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Properties
| Property Name | Value |
|---|
| TranscriptId | 600042 |
| Track | FilteredModels2 |
| ProteinId | 599956 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:276810..279098 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7768 ID=mRNA_7768|Name=jgi.p|Nanoce1779_2|599956|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp
AGGAAGGGGAGGAAGAAGGGGACGACCATGGTTTGTTGTCGCCGGATGAA
AGGGGGAGGAAGCAAGGTGAGAGTGAGAAGTTTGAGGCGGTGCTGGGTAT
GGAGCTGGAGAAAGTAGAAAGCTTTTACGAGGATACGACGACGGATTTGG
GACAGCAACTTGGATTCCTGAAGGCGCAGTTGAGGGGAGATGGGAATAAG
AGTAGTCAGCTGGCTTTAGAGGATCTGACAAGTTGGGCTTATCCCATGAG
TGATGAAGACAAAAAGCGCGCCAAGCAGCTAGGACCGAAAGAGAGGGAAC
TCATCGAGACAACCCTGATACGGCTGAATCGAGAGATGACGCTTCTGGAG
AACTACTGCATCATCAACTACACGGGGTTCATCAAAATCATAAAAAAACA
CGACAAGCTCATGCCATCCCGCCCGCTCCGTCCCGCTCTTCTCCCTAAGT
TGGACAATACCCCTTTCTTCCAGCATGAGCGCTTGGAGGCGATCAAGAAG
GAGGTGACAGCGATTTTTGCCGATATTTTTTGTAACCGGGACAAAAACCA
GGCGGCCGCCATGCTATTGCCGAAGCGCTTCCGAACGAACCTGGACTACT
TCCTCCTCCACCTTGGGTATAAACTAGGGGTCGCCGCCACGCTCGCTCTT
TGGGTGGTGTGGGACTGTGTCGTCCAAGTTGCCAAATTCGGAAAGCCCAC
CATTGTGGCCAAAATGGCCTTCCCTGTCTTTCGAGCCGTGGGGGGGTTGT
TGCTTTTGCACTGGTGTTGGGCGATCCTCGAGCATTTCTGCAATCATTTA
CGGATTAATTTCGTGTATTTGCTTGATCTGTCCCCTAAGAATGTGTCGAG
CCCGCGAAAGATCTTCGATGAGGCGGTGAATGAGTCGATTGTGTATTTGA
CGTGTATGCTTTTGTACTACAAGGTGCTGGTGGGTGGATTCCCTGACTGG
ATTCCTGCGGGATGGTACCCCCTTATCCTGGTGTCTTATACCGTGTACTG
CCTGGTCTTCCCCTGGAGGCAACGGAAGGGGATATGGTGGACTGTGGGGA
GGGTGCTGTCGAGCCCAATGGTGAGTGTGACGTTGCTTGATACTGTAGTC
GCGGATATGTTGACGAGTCTGGTTAAGGTCTTGCTAGATCTGGCTTGGTC
GGCCTTCTACATATGTTCGGGGGATTTTTCGAGGGATATCGACGGGGAGG
TGGATGCCCAACCCGGGGATTGGGAGACTAGTGTGTTGTACTCGAAGGTA
CTGGCGCCCGTAGTTGTGATTTTGCCGTTGTGGTGGCGGTTTATGCAATG
TTTGAGAAGGTTTTACGACACGGGAAATAGGTGGCCGCACTTGTTCAACG
CAGCCAAGTATGCCTTGGCCCAGACAGTGACGCTGTTTGGGGCGTTCCAT
CGTGTGTATTATCATGGGAGCTTTCAGAGTGGAGGGGGAGGGATTGTGCG
GCGGGGGCTGACGTATGATGTGCTGTGGGTGATTGTGACGGTGGTGAGTA
CATGTTACTCGTATGTATGGGATGTGACGATGGATTGGGGCTTGGGGAGA
CCAAGTAAGCGCTTCTTGAATGATCGGAGAATGTGTTCGAGTGATGTGCC
