jgi.p|Nanoce1779_2|168280, mRNA_7765 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|168280
Unique Name	mRNA_7765
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2015
Alignment location	scaffold_21:271083..273274 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	168366
Track	FilteredModels2
ProteinId	168280

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:271083..273274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|168280	gene_7765	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|168280	mRNA_7765-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7765	CDS_7765	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:271083..273274+
coding sequence from alignment at scaffold_21:271083..273274+

mRNA sequence

>mRNA_7765 ID=mRNA_7765|Name=jgi.p|Nanoce1779_2|168280|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
TCCCTTCCTCCTCGAACCACTCTCCCTTCCCTCCCTTCCCCCTTGCTCCA
CAAAAACAGACCCGACGCTCTCCCTCCACCTCCTTCCCCCCCAGCTCCTC
CTCTTCCTCCTCGCTTCAAATGAAAATCCAATGGGACCCATACACGGGGC
AATTTTTGGACCTAGGCGATGACGTGGAAGAGATCGGCGTTCCCTCCCGT
AATCCGTCTTCCTCCTCGTCCTCGTCCTCTCCCACCACCACCACTCCTTC
GGGTGAATGTGAACAAGGAAGTAAAGCCACAGGTGTGAAGACGGAGGACT
TGCAGGTGGTTGGTGGAAATATAGGCAAAGCGAATGCGTACATTGCTCAG
AAGCTGATGGAGGCGTCGATTGAGGAGGGGACGGGGATAGTAGATGCCTT
GATGAAGGAGTTGGACGACCTGGATCTAGCTGAAGGCGAAGAAAACACCT
GGCCAAAAATCACGGAGAACATGCAATCTGTTTTGAGGAACGAAGAAGCC
GCTGCTTATGAAACAGTTTGTCGCAACGTGGACCTCACGAGAGCTACCAC
AGTGTTAGTTTATTTGAGGGAAAGTGCCATGGCGCCTGCGCTCAAGGAGT
GCCTGAAAGCAAGAGGGGGGTCATCGAGGGAGGTCGTGCTTGGAGGAGGA
GGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
AGACGTGAAAGGAGCGAGTGTATTGGTGTTGTTGCCGGATACAAAGGGGG
GAGGAAGTGTGATGGAAGCACCTGCGGTAGAGGCGCTGATTGCAGCAGCG
GCGGAAGGGGGGGGGTTGCGACATGTGGTTTATTTATCGAGCTTGGGGTC
AGAAAAAGCATTGTTTCAATTTTCCTTTGATAGTATGAGTGGGGTGCTGG
AGAAAAAGAAGGCAGTGGAACAGAGCATCAAGAGATTGAGTAAAAGTTTG
GGTTATAACTTTTCCATCATCCGGGTTGGATCGCTGGGGCCGGTGAAGAG
CGGGGAGGAGGCGCTGAACCTCTCCCCCGGCGACCCTTTCAATGGGGGGG
CCACGAACTACGCGACTGCGGCCCAGGCGGTGGTGCAGTCCATCGCGTTG
CCCATGGCGTTGAACGCGTCCTTCTCGGTGATCAATGGCAAGGGCACCAG
CCCGCCGACCGATGCGGGATGGAGGGACAGCATGCTCAAACTGGTGGGAC
CGGAGGTGCTGCGCTTGTCCTTCAAGGAGACCGACGTGTTGGGCATGCGC
ATGTCACTCCGAGCGTGGGCTCTGCAGTACATGGAGGGGGAAAGGAGGCT
GACCACCAAGGTTTTCGCTGTCAGGACGCCCCTGGGTGCCAAGATCTATT
TTTTGCCCACCATGCAGAGCCTCGGGCCGGGCTTTAGGGAGGAAAAAGCG
ATTGAGAAGGCCCGGATGAAGGGGGAGGCGATTCTGGGGGGGCAGAAACC
GACGAGGCCAATTCTAGAAGGGGGGTTGGAGGTGTGTGTGGAGGAAGTGA
CGGAGGCAGGGAAAGAGGGAGACAAGAGGGTGCGGGTGAGGAGGATTGCA
ATGGAGGAGGGTACGGTTGTGAAGGCAATGTCGGAGAGGGAGCTGTTGGA
TAGTCTCAAGGCTGAAATTGAGAGCACGGAAAAATCGGCCAAGTCGGGAA
GGAGGGTTGGGGGAGGAACACCGCCTGTATAGAGTGCCCTCCCTCCCTCC
CTCACTCACTCCCTTCCTTCCTTCATTCTCTTTGTGTTTCATCGAGGCGA
TGCAGAAAATGAAATGTGAAGATGGAGATTGGCATTACGAAATAGTTGAC
GAGCCTGGAAAGGGGGAAGGGGGAAGGGGGGATGGACGAGGGATCCCTCC
TGATCAGAATCATGGAGCGAGGGAAGGTGGGATGGAGGGAGGAAGAGTTT
GTGTAGTAGTTTTTTGGGACTTAGACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGTATACCTACTCTCTCCCCTTTTATCCCCTTGTCTTTCTCATCTTA
GTTATTCCTCCCTGT

