jgi.p|Nanoce1779_2|599950, mRNA_7766 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599950
Unique NamemRNA_7766
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length840
Alignment locationscaffold_21:273549..274388 -

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Properties
Property NameValue
TranscriptId600036
TrackFilteredModels2
ProteinId599950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:273549..274388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599950gene_7766Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599950mRNA_7766-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7766CDS_7766Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7766 ID=mRNA_7766|Name=jgi.p|Nanoce1779_2|599950|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
AGTTCGCCCGGAATACCCTTAACAACATTATCAGCATGAACGACAAGCCC
GCTCTGGACTGGGCGGACCCCGTTACCCTGGGCCTTGCCATGTTTGCTGT
CTTTTACGTCGTCACAATCATTCTCGCCTTACTCGCTTTCCGCCTCTTCG
TTGTCCTCCCCAACCGCGTCACCAATGCCCGAGTTTCAACCCCCGGCAGC
GAAAAAGAGCCTCTACGAAAGATGCCAGTGTCACTCCTTGTCGTTCTAGG
CTCGGGGGGTCACTCCAAGGAGATGCTCACGATGCTCCGTGGCCTCGACC
CACAGCGCTACCACCCCATCGTCTTCGTCCGGGCCGTGTCGGACACCCGC
AGCGAGGGCATGCTTAAGACCACCTTCGCCTCCTTAACCACCTCTTCGTC
CTCTGATTCCAATTTCCTCATCAAACCAAGCGCTATACTGACCGTGCCCC
GCGCCCGCTCTGTGGGGCAATCGTGGTTCACCACCCCCTTCACCACGCTT
CAAGCCACGGTAGCATCCCTCATGCTCGTCGCAAAACAGCAGCCCGACGT
GATCTTATGTAATGGTCCAGGGACATGCTTGCCTATATGTTTGGCTGGAT
ATGTCCTCCGTTTTTGGGGGTTGAAACACGTCAAGGTCATTTTTGTGGAG
TCTTTTTGTAGGGTTCAGAGCTTGTCATTGACCGGTAGGCTGCTTTATCG
AGTTGCGGATAGATTCATCGTGCAATGGCAGGGGTTAAAGGGCAGATACC
CACAGGCAGAGTATTTGGGACAGCTTTGTTAGTTTGGCGGGAGAATAAGG
CAAAGTCGTTAAAGGAGCAAAGTCTTTGTACAGTAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|599950

>mRNA_7766-protein ID=mRNA_7766-protein|Name=jgi.p|Nanoce1779_2|599950|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MNDKPALDWADPVTLGLAMFAVFYVVTIILALLAFRLFVVLPNRVTNARV
STPGSEKEPLRKMPVSLLVVLGSGGHSKEMLTMLRGLDPQRYHPIVFVRA
VSDTRSEGMLKTTFASLTTSSSSDSNFLIKPSAILTVPRARSVGQSWFTT
PFTTLQATVASLMLVAKQQPDVILCNGPGTCLPICLAGYVLRFWGLKHVK
VIFVESFCRVQSLSLTGRLLYRVADRFIVQWQGLKGRYPQAEYLGQLC*
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mRNA from alignment at scaffold_21:273549..274388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7766 ID=mRNA_7766|Name=jgi.p|Nanoce1779_2|599950|organism=Nannochloropsis oceanica|type=mRNA|length=840bp|location=Sequence derived from alignment at scaffold_21:273549..274388- (Nannochloropsis oceanica)
AGTTCGCCCGGAATACCCTTAACAACATTATCAGCATGAACGACAAGCCC
GCTCTGGACTGGGCGGACCCCGTTACCCTGGGCCTTGCCATGTTTGCTGT
CTTTTACGTCGTCACAATCATTCTCGCCTTACTCGCTTTCCGCCTCTTCG
TTGTCCTCCCCAACCGCGTCACCAATGCCCGAGTTTCAACCCCCGGCAGC
GAAAAAGAGCCTCTACGAAAGATGCCAGTGTCACTCCTTGTCGTTCTAGG
CTCGGGGGGTCACTCCAAGGAGATGCTCACGATGCTCCGTGGCCTCGACC
CACAGCGCTACCACCCCATCGTCTTCGTCCGGGCCGTGTCGGACACCCGC
AGCGAGGGCATGCTTAAGACCACCTTCGCCTCCTTAACCACCTCTTCGTC
CTCTGATTCCAATTTCCTCATCAAACCAAGCGCTATACTGACCGTGCCCC
GCGCCCGCTCTGTGGGGCAATCGTGGTTCACCACCCCCTTCACCACGCTT
CAAGCCACGGTAGCATCCCTCATGCTCGTCGCAAAACAGCAGCCCGACGT
GATCTTATGTAATGGTCCAGGGACATGCTTGCCTATATGTTTGGCTGGAT
ATGTCCTCCGTTTTTGGGGGTTGAAACACGTCAAGGTCATTTTTGTGGAG
TCTTTTTGTAGGGTTCAGAGCTTGTCATTGACCGGTAGGCTGCTTTATCG
AGTTGCGGATAGATTCATCGTGCAATGGCAGGGGTTAAAGGGCAGATACC
CACAGGCAGAGTATTTGGGACAGCTTTGTTAGTTTGGCGGGAGAATAAGG
CAAAGTCGTTAAAGGAGCAAAGTCTTTGTACAGTAGGAGG
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Coding sequence (CDS) from alignment at scaffold_21:273549..274388-

>mRNA_7766 ID=mRNA_7766|Name=jgi.p|Nanoce1779_2|599950|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_21:273549..274388- (Nannochloropsis oceanica)
ATGAACGACAAGCCCGCTCTGGACTGGGCGGACCCCGTTACCCTGGGCCT
TGCCATGTTTGCTGTCTTTTACGTCGTCACAATCATTCTCGCCTTACTCG
CTTTCCGCCTCTTCGTTGTCCTCCCCAACCGCGTCACCAATGCCCGAGTT
TCAACCCCCGGCAGCGAAAAAGAGCCTCTACGAAAGATGCCAGTGTCACT
CCTTGTCGTTCTAGGCTCGGGGGGTCACTCCAAGGAGATGCTCACGATGC
TCCGTGGCCTCGACCCACAGCGCTACCACCCCATCGTCTTCGTCCGGGCC
GTGTCGGACACCCGCAGCGAGGGCATGCTTAAGACCACCTTCGCCTCCTT
AACCACCTCTTCGTCCTCTGATTCCAATTTCCTCATCAAACCAAGCGCTA
TACTGACCGTGCCCCGCGCCCGCTCTGTGGGGCAATCGTGGTTCACCACC
CCCTTCACCACGCTTCAAGCCACGGTAGCATCCCTCATGCTCGTCGCAAA
ACAGCAGCCCGACGTGATCTTATGTAATGGTCCAGGGACATGCTTGCCTA
TATGTTTGGCTGGATATGTCCTCCGTTTTTGGGGGTTGAAACACGTCAAG
GTCATTTTTGTGGAGTCTTTTTGTAGGGTTCAGAGCTTGTCATTGACCGG
TAGGCTGCTTTATCGAGTTGCGGATAGATTCATCGTGCAATGGCAGGGGT
TAAAGGGCAGATACCCACAGGCAGAGTATTTGGGACAGCTTTGTTAG
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Synonyms
Publications