CTATTATGCGGCGATTGTCGCGGATTTATTCCTGAGGTTCTTGTGGGTGA
ATACCTTGATTCCTCCTGGATCGGGTGGGTTGTTGTCGCTGCCGCTTTAT
TTGAATGCGTTTCTGATGGTCATGGAGATATTACGACGGACGTTCTGGGG
GATCCTGAGGCTGGAGAATGAGCAACTGAGGAACACCCAGGGCTTCAGGC
GGGTGGATGTGATACCTTTGTCCTTCTCGACGGAGAGCCAGCATGAGTAT
CGGGACCCGAAGAACACGAATAATTTAAAAGTCATCCTGGAGGTGAGCCT
CGTTGCGGGGCTGGTGATCTTCCTGTCAATTGGTGCGGTAGTGGTGGCGG
ATGGGATCGATGAGGGCACATAGATCCATCCTCCCTCAGTCCCCCCCTCA
CTTCCGTGACCGAGAGTCAGGCTGAGTACTGGCATCCGAAGAATACGAAT
AACGTGAATGCTGTTTAAGAGATGAGCGTTTTGACGGGCTTGGTGAACTG
TTACGTGGTGGTGGCGGATGATATTGTTAAAGGAGCGTAGTGATTGAAGG
GGGT back to topprotein sequence of jgi.p|Nanoce1779_2|599956 >mRNA_7768-protein ID=mRNA_7768-protein|Name=jgi.p|Nanoce1779_2|599956|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MELEKVESFYEDTTTDLGQQLGFLKAQLRGDGNKSSQLALEDLTSWAYPM
SDEDKKRAKQLGPKERELIETTLIRLNREMTLLENYCIINYTGFIKIIKK
HDKLMPSRPLRPALLPKLDNTPFFQHERLEAIKKEVTAIFADIFCNRDKN
QAAAMLLPKRFRTNLDYFLLHLGYKLGVAATLALWVVWDCVVQVAKFGKP
TIVAKMAFPVFRAVGGLLLLHWCWAILEHFCNHLRINFVYLLDLSPKNVS
SPRKIFDEAVNESIVYLTCMLLYYKVLVGGFPDWIPAGWYPLILVSYTVY
CLVFPWRQRKGIWWTVGRVLSSPMVSVTLLDTVVADMLTSLVKVLLDLAW
SAFYICSGDFSRDIDGEVDAQPGDWETSVLYSKVLAPVVVILPLWWRFMQ
CLRRFYDTGNRWPHLFNAAKYALAQTVTLFGAFHRVYYHGSFQSGGGGIV
RRGLTYDVLWVIVTVVSTCYSYVWDVTMDWGLGRPSKRFLNDRRMCSSDV
PYYAAIVADLFLRFLWVNTLIPPGSGGLLSLPLYLNAFLMVMEILRRTFW
GILRLENEQLRNTQGFRRVDVIPLSFSTESQHEYRDPKNTNNLKVILEVS
LVAGLVIFLSIGAVVVADGIDEGT* back to topmRNA from alignment at scaffold_21:276810..279098- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7768 ID=mRNA_7768|Name=jgi.p|Nanoce1779_2|599956|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at scaffold_21:276810..279098- (Nannochloropsis oceanica)
AGGAAGGGGAGGAAGAAGGGGACGACCATGGTTTGTTGTCGCCGGATGAA
AGGGGGAGGAAGCAAGGTGAGAGTGAGAAGTTTGAGGCGGTGCTGGGTAT
GGAGCTGGAGAAAGTAGAAAGCTTTTACGAGGATACGACGACGGATTTGG
GACAGCAACTTGGATTCCTGAAGGCGCAGTTGAGGGGAGATGGGAATAAG
AGTAGTCAGCTGGCTTTAGAGGATCTGACAAGTTGGGCTTATCCCATGAG
TGATGAAGACAAAAAGCGCGCCAAGCAGCTAGGACCGAAAGAGAGGGAAC
TCATCGAGACAACCCTGATACGGCTGAATCGAGAGATGACGCTTCTGGAG
AACTACTGCATCATCAACTACACGGGGTTCATCAAAATCATAAAAAAACA
