|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 559029 |
| Track | FilteredModels2 |
| ProteinId | 558943 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:259387..261841 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7761 ID=mRNA_7761|Name=jgi.p|Nanoce1779_2|558943|organism=Nannochloropsis oceanica|type=mRNA|length=2342bp
ACAGGGTATCTAAAACGACCAGGACGCCCATCTACACTCTCATAATCGAC
AACAGTGCCTGGTTGTGTTGAGCGAGAGCAAGCAAGCAGGAGACTCGAAA
GCCAGCAGCAGCAGATAACGCAGCAGCAGAAGCACCATCTTCCACGGCAA
AACAGTAAATGCGCACGTGTGCTCTTTTGTCCGCGGCGCTCTTAGCCACA
GCGCAGCAAATGGGCGGCCTGGCCTTTGTGTTCAGGCCAACAAACCGATG
CAGCATAAGAGTAATACGTCAACTTGGGGGCCGGCAGTCGCTCGAACGGT
CAAAATCAGTATCCTTCCCAGCGCCGCTTTGCGCCATATCCACGGCCTGT
GGCAGCAGCAGCATCACCGCAGGCAGCAGCAGCGACGGTAGAGGAGGTCG
CAGCAGTAGGAGTAGCCGTTTGGGTGGCGGCAGCAGTAAGATGCCCTTCA
TGAGACCGCTGAACTCGGTGGTAGAAGGGCGAGGGGAGCGGATCAAGATG
GCGCGAGGCGACGATGACAGAGACAGTGGAGCTGCTTCAGCAGCCCCCGT
CGTGGTGGATGCAGTTCAGAATTCTGGTATAGTGCCAGCCACAGCCACAG
TGGATAGCATCCTTAGACCACCGCCACCACCAGCGCCAGCAGCAGGGGAT
AAAGACGAGGACGGTGTGGTGGGCGCGGGAGGTGAGGGAGCACCTGACTT
GTCGGCGGAGCTGGCACGGTTGGAGGAGTTGGGGCAGGATATATTCAAGA
TGGCGGGACGGGAGTTTAAGATTACGTCGTATGTTGAGCTCTCGCGGGTG
CTGTTTGAGGATTTGAGTCTTCCTGTGGTGAAGCAGCCGAGCAATAAGGT
TTTGGGTGGGTATTACTCCACCTCGAATGCTGTGCTCAATGAGCTGTCTG
CCATGGGGTACGAGCTCCCAGCCAAGGTACTGGATTATCGGGCGCTACTA
TATTTGATTCGTAGCAAGCAGGGGAAGAAGAAGAAGAAGAAGACAGCCGG
GGAGAGGAAGGACTCTGCGGGGTCCGACAAGGACGTAGCAGGTGGAGGGG
CGGGAGGTGTGGGGGGAGCGAAGGGGGAGCGAATGTCACCGGAGGAGAAG
TTGATGATGAGTATGTTGAAAGAAGAGAGTGGTATCGATGCCTTGGATAG
GACGATGGTGCGAGTGGGTGTAGATATAAGCAAGGTGATGGAGAGGGTGC
AGACGATGACTAATGGCGGGGGGCTACGGACTCCGGGAGGAGCGAGCACG
GAGGAGAAGGACGAGACTTTCATCCCGGAAGAAGGAGGATTTGAAGAGCC
TGATTTGGCGGAGCCAATCCCAATGTTGATGGGGACAGGGGAAGAGGATC
TGGAGGGGGAGAAACCGATGTCATTGTATGACAAGGGGTGGGGAGTCGCG
AATAATTTTGTGCTGATTGATGCCGCGAGCATCATTTATAGGACTTTTCA
CGCAATGCCTAAGCTGACGGGGCCTGATGGAACGCCGATCAATGCTGTCC