protein sequence of jgi.p|Nanoce1779_2|168280

>mRNA_7765-protein ID=mRNA_7765-protein|Name=jgi.p|Nanoce1779_2|168280|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MKIQWDPYTGQFLDLGDDVEEIGVPSRNPSSSSSSSSPTTTTPSGECEQG
SKATGVKTEDLQVVGGNIGKANAYIAQKLMEASIEEGTGIVDALMKELDD
LDLAEGEENTWPKITENMQSVLRNEEAAAYETVCRNVDLTRATTVLVYLR
ESAMAPALKECLKARGGSSREVVLGGGGGGGAAAAAAAAAAAAVDVKGAS
VLVLLPDTKGGGSVMEAPAVEALIAAAAEGGGLRHVVYLSSLGSEKALFQ
FSFDSMSGVLEKKKAVEQSIKRLSKSLGYNFSIIRVGSLGPVKSGEEALN
LSPGDPFNGGATNYATAAQAVVQSIALPMALNASFSVINGKGTSPPTDAG
WRDSMLKLVGPEVLRLSFKETDVLGMRMSLRAWALQYMEGERRLTTKVFA
VRTPLGAKIYFLPTMQSLGPGFREEKAIEKARMKGEAILGGQKPTRPILE
GGLEVCVEEVTEAGKEGDKRVRVRRIAMEEGTVVKAMSERELLDSLKAEI
ESTEKSAKSGRRVGGGTPPV*