CGACAAGCTCATGCCATCCCGCCCGCTCCGTCCCGCTCTTCTCCCTAAGT
TGGACAATACCCCTTTCTTCCAGCATGAGCGCTTGGAGGCGATCAAGAAG
GAGGTGACAGCGATTTTTGCCGATATTTTTTGTAACCGGGACAAAAACCA
GGCGGCCGCCATGCTATTGCCGAAGCGCTTCCGAACGAACCTGGACTACT
TCCTCCTCCACCTTGGGTATAAACTAGGTACGCCACACGCTCCTATCCAC
CGCGCTCTCCTTCCTCCCACCCTGTTTGCATCCTAAGGGGATAGTGCCGT
GTCACTGAATTCTGAAAACCCACTATCCCGAACTTCCTCCCTCCCTCCCT
CCTTCCTTCCAGGGGTCGCCGCCACGCTCGCTCTTTGGGTGGTGTGGGAC
TGTGTCGTCCAAGTTGCCAAATTCGGAAAGCCCACCATTGTGGCCAAAAT
GGCCTTCCCTGTCTTTCGAGCCGTGGGGGGGTTGTTGCTTTTGCACTGGT
GTTGGGCGATCCTCGAGCATTTCTGCAATCATTTACGGATTAATTTCGTG
TATTTGCTTGATCTGTCCCCTAAGAATGTGTCGAGCCCGCGAAAGATCTT
CGATGAGGCGGTGAATGAGTCGATTGTGTATTTGACGTGTATGCTTTTGT
ACTACAAGGTGCTGGTGGGTGGATTCCCTGACTGGATTCCTGCGGGATGG
TACCCCCTTATCCTGGTGTCTTATACCGTGTACTGCCTGGTCTTCCCCTG
GAGGCAACGGAAGGGGATATGGTGGACTGTGGGGAGGGTGCTGTCGAGCC
CAATGGTGAGTGTGACGTTGCTTGATACTGTAGTCGCGGATATGTTGACG
AGTCTGGTTAAGGTCTTGCTAGATCTGGCTTGGTCGGCCTTCTACATATG
TTCGGGGGATTTTTCGAGGGATATCGACGGGGAGGTGGATGCCCAACCCG
GGGATTGGGAGACTAGTGTGTTGTACTCGAAGGTACTGGCGCCCGTAGTT
GTGATTTTGCCGTTGTGGTGGCGGTTTATGCAATGTTTGAGAAGGTTTTA
CGACACGGGAAATAGGTGGCCGCACTTGTTCAACGCAGCCAAGTATGCCT
TGGCCCAGACAGTGACGCTGTTTGGGGCGTTCCATCGTGTGTATTATCAT
GGGAGCTTTCAGAGTGGAGGGGGAGGGATTGTGCGGCGGGGGCTGACGTA
TGATGTGCTGTGGGTGATTGTGACGGTGGTGAGTACATGTTACTCGTATG
TATGGGATGTGACGATGGATTGGGGCTTGGGGAGACCAAGTAAGCGCTTC
TTGAATGATCGGAGAATGTGTTCGAGTGATGTGCCCTATTATGCGGCGAT
TGTCGCGGATTTATTCCTGAGGTTCTTGTGGGTGAATACCTTGATTCCTC
CTGGATCGGGTGGGTTGTTGTCGCTGCCGCTTTATTTGAATGCGTTTCTG
ATGGTCATGGAGATATTACGACGGACGTTCTGGGGGATCCTGAGGCTGGA
GAATGAGCAACTGAGGAACACCCAGGGCTTCAGGCGGGTGGATGTGATAC
CTTTGTCCTTCTCGACGGAGAGCCAGCATGAGTATCGGGACCCGAAGAAC
ACGAATAATTTAAAAGTCATCCTGGAGGTGAGCCTCGTTGCGGGGCTGGT
GATCTTCCTGTCAATTGGTGCGGTAGTGGTGGCGGATGGGATCGATGAGG
GCACATAGATCCATCCTCCCTCAGTCCCCCCCTCACTTCCGTGACCGAGA
GTCAGGCTGAGTACTGGCATCCGAAGAATACGAATAACGTGAATGCTGTT
TAAGAGATGAGCGTTTTGACGGGCTTGGTGAACTGTTACGTGGTGGTGGC