TTGGGTTTTGTAATGTCTTGAACAAGCTCTTACTCCCCGCCATGGTCCAG
AGTCGCATCCGGCCCTATGTGCTCGTAGTCTTTGATGGCCACGTGCCCCT
CCACCGACAAACCGCACTCTACCCCACCTATAAAGCCAATCGTGCTCGCA
CCCCGGAAGACCTCATCTCCCAATTTCCTCTAGCCCAGGAAGCGGCAATT
GCGTTTGGCGCCATCAATGTGACGGCGCCGGACGGATTGGAAGCTGATGA
TGTCATTGCCACCTTTGCCCAAGTGGCAATTGAGCAGGTACCCGATATGA
AAGTCACGATTGTGAGTTCAGATAAAGATTTTTTGCAGCTGGTAGGGGAT
GATGTGAGTGTCTTCGATCCATTTAACATGGCGAGGTTGGGTCCGAATGA
GGTCTTTGAGAAGTATGGGTTGGAGGCTGGGCAGCTGCTTGATTATTTCG
CGATGGTGGGGGATGCGGCCGACAACGTGCCGGGCATCCCTGGGATAGGT
CCTAAGACGGCTCAGGAGCTGTTGGAGGAGTTCGAGAGTTTCGAGGAGCT
ATGGGAGTTCAAAGATGAGGTGGAATCGCCTAGGTTGAGGAAAATCGTGG
AGGACAATGTGGAGAAGTTTTTGATGTCGCGACGTCTGATTCGATTGAAG
AAATTGTTTGAGCCGCCGAGCATGACGTTGATGCCGAGAGCAAGGTTTTC
GGAGGCGAAGATGCAGGCTTTCTGTGCCAAATACGGATTTAAGACGCTGG
CGAGCCGGGTTACGAGTACACTGGCCAAGGCCGAGGCGGCGAAGGAGGCG
GCGGCGGAGGAGGGGGGGGTCGGGAGGGGGTTCTTTTCGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|558943 >mRNA_7761-protein ID=mRNA_7761-protein|Name=jgi.p|Nanoce1779_2|558943|organism=Nannochloropsis oceanica|type=polypeptide|length=728bp
MRTCALLSAALLATAQQMGGLAFVFRPTNRCSIRVIRQLGGRQSLERSKS
VSFPAPLCAISTACGSSSITAGSSSDGRGGRSSRSSRLGGGSSKMPFMRP
LNSVVEGRGERIKMARGDDDRDSGAASAAPVVVDAVQNSGIVPATATVDS
ILRPPPPPAPAAGDKDEDGVVGAGGEGAPDLSAELARLEELGQDIFKMAG
REFKITSYVELSRVLFEDLSLPVVKQPSNKVLGGYYSTSNAVLNELSAMG
YELPAKVLDYRALLYLIRSKQGKKKKKKTAGERKDSAGSDKDVAGGGAGG
VGGAKGERMSPEEKLMMSMLKEESGIDALDRTMVRVGVDISKVMERVQTM
TNGGGLRTPGGASTEEKDETFIPEEGGFEEPDLAEPIPMLMGTGEEDLEG
EKPMSLYDKGWGVANNFVLIDAASIIYRTFHAMPKLTGPDGTPINAVLGF
CNVLNKLLLPAMVQSRIRPYVLVVFDGHVPLHRQTALYPTYKANRARTPE
DLISQFPLAQEAAIAFGAINVTAPDGLEADDVIATFAQVAIEQVPDMKVT
IVSSDKDFLQLVGDDVSVFDPFNMARLGPNEVFEKYGLEAGQLLDYFAMV
GDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDN
VEKFLMSRRLIRLKKLFEPPSMTLMPRARFSEAKMQAFCAKYGFKTLASR