mRNA from alignment at scaffold_21:271083..273274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7765 ID=mRNA_7765|Name=jgi.p|Nanoce1779_2|168280|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at scaffold_21:271083..273274+ (Nannochloropsis oceanica)
TCCCTTCCTCCTCGAACCACTCTCCCTTCCCTCCCTTCCCCCTTGCTCCA
CAAAAACAGACCCGACGCTCTCCCTCCACCTCCTTCCCCCCCAGCTCCTC
CTCTTCCTCCTCGCTTCAAATGAAAATCCAATGGGACCCATACACGGGGC
AATTTTTGGACCTAGGCGATGACGTGGAAGAGATCGGCGTTCCCTCCCGT
AATCCGTCTTCCTCCTCGTCCTCGTCCTCTCCCACCACCACCACTCCTTC
GGGTGAATGTGAACAAGGAAGTAAAGCCACAGGTGTGAAGACGGAGGACT
TGCAGGTGGTTGGTGGAAATATAGGCAAAGCGAATGCGTACATTGCTCAG
AAGCTGATGGAGGCGTCGATTGAGGAGGGGACGGGGATAGTAGATGCCTT
GATGAAGGTACGCTTTTTGTTCCAATTCAATTTTGTTTCAGACATTCGGG
GTTGATGGGGGAGGGGCGGGGGGGGGGGGGGATTTTCACGCTGCCCCATA
ATGCAGAGTTTCACTCTCTCACTCCTGACGCATGGCTGACCCTCCCTCTC
TCCCTTATTACCTCCCTCCCTCCCTCCCTCTCAGGAGTTGGACGACCTGG
ATCTAGCTGAAGGCGAAGAAAACACCTGGCCAAAAATCACGGAGAACATG
CAATCTGTTTTGAGGAACGAAGAAGCCGCTGCTTATGAAACAGTTTGTCG
CAACGTGGACCTCACGAGAGCTACCACAGTGTTAGTTTATTTGAGGGAAA
GTGCCATGGCGCCTGCGCTCAAGGAGTGCCTGAAAGCAAGAGGGGGGTCA
TCGAGGGAGGTCGTGCTTGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGACGTGAAAGGAGCGAGTGTAT
TGGTGTTGTTGCCGGATACAAAGGGGGGAGGAAGTGTGATGGAAGCACCT
GCGGTAGAGGCGCTGATTGCAGCAGCGGCGGAAGGGGGGGGGTTGCGACA
TGTGGTTTATTTATCGAGCTTGGGGTCAGAAAAAGCATTGTTTCAATTTT
CCTTTGATAGTATGAGTGGGGTGCTGGAGAAAAAGAAGGCAGTGGAACAG
AGCATCAAGAGATTGAGTAAAAGTTTGGGTTATAACTTTTCCATCATCCG
GGTTGGATCGCTGGGGCCGGTGAAGAGCGGGGAGGAGGCGCTGAACCTCT
CCCCCGGCGACCCTTTCAATGGGGGGGCCACGAACTACGCGACTGCGGCC
CAGGCGGTGGTGCAGTCCATCGCGTTGCCCATGGCGTTGAACGCGTCCTT
CTCGGTGATCAATGGCAAGGGCACCAGCCCGCCGACCGATGCGGGATGGA
GGGACAGCATGCTCAAACTGGTGGGACCGGAGGTGCTGCGCTTGTCCTTC
AAGGAGACCGACGTGTTGGGCATGCGCATGTCACTCCGAGCGTGGGCTCT
GCAGTACATGGAGGGGGAAAGGAGGCTGACCACCAAGGTTTTCGCTGTCA
GGACGCCCCTGGGTGCCAAGATCTATTTTTTGCCCACCATGCAGAGCCTC
GGGCCGGGCTTTAGGGAGGAAAAAGCGATTGAGAAGGCCCGGATGAAGGG
GGAGGCGATTCTGGGGGGGCAGAAACCGACGAGGCCAATTCTAGAAGGGG
GGTTGGAGGTGTGTGTGGAGGAAGTGACGGAGGCAGGGAAAGAGGGAGAC
AAGAGGGTGCGGGTGAGGAGGATTGCAATGGAGGAGGGTACGGTTGTGAA
GGCAATGTCGGAGAGGGAGCTGTTGGATAGTCTCAAGGCTGAAATTGAGA
GCACGGAAAAATCGGCCAAGTCGGGAAGGAGGGTTGGGGGAGGAACACCG
CCTGTATAGAGTGCCCTCCCTCCCTCCCTCACTCACTCCCTTCCTTCCTT
CATTCTCTTTGTGTTTCATCGAGGCGATGCAGAAAATGAAATGTGAAGAT
GGAGATTGGCATTACGAAATAGTTGACGAGCCTGGAAAGGGGGAAGGGGG
AAGGGGGGATGGACGAGGGATCCCTCCTGATCAGAATCATGGAGCGAGGG
AAGGTGGGATGGAGGGAGGAAGAGTTTGTGTAGTAGTTTTTTGGGACTTA
GACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATACCTACTCTCTCCCC
TTTTATCCCCTTGTCTTTCTCATCTTAGTTATTCCTCCCTGT