GGATGATATTGTTAAAGGAGCGTAGTGATTGAAGGGGGT back to topCoding sequence (CDS) from alignment at scaffold_21:276810..279098- >mRNA_7768 ID=mRNA_7768|Name=jgi.p|Nanoce1779_2|599956|organism=Nannochloropsis oceanica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_21:276810..279098- (Nannochloropsis oceanica)
GGGTCGCCGCCACGCTCGCTCTTTGGGTGGTGTGGGACTGTGTCGTCCAA
GTTGCCAAATTCGGAAAGCCCACCATTGTGGCCAAAATGGCCTTCCCTGT
CTTTCGAGCCGTGGGGGGGTTGTTGCTTTTGCACTGGTGTTGGGCGATCC
TCGAGCATTTCTGCAATCATTTACGGATTAATTTCGTGTATTTGCTTGAT
CTGTCCCCTAAGAATGTGTCGAGCCCGCGAAAGATCTTCGATGAGGCGGT
GAATGAGTCGATTGTGTATTTGACGTGTATGCTTTTGTACTACAAGGTGC
TGGTGGGTGGATTCCCTGACTGGATTCCTGCGGGATGGTACCCCCTTATC
CTGGTGTCTTATACCGTGTACTGCCTGGTCTTCCCCTGGAGGCAACGGAA
GGGGATATGGTGGACTGTGGGGAGGGTGCTGTCGAGCCCAATGGTGAGTG
TGACGTTGCTTGATACTGTAGTCGCGGATATGTTGACGAGTCTGGTTAAG
GTCTTGCTAGATCTGGCTTGGTCGGCCTTCTACATATGTTCGGGGGATTT
TTCGAGGGATATCGACGGGGAGGTGGATGCCCAACCCGGGGATTGGGAGA
CTAGTGTGTTGTACTCGAAGGTACTGGCGCCCGTAGTTGTGATTTTGCCG
TTGTGGTGGCGGTTTATGCAATGTTTGAGAAGGTTTTACGACACGGGAAA
TAGGTGGCCGCACTTGTTCAACGCAGCCAAGTATGCCTTGGCCCAGACAG
TGACGCTGTTTGGGGCGTTCCATCGTGTGTATTATCATGGGAGCTTTCAG
AGTGGAGGGGGAGGGATTGTGCGGCGGGGGCTGACGTATGATGTGCTGTG
GGTGATTGTGACGGTGGTGAGTACATGTTACTCGTATGTATGGGATGTGA
CGATGGATTGGGGCTTGGGGAGACCAAGTAAGCGCTTCTTGAATGATCGG
AGAATGTGTTCGAGTGATGTGCCCTATTATGCGGCGATTGTCGCGGATTT
ATTCCTGAGGTTCTTGTGGGTGAATACCTTGATTCCTCCTGGATCGGGTG
GGTTGTTGTCGCTGCCGCTTTATTTGAATGCGTTTCTGATGGTCATGGAG
ATATTACGACGGACGTTCTGGGGGATCCTGAGGCTGGAGAATGAGCAACT
GAGGAACACCCAGGGCTTCAGGCGGGTGGATGTGATACCTTTGTCCTTCT
CGACGGAGAGCCAGCATGAGTATCGGGACCCGAAGAACACGAATAATTTA
AAAGTCATCCTGGAGGTGAGCCTCGTTGCGGGGCTGGTGATCTTCCTGTC
AATTGGTGCGGTAGTGGTGGCGGATGGGATCGATGAGGGCACATAGATGG
AGCTGGAGAAAGTAGAAAGCTTTTACGAGGATACGACGACGGATTTGGGA
CAGCAACTTGGATTCCTGAAGGCGCAGTTGAGGGGAGATGGGAATAAGAG
TAGTCAGCTGGCTTTAGAGGATCTGACAAGTTGGGCTTATCCCATGAGTG
ATGAAGACAAAAAGCGCGCCAAGCAGCTAGGACCGAAAGAGAGGGAACTC
ATCGAGACAACCCTGATACGGCTGAATCGAGAGATGACGCTTCTGGAGAA
CTACTGCATCATCAACTACACGGGGTTCATCAAAATCATAAAAAAACACG
ACAAGCTCATGCCATCCCGCCCGCTCCGTCCCGCTCTTCTCCCTAAGTTG
GACAATACCCCTTTCTTCCAGCATGAGCGCTTGGAGGCGATCAAGAAGGA
GGTGACAGCGATTTTTGCCGATATTTTTTGTAACCGGGACAAAAACCAGG