VTSTLAKAEAAKEAAAEEGGVGRGFFS* back to topmRNA from alignment at scaffold_21:259387..261841- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7761 ID=mRNA_7761|Name=jgi.p|Nanoce1779_2|558943|organism=Nannochloropsis oceanica|type=mRNA|length=2455bp|location=Sequence derived from alignment at scaffold_21:259387..261841- (Nannochloropsis oceanica)
ACAGGGTATCTAAAACGACCAGGACGCCCATCTACACTCTCATAATCGAC
AACAGTGCCTGGTTGTGTTGAGCGAGAGCAAGCAAGCAGGAGACTCGAAA
GCCAGCAGCAGCAGATAACGCAGCAGCAGAAGCACCATCTTCCACGGCAA
AACAGTAAATGCGCACGTGTGCTCTTTTGTCCGCGGCGCTCTTAGCCACA
GCGCAGCAAATGGGCGGCCTGGCCTTTGTGTTCAGGCCAACAAACCGATG
CAGCATAAGAGTAATACGTCAACTTGGGGTGAGTTACCATGTCCTCTAGT
CCCACCCATCTTCCACCACTTCACGGTATACGTCTAAAAGGCCAGTCTGA
TCACCCTTGTCCTATTTCATTATTATCCCACCATTTCACAGGGCCGGCAG
TCGCTCGAACGGTCAAAATCAGTATCCTTCCCAGCGCCGCTTTGCGCCAT
ATCCACGGCCTGTGGCAGCAGCAGCATCACCGCAGGCAGCAGCAGCGACG
GTAGAGGAGGTCGCAGCAGTAGGAGTAGCCGTTTGGGTGGCGGCAGCAGT
AAGATGCCCTTCATGAGACCGCTGAACTCGGTGGTAGAAGGGCGAGGGGA
GCGGATCAAGATGGCGCGAGGCGACGATGACAGAGACAGTGGAGCTGCTT
CAGCAGCCCCCGTCGTGGTGGATGCAGTTCAGAATTCTGGTATAGTGCCA
GCCACAGCCACAGTGGATAGCATCCTTAGACCACCGCCACCACCAGCGCC
AGCAGCAGGGGATAAAGACGAGGACGGTGTGGTGGGCGCGGGAGGTGAGG
GAGCACCTGACTTGTCGGCGGAGCTGGCACGGTTGGAGGAGTTGGGGCAG
GATATATTCAAGATGGCGGGACGGGAGTTTAAGATTACGTCGTATGTTGA
GCTCTCGCGGGTGCTGTTTGAGGATTTGAGTCTTCCTGTGGTGAAGCAGC
CGAGCAATAAGGTTTTGGGTGGGTATTACTCCACCTCGAATGCTGTGCTC
AATGAGCTGTCTGCCATGGGGTACGAGCTCCCAGCCAAGGTACTGGATTA
TCGGGCGCTACTATATTTGATTCGTAGCAAGCAGGGGAAGAAGAAGAAGA
AGAAGACAGCCGGGGAGAGGAAGGACTCTGCGGGGTCCGACAAGGACGTA
GCAGGTGGAGGGGCGGGAGGTGTGGGGGGAGCGAAGGGGGAGCGAATGTC
ACCGGAGGAGAAGTTGATGATGAGTATGTTGAAAGAAGAGAGTGGTATCG
ATGCCTTGGATAGGACGATGGTGCGAGTGGGTGTAGATATAAGCAAGGTG
ATGGAGAGGGTGCAGACGATGACTAATGGCGGGGGGCTACGGACTCCGGG
AGGAGCGAGCACGGAGGAGAAGGACGAGACTTTCATCCCGGAAGAAGGAG
GATTTGAAGAGCCTGATTTGGCGGAGCCAATCCCAATGTTGATGGGGACA
GGGGAAGAGGATCTGGAGGGGGAGAAACCGATGTCATTGTATGACAAGGG
GTGGGGAGTCGCGAATAATTTTGTGCTGATTGATGCCGCGAGCATCATTT
ATAGGACTTTTCACGCAATGCCTAAGCTGACGGGGCCTGATGGAACGCCG