Coding sequence (CDS) from alignment at scaffold_21:271083..273274+

>mRNA_7765 ID=mRNA_7765|Name=jgi.p|Nanoce1779_2|168280|organism=Nannochloropsis oceanica|type=CDS|length=3126bp|location=Sequence derived from alignment at scaffold_21:271083..273274+ (Nannochloropsis oceanica)
ATGAAAATCCAATGGGACCCATACACGGGGCAATTTTTGGACCTAGGCGA
TGACGTGGAAGAGATCGGCGTTCCCTCCCGTAATCCGTCTTCCTCCTCGT
CCTCGTCCTCTCCCACCACCACCACTCCTTCGGGTGAATGTGAACAAGGA
AGTAAAGCCACAGGTGTGAAGACGGAGGACTTGCAGGTGGTTGGTGGAAA
TATAGGCAAAGCGAATGCGTACATTGCTCAGAAGCTGATGGAGGCGTCGA
TTGAGGAGGGGACGGGGATAGTAGATGCCTTGATGAAGGAGTTGGACGAC
CTGGATCTAGCTGAAGGCGAAGAAAACACCTGGCCAAAAATCACGGAGAA
CATGCAATCTGTTTTGAGGAACGAAGAAGCCGCTGCTTATGAAACAGTTT
GTCGCAACGTGGACCTCACGAGAGCTACCACAGTGTTAGTTTATTTGAGG
GAAAGTGCCATGGCGCCTGCGCTCAAGGAGTGCCTGAAAGCAAGAGGGGG
GTCATCGAGGGAGGTCGTGCTTGGAGGAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGACGTGAAAGGAGCGAGT
GTATTGGTGTTGTTGCCGGATACAAAGGGGGGAGGAAGTGTGATGGAAGC
ACCTGCGGTAGAGGCGCTGATTGCAGCAGCGGCGGAAGGGGGGGGGTTGC
GACATGTGGTTTATTTATCGAGCTTGGGGTCAGAAAAAGCATTGTTTCAA
TTTTCCTTTGATAGTATGAGTGGGGTGCTGGAGAAAAAGAAGGCAGTGGA
ACAGAGCATCAAGAGATTGAGTAAAAGTTTGGGTTATAACTTTTCCATCA
TCCGGGTTGGATCGCTGGGGCCGGTGAAGAGCGGGGAGGAGGCGCTGAAC
CTCTCCCCCGGCGACCCTTTCAATGGGGGGGCCACGAACTACGCGACTGC
GGCCCAGGCGGTGGTGCAGTCCATCGCGTTGCCCATGGCGTTGAACGCGT
CCTTCTCGGTGATCAATGGCAAGGGCACCAGCCCGCCGACCGATGCGGGA
TGGAGGGACAGCATGCTCAAACTGGTGGGACCGGAGGTGCTGCGCTTGTC
CTTCAAGGAGACCGACGTGTTGGGCATGCGCATGTCACTCCGAGCGTGGG
CTCTGCAGTACATGGAGGGGGAAAGGAGGCTGACCACCAAGGTTTTCGCT
GTCAGGACGCCCCTGGGTGCCAAGATCTATTTTTTGCCCACCATGCAGAG
CCTCGGGCCGGGCTTTAGGGAGGAAAAAGCGATTGAGAAGGCCCGGATGA
AGGGGGAGGCGATTCTGGGGGGGCAGAAACCGACGAGGCCAATTCTAGAA
GGGGGGTTGGAGGTGTGTGTGGAGGAAGTGACGGAGGCAGGGAAAGAGGG
AGACAAGAGGGTGCGGGTGAGGAGGATTGCAATGGAGGAGGGTACGGTTG