CGGCCGCCATGCTATTGCCGAAGCGCTTCCGAACGAACCTGGACTACTTC
CTCCTCCACCTTGGGTATAAACTAGGGGTCGCCGCCACGCTCGCTCTTTG
GGTGGTGTGGGACTGTGTCGTCCAAGTTGCCAAATTCGGAAAGCCCACCA
TTGTGGCCAAAATGGCCTTCCCTGTCTTTCGAGCCGTGGGGGGGTTGTTG
CTTTTGCACTGGTGTTGGGCGATCCTCGAGCATTTCTGCAATCATTTACG
GATTAATTTCGTGTATTTGCTTGATCTGTCCCCTAAGAATGTGTCGAGCC
CGCGAAAGATCTTCGATGAGGCGGTGAATGAGTCGATTGTGTATTTGACG
TGTATGCTTTTGTACTACAAGGTGCTGGTGGGTGGATTCCCTGACTGGAT
TCCTGCGGGATGGTACCCCCTTATCCTGGTGTCTTATACCGTGTACTGCC
TGGTCTTCCCCTGGAGGCAACGGAAGGGGATATGGTGGACTGTGGGGAGG
GTGCTGTCGAGCCCAATGGTGAGTGTGACGTTGCTTGATACTGTAGTCGC
GGATATGTTGACGAGTCTGGTTAAGGTCTTGCTAGATCTGGCTTGGTCGG
CCTTCTACATATGTTCGGGGGATTTTTCGAGGGATATCGACGGGGAGGTG
GATGCCCAACCCGGGGATTGGGAGACTAGTGTGTTGTACTCGAAGGTACT
GGCGCCCGTAGTTGTGATTTTGCCGTTGTGGTGGCGGTTTATGCAATGTT
TGAGAAGGTTTTACGACACGGGAAATAGGTGGCCGCACTTGTTCAACGCA
GCCAAGTATGCCTTGGCCCAGACAGTGACGCTGTTTGGGGCGTTCCATCG
TGTGTATTATCATGGGAGCTTTCAGAGTGGAGGGGGAGGGATTGTGCGGC
GGGGGCTGACGTATGATGTGCTGTGGGTGATTGTGACGGTGGTGAGTACA
TGTTACTCGTATGTATGGGATGTGACGATGGATTGGGGCTTGGGGAGACC
AAGTAAGCGCTTCTTGAATGATCGGAGAATGTGTTCGAGTGATGTGCCCT
ATTATGCGGCGATTGTCGCGGATTTATTCCTGAGGTTCTTGTGGGTGAAT
ACCTTGATTCCTCCTGGATCGGGTGGGTTGTTGTCGCTGCCGCTTTATTT
GAATGCGTTTCTGATGGTCATGGAGATATTACGACGGACGTTCTGGGGGA
TCCTGAGGCTGGAGAATGAGCAACTGAGGAACACCCAGGGCTTCAGGCGG
GTGGATGTGATACCTTTGTCCTTCTCGACGGAGAGCCAGCATGAGTATCG
GGACCCGAAGAACACGAATAATTTAAAAGTCATCCTGGAGGTGAGCCTCG
TTGCGGGGCTGGTGATCTTCCTGTCAATTGGTGCGGTAGTGGTGGCGGAT
GGGATCGATGAGGGCACATAGATGGAGCTGGAGAAAGTAGAAAGCTTTTA
CGAGGATACGACGACGGATTTGGGACAGCAACTTGGATTCCTGAAGGCGC
AGTTGAGGGGAGATGGGAATAAGAGTAGTCAGCTGGCTTTAGAGGATCTG
ACAAGTTGGGCTTATCCCATGAGTGATGAAGACAAAAAGCGCGCCAAGCA
GCTAGGACCGAAAGAGAGGGAACTCATCGAGACAACCCTGATACGGCTGA
ATCGAGAGATGACGCTTCTGGAGAACTACTGCATCATCAACTACACGGGG
TTCATCAAAATCATAAAAAAACACGACAAGCTCATGCCATCCCGCCCGCT
CCGTCCCGCTCTTCTCCCTAAGTTGGACAATACCCCTTTCTTCCAGCATG
AGCGCTTGGAGGCGATCAAGAAGGAGGTGACAGCGATTTTTGCCGATATT
TTTTGTAACCGGGACAAAAACCAGGCGGCCGCCATGCTATTGCCGAAGCG
CTTCCGAACGAACCTGGACTACTTCCTCCTCCACCTTGGGTATAAACTAG back to top
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