ATCAATGCTGTCCTTGGGTTTTGTAATGTCTTGAACAAGCTCTTACTCCC
CGCCATGGTCCAGAGTCGCATCCGGCCCTATGTGCTCGTAGTCTTTGATG
GCCACGTGCCCCTCCACCGACAAACCGCACTCTACCCCACCTATAAAGCC
AATCGTGCTCGCACCCCGGAAGACCTCATCTCCCAATTTCCTCTAGCCCA
GGAAGCGGCAATTGCGTTTGGCGCCATCAATGTGACGGCGCCGGACGGAT
TGGAAGCTGATGATGTCATTGCCACCTTTGCCCAAGTGGCAATTGAGCAG
GTACCCGATATGAAAGTCACGATTGTGAGTTCAGATAAAGATTTTTTGCA
GCTGGTAGGGGATGATGTGAGTGTCTTCGATCCATTTAACATGGCGAGGT
TGGGTCCGAATGAGGTCTTTGAGAAGTATGGGTTGGAGGCTGGGCAGCTG
CTTGATTATTTCGCGATGGTGGGGGATGCGGCCGACAACGTGCCGGGCAT
CCCTGGGATAGGTCCTAAGACGGCTCAGGAGCTGTTGGAGGAGTTCGAGA
GTTTCGAGGAGCTATGGGAGTTCAAAGATGAGGTGGAATCGCCTAGGTTG
AGGAAAATCGTGGAGGACAATGTGGAGAAGTTTTTGATGTCGCGACGTCT
GATTCGATTGAAGAAATTGTTTGAGCCGCCGAGCATGACGTTGATGCCGA
GAGCAAGGTTTTCGGAGGCGAAGATGCAGGCTTTCTGTGCCAAATACGGA
TTTAAGACGCTGGCGAGCCGGGTTACGAGTACACTGGCCAAGGCCGAGGC
GGCGAAGGAGGCGGCGGCGGAGGAGGGGGGGGTCGGGAGGGGGTTCTTTT
CGTAG back to topCoding sequence (CDS) from alignment at scaffold_21:259387..261841- >mRNA_7761 ID=mRNA_7761|Name=jgi.p|Nanoce1779_2|558943|organism=Nannochloropsis oceanica|type=CDS|length=4368bp|location=Sequence derived from alignment at scaffold_21:259387..261841- (Nannochloropsis oceanica)
GGCCGGCAGTCGCTCGAACGGTCAAAATCAGTATCCTTCCCAGCGCCGCT
TTGCGCCATATCCACGGCCTGTGGCAGCAGCAGCATCACCGCAGGCAGCA
GCAGCGACGGTAGAGGAGGTCGCAGCAGTAGGAGTAGCCGTTTGGGTGGC
GGCAGCAGTAAGATGCCCTTCATGAGACCGCTGAACTCGGTGGTAGAAGG
GCGAGGGGAGCGGATCAAGATGGCGCGAGGCGACGATGACAGAGACAGTG
GAGCTGCTTCAGCAGCCCCCGTCGTGGTGGATGCAGTTCAGAATTCTGGT
ATAGTGCCAGCCACAGCCACAGTGGATAGCATCCTTAGACCACCGCCACC
ACCAGCGCCAGCAGCAGGGGATAAAGACGAGGACGGTGTGGTGGGCGCGG
GAGGTGAGGGAGCACCTGACTTGTCGGCGGAGCTGGCACGGTTGGAGGAG
TTGGGGCAGGATATATTCAAGATGGCGGGACGGGAGTTTAAGATTACGTC
GTATGTTGAGCTCTCGCGGGTGCTGTTTGAGGATTTGAGTCTTCCTGTGG
TGAAGCAGCCGAGCAATAAGGTTTTGGGTGGGTATTACTCCACCTCGAAT
GCTGTGCTCAATGAGCTGTCTGCCATGGGGTACGAGCTCCCAGCCAAGGT
ACTGGATTATCGGGCGCTACTATATTTGATTCGTAGCAAGCAGGGGAAGA