TGAAGGCAATGTCGGAGAGGGAGCTGTTGGATAGTCTCAAGGCTGAAATT
GAGAGCACGGAAAAATCGGCCAAGTCGGGAAGGAGGGTTGGGGGAGGAAC
ACCGCCTGTATAGATGAAAATCCAATGGGACCCATACACGGGGCAATTTT
TGGACCTAGGCGATGACGTGGAAGAGATCGGCGTTCCCTCCCGTAATCCG
TCTTCCTCCTCGTCCTCGTCCTCTCCCACCACCACCACTCCTTCGGGTGA
ATGTGAACAAGGAAGTAAAGCCACAGGTGTGAAGACGGAGGACTTGCAGG
TGGTTGGTGGAAATATAGGCAAAGCGAATGCGTACATTGCTCAGAAGCTG
ATGGAGGCGTCGATTGAGGAGGGGACGGGGATAGTAGATGCCTTGATGAA
GGAGTTGGACGACCTGGATCTAGCTGAAGGCGAAGAAAACACCTGGCCAA
AAATCACGGAGAACATGCAATCTGTTTTGAGGAACGAAGAAGCCGCTGCT
TATGAAACAGTTTGTCGCAACGTGGACCTCACGAGAGCTACCACAGTGTT
AGTTTATTTGAGGGAAAGTGCCATGGCGCCTGCGCTCAAGGAGTGCCTGA
AAGCAAGAGGGGGGTCATCGAGGGAGGTCGTGCTTGGAGGAGGAGGAGGA
GGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGACGT
GAAAGGAGCGAGTGTATTGGTGTTGTTGCCGGATACAAAGGGGGGAGGAA
GTGTGATGGAAGCACCTGCGGTAGAGGCGCTGATTGCAGCAGCGGCGGAA
GGGGGGGGGTTGCGACATGTGGTTTATTTATCGAGCTTGGGGTCAGAAAA
AGCATTGTTTCAATTTTCCTTTGATAGTATGAGTGGGGTGCTGGAGAAAA
AGAAGGCAGTGGAACAGAGCATCAAGAGATTGAGTAAAAGTTTGGGTTAT
AACTTTTCCATCATCCGGGTTGGATCGCTGGGGCCGGTGAAGAGCGGGGA
GGAGGCGCTGAACCTCTCCCCCGGCGACCCTTTCAATGGGGGGGCCACGA
ACTACGCGACTGCGGCCCAGGCGGTGGTGCAGTCCATCGCGTTGCCCATG
GCGTTGAACGCGTCCTTCTCGGTGATCAATGGCAAGGGCACCAGCCCGCC
GACCGATGCGGGATGGAGGGACAGCATGCTCAAACTGGTGGGACCGGAGG
TGCTGCGCTTGTCCTTCAAGGAGACCGACGTGTTGGGCATGCGCATGTCA
CTCCGAGCGTGGGCTCTGCAGTACATGGAGGGGGAAAGGAGGCTGACCAC
CAAGGTTTTCGCTGTCAGGACGCCCCTGGGTGCCAAGATCTATTTTTTGC
CCACCATGCAGAGCCTCGGGCCGGGCTTTAGGGAGGAAAAAGCGATTGAG
AAGGCCCGGATGAAGGGGGAGGCGATTCTGGGGGGGCAGAAACCGACGAG
GCCAATTCTAGAAGGGGGGTTGGAGGTGTGTGTGGAGGAAGTGACGGAGG
CAGGGAAAGAGGGAGACAAGAGGGTGCGGGTGAGGAGGATTGCAATGGAG
GAGGGTACGGTTGTGAAGGCAATGTCGGAGAGGGAGCTGTTGGATAGTCT
CAAGGCTGAAATTGAGAGCACGGAAAAATCGGCCAAGTCGGGAAGGAGGG
TTGGGGGAGGAACACCGCCTGTATAG

Synonyms

Publications