACAAGCGGAAAGCCAAATAGGAGGAGGTAG
GGAGGGAGGAAGGGAAATGAGATGAATTCATGAATGAAACTGTCATGCTA
GGGGTTTGAAGGTGGTGAAAGGATAGTCAACGGGTGTGAAAGCGAAGAGA
GGGAGGAAAGAAAATCTGCATTGAGAGGTTGAGAGTCGTGGATGAGTTTG
GTGGCTGGAGGAAGGAGGGGGTTCTGACGGAATGATTTGAGACTTCGAAA
TGACTGCCGGAAAAAAAGAAAAATCTATTCAGTCTGTGCCTCAAGCATAT
ATTTCACACGATGTACTGCATTCACTACGGACTCCGTAGGGATGGCGAGG
GACTAGGAGGAGGAAGAGACGCCGCCAGCAATCGTCAATCATCTCTGCGG
CACTTTCATAAGCACACTTGGCGTAGATGGGCTAGAACATCAACAAGATT
GAGTGACAAGAATAACCCTACTGTTATAAACCTCTTGAAGAGTGAGTACG
CATACCTTTGAAATGTACGCCCGTGCGAGGAGCGTGTGGGCCCGCAAAGG
GCAGACTTGATAATTCTTTTTCCTGTAGTTTCCTACAACCCTAAAATTAT
CTCGTGCCACCTAATCCGCAAGAAAATGCGACCTACCAGAGCACAAGCGT
GCCTCCTGCTGGGATTGCACACGGGGGAAAGCTTTCCAACAATAAATTGT
TGCATATCCTTCCCTTATTTTTCAGAGTTTTCTAGTGGCTTTCAAAGTTG
ACAGGTTGTTAAAAGGAAGTAAAATGAATGCAAGCGAATGGATACTGCAA
GGAAAAAACTCTTGTCCTGTTTGAAATTGACAAGACGAAAGAGAAAGTTA
GAAATATAATCAATTTTCAATCCTGCGCAGTTAGTAGAACAGACAAGTTG
GAATCTGGGCCATACTGCCCAGCAGTCCAGAAGAGACGGGCACACACCGG
TGCGGTAAACGAAAGCAATATGCAACGTCTCCTCCATCCTTGCGTTTACG
CCATATAGCCACAGACAACCAACTGACACGCATATCACCACGACATAATG
GAAAGCTATTGCTCAGAGGTCTCTGATGCACAGTATAATTTGTGTACAAA
TTTGTACCCAGACTCTGCCTTCTGCGCTTCTATCACCGTCATAGTCGTCA
TCACTTTTGCCCATACGCCTTTCGAACCGAACAAACACACCACAGCAAGC
CGCCGCATGATCACCACCCCAAAAGCC

Coding sequence (CDS) from alignment at scaffold_21:280248..282524+

>mRNA_7769 ID=mRNA_7769|Name=jgi.p|Nanoce1779_2|599959|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_21:280248..282524+ (Nannochloropsis oceanica)
ATGGTGGATGGCAAATTATCCACTGACTTCCAATTCCATCCTTATTCTCT
CTTCCATCCCCACAGTCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCA
TCCTGATGGTAGCCTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTC
ATCTTGGTGCGCGGCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGAC
GCAGCTGCACGCTGCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGG
CCCTCGGGTCTATTTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTC
CAGAGTCCGCATAGCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTC
GAGCTATATGTCAGCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAA
AGGTCAACTTTAATTGGACAAGCAAGATTCACAAAAACATCGGGAAAGTG
GCCCTGTGCATGACAGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATG
GGGCAAGACAACTTTTGAGGATAAGAACATACGGACCGGTTTGGCATTGT
GCATCATTGTACCCCAGCTGATTGTGGCTTTGGATGTAATGACGCGATCC
GCAGGGAAGGAGGACAAGCGGAAAGCCAAATAGATGGTGGATGGCAAATT
ATCCACTGACTTCCAATTCCATCCTTATTCTCTCTTCCATCCCCACAGTC
TTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGATGGTAGCCTCC
TGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTGGTGCGCGGCAG
GACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCTGCACGCTGCAA
GCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCGGGTCTATTTTT
GTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGTCCGCATAGCAT
GATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTATATGTCAGCGC
TTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTCAACTTTAATTGG
ACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCATGACAGG
GTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAACTTTTG
AGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTACCCCAG
CTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGAGGACAA
GCGGAAAGCCAAATAG

Synonyms

Publications