AGAAGAAGAAGAAGACAGCCGGGGAGAGGAAGGACTCTGCGGGGTCCGAC
AAGGACGTAGCAGGTGGAGGGGCGGGAGGTGTGGGGGGAGCGAAGGGGGA
GCGAATGTCACCGGAGGAGAAGTTGATGATGAGTATGTTGAAAGAAGAGA
GTGGTATCGATGCCTTGGATAGGACGATGGTGCGAGTGGGTGTAGATATA
AGCAAGGTGATGGAGAGGGTGCAGACGATGACTAATGGCGGGGGGCTACG
GACTCCGGGAGGAGCGAGCACGGAGGAGAAGGACGAGACTTTCATCCCGG
AAGAAGGAGGATTTGAAGAGCCTGATTTGGCGGAGCCAATCCCAATGTTG
ATGGGGACAGGGGAAGAGGATCTGGAGGGGGAGAAACCGATGTCATTGTA
TGACAAGGGGTGGGGAGTCGCGAATAATTTTGTGCTGATTGATGCCGCGA
GCATCATTTATAGGACTTTTCACGCAATGCCTAAGCTGACGGGGCCTGAT
GGAACGCCGATCAATGCTGTCCTTGGGTTTTGTAATGTCTTGAACAAGCT
CTTACTCCCCGCCATGGTCCAGAGTCGCATCCGGCCCTATGTGCTCGTAG
TCTTTGATGGCCACGTGCCCCTCCACCGACAAACCGCACTCTACCCCACC
TATAAAGCCAATCGTGCTCGCACCCCGGAAGACCTCATCTCCCAATTTCC
TCTAGCCCAGGAAGCGGCAATTGCGTTTGGCGCCATCAATGTGACGGCGC
CGGACGGATTGGAAGCTGATGATGTCATTGCCACCTTTGCCCAAGTGGCA
ATTGAGCAGGTACCCGATATGAAAGTCACGATTGTGAGTTCAGATAAAGA
TTTTTTGCAGCTGGTAGGGGATGATGTGAGTGTCTTCGATCCATTTAACA
TGGCGAGGTTGGGTCCGAATGAGGTCTTTGAGAAGTATGGGTTGGAGGCT
GGGCAGCTGCTTGATTATTTCGCGATGGTGGGGGATGCGGCCGACAACGT
GCCGGGCATCCCTGGGATAGGTCCTAAGACGGCTCAGGAGCTGTTGGAGG
AGTTCGAGAGTTTCGAGGAGCTATGGGAGTTCAAAGATGAGGTGGAATCG
CCTAGGTTGAGGAAAATCGTGGAGGACAATGTGGAGAAGTTTTTGATGTC
GCGACGTCTGATTCGATTGAAGAAATTGTTTGAGCCGCCGAGCATGACGT
TGATGCCGAGAGCAAGGTTTTCGGAGGCGAAGATGCAGGCTTTCTGTGCC
AAATACGGATTTAAGACGCTGGCGAGCCGGGTTACGAGTACACTGGCCAA
GGCCGAGGCGGCGAAGGAGGCGGCGGCGGAGGAGGGGGGGGTCGGGAGGG
GGTTCTTTTCGTAGATGCGCACGTGTGCTCTTTTGTCCGCGGCGCTCTTA
GCCACAGCGCAGCAAATGGGCGGCCTGGCCTTTGTGTTCAGGCCAACAAA
CCGATGCAGCATAAGAGTAATACGTCAACTTGGGGGCCGGCAGTCGCTCG
AACGGTCAAAATCAGTATCCTTCCCAGCGCCGCTTTGCGCCATATCCACG
GCCTGTGGCAGCAGCAGCATCACCGCAGGCAGCAGCAGCGACGGTAGAGG
AGGTCGCAGCAGTAGGAGTAGCCGTTTGGGTGGCGGCAGCAGTAAGATGC
CCTTCATGAGACCGCTGAACTCGGTGGTAGAAGGGCGAGGGGAGCGGATC
AAGATGGCGCGAGGCGACGATGACAGAGACAGTGGAGCTGCTTCAGCAGC
CCCCGTCGTGGTGGATGCAGTTCAGAATTCTGGTATAGTGCCAGCCACAG
CCACAGTGGATAGCATCCTTAGACCACCGCCACCACCAGCGCCAGCAGCA
