jgi.p|Nanoce1779_2|599924, mRNA_7760 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599924
Unique Name	mRNA_7760
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1790
Alignment location	scaffold_21:256443..258699 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600010
Track	FilteredModels2
ProteinId	599924

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:256443..258699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599924	gene_7760	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599924	mRNA_7760-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7760	CDS_7760	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:256443..258699+
coding sequence from alignment at scaffold_21:256443..258699+

mRNA sequence

>mRNA_7760 ID=mRNA_7760|Name=jgi.p|Nanoce1779_2|599924|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGC
GAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGT
CCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAG
CGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTCAGATTTTCGGTCCT
TACTTAGGGCTTGGAATAGCAGCAGGCGTGTTTGGCTTAGCTCACAAAAT
GGGGCCATCCGATGTCCTTTTTATTACCCTTTCAGGGGCATATATGGGGG
GCATCTTCTTGCTCTATGGGGACTTGACAATTACTATTGCGTTGCATGCG
AGTTATGATTTTTTGATTTTGTGTGGAGCATATCTGAGGGCGAAGAGGAG
GATTTCGGAGGGGAAAGGGGGGATGATGGTGTTGGAAGAGGAAAAGGAAA
GGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTGGTGGAGAAGAATAGTTT
TGTCTCATTTTTCTTCATGGGAAATATAGAACAAAAAAGGAGATGAAAAA
TGGAGCGAGTGAAAGGTAGGCTAGATCATATTATTGTTTTCTATTTGTAC
ATTGTGTGCAGTGTAACTGATTGGTGCGGTGACATTAACAGCAGCAGCAG
CAGCAGCTGTGCAGTACAGACATATAGGTGGATAAGCGTGAGGACCATGA
GATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTTAGTTTGATGCAAAAATG
CATGCGTCAGAAGTGTTAGAAGAAAGATAGTCATCGGCGAGTCACGTACG
CATAGAGAGAGAAGTCAAGAACATCGGCAGTGAAATACCACGCTTCCGGT
GGGGGCAATGACATTCATTGCTCTCTTGCGAGCGAGACAATTTGTCTCGG
TAAAAGTCTCTTACGTACAGAAAAGAGAGCTGCTCACGTGGCAGGACGGC
AACCGTCTTCGAAGGAATTAAAAAAAAAACTGTGCAGAGA

protein sequence of jgi.p|Nanoce1779_2|599924

>mRNA_7760-protein ID=mRNA_7760-protein|Name=jgi.p|Nanoce1779_2|599924|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVDAVLQG
LQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRGLIQQG
IAQIFGPYLGLGIAAGVFGLAHKMGPSDVLFITLSGAYMGGIFLLYGDLT
ITIALHASYDFLILCGAYLRAKRRISEGKGGMMVLEEEKERKEGGGKKES
SGGEE*

mRNA from alignment at scaffold_21:256443..258699+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7760 ID=mRNA_7760|Name=jgi.p|Nanoce1779_2|599924|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at scaffold_21:256443..258699+ (Nannochloropsis oceanica)
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGGTAGGTAGATGTGGGGAGGCAGTAAGGGGGGC
GAAGGGTGAAGGATACATCTATTCTGTGGAAAGAAATGCTTGACATCTGA
AATGTATGCTGACTGGACACAGTATTGCTCCTTCTTGGTGTCCTAAATAC
TCCAAGGAGTGCAAGAAGACACAAGTAGTGAGCTCTAGGTCCTCTCAAAT
CGGTACCAAGAAACGGCCAGCCTCGTCCAAATCCGCCCTAACCCATGCCG
CTCTATTTTTATTTTACATTCCACATTTATAGTGCTTCAAGGATTGCAAG
AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC
CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC
CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC
AGGTAAGTGATTTTAGTTCACGATGTTTGGGGTGGGTGGGGCATTGACTG
TCTATCTCACATGGCAGGGTCCGAGGTAGATAGGGGTAATGATCGATTGG
AACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGCAG
CAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATATCA
CACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT
GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC
AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA
CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT
CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT
GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG
GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA
AAAAAGGAGATGAAAAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA
TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC
ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT
AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT
AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA
TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA
AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC
GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC
TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT
GCAGAGA

Coding sequence (CDS) from alignment at scaffold_21:256443..258699+

>mRNA_7760 ID=mRNA_7760|Name=jgi.p|Nanoce1779_2|599924|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_21:256443..258699+ (Nannochloropsis oceanica)
ATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGTAGGTTCCTTCATAAG
CGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTTCCCAGTTCGCGCTCG
GCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGACGCTGTGCTTCAAGGA
TTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCAC
CAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGG
CGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGG
ATTGCTCAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGT
GTTTGGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCC
TTTCAGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACA
ATTACTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGC
ATATCTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGG
TGTTGGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGT
AGTGGTGGAGAAGAATAGATGGCCTTAGGTTTGGGAGCCTTAGGACAACT
CGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAAC
CTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTC
GACGCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGC
CCTCTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCG
CTGCTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGA
GGATTGATTCAACAGGGGATTGCTCAGATTTTCGGTCCTTACTTAGGGCT
TGGAATAGCAGCAGGCGTGTTTGGCTTAGCTCACAAAATGGGGCCATCCG
ATGTCCTTTTTATTACCCTTTCAGGGGCATATATGGGGGGCATCTTCTTG
CTCTATGGGGACTTGACAATTACTATTGCGTTGCATGCGAGTTATGATTT
TTTGATTTTGTGTGGAGCATATCTGAGGGCGAAGAGGAGGATTTCGGAGG
GGAAAGGGGGGATGATGGTGTTGGAAGAGGAAAAGGAAAGGAAGGAGGGG
GGAGGGAAGAAGGAAAGTAGTGGTGGAGAAGAATAGATGGCCTTAGGTTT
GGGAGCCTTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCG
CGACCCTTTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCC
CTCCCTCTTTTTGCAGTCGACGCTGTGCTTCAAGGATTGCAAGAAGACAC
AGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACCCCTGCCG
GCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGCCATTGGG
GAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTCAGATTTT
CGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTTGGCTTAGCTC
ACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTCAGGGGCATAT
ATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTACTATTGCGTT
GCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATATCTGAGGGCGA
AGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTTGGAAGAGGAA
AAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTGGTGGAGAAGA
ATAG

Synonyms

Publications