GGGGATAAAGACGAGGACGGTGTGGTGGGCGCGGGAGGTGAGGGAGCACC
TGACTTGTCGGCGGAGCTGGCACGGTTGGAGGAGTTGGGGCAGGATATAT
TCAAGATGGCGGGACGGGAGTTTAAGATTACGTCGTATGTTGAGCTCTCG
CGGGTGCTGTTTGAGGATTTGAGTCTTCCTGTGGTGAAGCAGCCGAGCAA
TAAGGTTTTGGGTGGGTATTACTCCACCTCGAATGCTGTGCTCAATGAGC
TGTCTGCCATGGGGTACGAGCTCCCAGCCAAGGTACTGGATTATCGGGCG
CTACTATATTTGATTCGTAGCAAGCAGGGGAAGAAGAAGAAGAAGAAGAC
AGCCGGGGAGAGGAAGGACTCTGCGGGGTCCGACAAGGACGTAGCAGGTG
GAGGGGCGGGAGGTGTGGGGGGAGCGAAGGGGGAGCGAATGTCACCGGAG
GAGAAGTTGATGATGAGTATGTTGAAAGAAGAGAGTGGTATCGATGCCTT
GGATAGGACGATGGTGCGAGTGGGTGTAGATATAAGCAAGGTGATGGAGA
GGGTGCAGACGATGACTAATGGCGGGGGGCTACGGACTCCGGGAGGAGCG
AGCACGGAGGAGAAGGACGAGACTTTCATCCCGGAAGAAGGAGGATTTGA
AGAGCCTGATTTGGCGGAGCCAATCCCAATGTTGATGGGGACAGGGGAAG
AGGATCTGGAGGGGGAGAAACCGATGTCATTGTATGACAAGGGGTGGGGA
GTCGCGAATAATTTTGTGCTGATTGATGCCGCGAGCATCATTTATAGGAC
TTTTCACGCAATGCCTAAGCTGACGGGGCCTGATGGAACGCCGATCAATG
CTGTCCTTGGGTTTTGTAATGTCTTGAACAAGCTCTTACTCCCCGCCATG
GTCCAGAGTCGCATCCGGCCCTATGTGCTCGTAGTCTTTGATGGCCACGT
GCCCCTCCACCGACAAACCGCACTCTACCCCACCTATAAAGCCAATCGTG
CTCGCACCCCGGAAGACCTCATCTCCCAATTTCCTCTAGCCCAGGAAGCG
GCAATTGCGTTTGGCGCCATCAATGTGACGGCGCCGGACGGATTGGAAGC
TGATGATGTCATTGCCACCTTTGCCCAAGTGGCAATTGAGCAGGTACCCG
ATATGAAAGTCACGATTGTGAGTTCAGATAAAGATTTTTTGCAGCTGGTA
GGGGATGATGTGAGTGTCTTCGATCCATTTAACATGGCGAGGTTGGGTCC
GAATGAGGTCTTTGAGAAGTATGGGTTGGAGGCTGGGCAGCTGCTTGATT
ATTTCGCGATGGTGGGGGATGCGGCCGACAACGTGCCGGGCATCCCTGGG
ATAGGTCCTAAGACGGCTCAGGAGCTGTTGGAGGAGTTCGAGAGTTTCGA
GGAGCTATGGGAGTTCAAAGATGAGGTGGAATCGCCTAGGTTGAGGAAAA
TCGTGGAGGACAATGTGGAGAAGTTTTTGATGTCGCGACGTCTGATTCGA
TTGAAGAAATTGTTTGAGCCGCCGAGCATGACGTTGATGCCGAGAGCAAG
GTTTTCGGAGGCGAAGATGCAGGCTTTCTGTGCCAAATACGGATTTAAGA
CGCTGGCGAGCCGGGTTACGAGTACACTGGCCAAGGCCGAGGCGGCGAAG
GAGGCGGCGGCGGAGGAGGGGGGGGTCGGGAGGGGGTTCTTTTCGTAGAT
GCGCACGTGTGCTCTTTTGTCCGCGGCGCTCTTAGCCACAGCGCAGCAAA
TGGGCGGCCTGGCCTTTGTGTTCAGGCCAACAAACCGATGCAGCATAAGA
GTAATACGTCAACTTGGG back to top
|