jgi.p|Nanoce1779_2|574093, mRNA_776 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574093
Unique Name	mRNA_776
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1623
Alignment location	scaffold_2:407751..409373 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574179
Track	FilteredModels2
ProteinId	574093

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:407751..409373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574093	gene_776	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574093	mRNA_776-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_776	CDS_776	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:407751..409373+
coding sequence from alignment at scaffold_2:407751..409373+

mRNA sequence

>mRNA_776 ID=mRNA_776|Name=jgi.p|Nanoce1779_2|574093|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ACAGTACTCACAACAACAGTAATCACGACCACCCGGGGACGAAGGACGAT
ATTCATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTTCTATGAAG
GTCGGGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCCTAATGGTG
GAGATGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCTTTGTCCTC
GACCACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTCTGGGTCAG
TCGCCACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCGACCCGGCC
TCGACCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCCATCACAAT
GGTCCTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGACATTGATT
TTCTCGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCGTGGTGGGC
TGCGATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTCGATCGCGC
CGTGGCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAGCATGCTTT
CCACGGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGGTCACCGTC
TTTAAGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGGTATTTCTA
CGGGGCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCATCATGATCT
TAGGCGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCGGCATAGGT
TATATTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTACGTTTTGTA
CATGAAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGGTATGGTCT
TCTACAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAGCGGCGGTC
CGAGGGGAATTTAGGATTTTTATTGGGACAGAAGACTTACACACGATGTC
ATATTTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTTCCTGAACT
TGGCGACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCTATGCAGTG
GTGGGAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGGCTAATGTT
TAAAACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCATGAGCATGT
GTGGGGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGGATCTGCGA
CCAACTTTGCCGAGATGAGGGGTAGGGAGGAAGGGCAGGGAAAATGTGGA
CATATTATCAGTTGGATTTAAAATAGAATGGTAAATAAAGAGCAGAAATG
TACGACAGCTGTTTGAAAGGTAGGTAGGCACTGTGTCGAGTTTTGAACGA
ATGCGCGACAGTCTCTTTCCTGGTTCACTTTCAGCAGCTGTAGTAGAAGC
AGCAGCAGTAATAAAATCTGTGGATTAGCGCTAATAGGAATAAAAACATC
AAACGAAAGATTTTCCCTGTTGGGTGAAAAGAGAGTCTTTTGCTGTCGCT
GCCTCTGCAGAATTTCATGATTGCAGAAGTCGGAAATAAGAAGATGATCA
GCGGATACGCGAAGGAACAAGTAAAAAGAGAAAGAGGAAGACGAAAGAAA
ATTGAGATGGCTGGTGATGATGA

protein sequence of jgi.p|Nanoce1779_2|574093

>mRNA_776-protein ID=mRNA_776-protein|Name=jgi.p|Nanoce1779_2|574093|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSLKGIGGRGGNFYEGRDGTVADDEEINPLMVEMRQAKGRLEGSSSLSST
TPSSSSSSRSSSSGSVATSYAATTVTSLGDPASTAIMSCFAYTFCSITMV
LANKALASQYKADIDFLVIAFQSVCAVALVVGCDAVGVIQPGSTKFDRAV
AVQWLPVNIFFVSMLSTGFLSLKHLNVPMVTVFKNLTNVGIMWGEWYFYG
AHVSLGAILSCAIMILGALLAAANDITFSGIGYIWMVSNCCCTAGYVLYM
KHATKTVRLPKFGMVFYNNLLSLPILLVGAAVRGEFRIFIGTEDLHTMSY
LSLSIYAGLVGFFLNLATLWCVSNNSATTYAVVGALNKIPLAVLGWLMFK
TPITHKALVFLSMSMCGGFLYTYTKLKEVDLRPTLPR*

mRNA from alignment at scaffold_2:407751..409373+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_776 ID=mRNA_776|Name=jgi.p|Nanoce1779_2|574093|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_2:407751..409373+ (Nannochloropsis oceanica)
ACAGTACTCACAACAACAGTAATCACGACCACCCGGGGACGAAGGACGAT
ATTCATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTTCTATGAAG
GTCGGGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCCTAATGGTG
GAGATGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCTTTGTCCTC
GACCACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTCTGGGTCAG
TCGCCACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCGACCCGGCC
TCGACCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCCATCACAAT
GGTCCTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGACATTGATT
TTCTCGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCGTGGTGGGC
TGCGATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTCGATCGCGC
CGTGGCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAGCATGCTTT
CCACGGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGGTCACCGTC
TTTAAGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGGTATTTCTA
CGGGGCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCATCATGATCT
TAGGCGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCGGCATAGGT
TATATTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTACGTTTTGTA
CATGAAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGGTATGGTCT
TCTACAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAGCGGCGGTC
CGAGGGGAATTTAGGATTTTTATTGGGACAGAAGACTTACACACGATGTC
ATATTTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTTCCTGAACT
TGGCGACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCTATGCAGTG
GTGGGAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGGCTAATGTT
TAAAACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCATGAGCATGT
GTGGGGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGGATCTGCGA
CCAACTTTGCCGAGATGAGGGGTAGGGAGGAAGGGCAGGGAAAATGTGGA
CATATTATCAGTTGGATTTAAAATAGAATGGTAAATAAAGAGCAGAAATG
TACGACAGCTGTTTGAAAGGTAGGTAGGCACTGTGTCGAGTTTTGAACGA
ATGCGCGACAGTCTCTTTCCTGGTTCACTTTCAGCAGCTGTAGTAGAAGC
AGCAGCAGTAATAAAATCTGTGGATTAGCGCTAATAGGAATAAAAACATC
AAACGAAAGATTTTCCCTGTTGGGTGAAAAGAGAGTCTTTTGCTGTCGCT
GCCTCTGCAGAATTTCATGATTGCAGAAGTCGGAAATAAGAAGATGATCA
GCGGATACGCGAAGGAACAAGTAAAAAGAGAAAGAGGAAGACGAAAGAAA
ATTGAGATGGCTGGTGATGATGA

Coding sequence (CDS) from alignment at scaffold_2:407751..409373+

>mRNA_776 ID=mRNA_776|Name=jgi.p|Nanoce1779_2|574093|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_2:407751..409373+ (Nannochloropsis oceanica)
ATGTCCTTGAAGGGCATTGGGGGCAGGGGCGGAAACTTCTATGAAGGTCG
GGATGGCACCGTCGCCGACGATGAGGAAATTAATCCCCTAATGGTGGAGA
TGCGCCAAGCCAAGGGTCGGCTTGAAGGCAGCTCATCTTTGTCCTCGACC
ACTCCATCGTCATCCTCCTCATCTCGTTCCTCCTCTTCTGGGTCAGTCGC
CACGTCCTACGCCGCGACAACCGTGACGAGCCTAGGCGACCCGGCCTCGA
CCGCCATCATGTCATGCTTCGCCTACACCTTTTGCTCCATCACAATGGTC
CTGGCCAACAAGGCCCTCGCCTCGCAATACAAAGCTGACATTGATTTTCT
CGTTATTGCCTTTCAAAGCGTTTGTGCCGTCGCCCTCGTGGTGGGCTGCG
ATGCGGTCGGAGTCATTCAACCGGGCAGCACCAAATTCGATCGCGCCGTG
GCTGTTCAATGGCTCCCTGTCAACATCTTCTTCGTCAGCATGCTTTCCAC
GGGCTTTCTCAGTCTCAAACACCTCAATGTGCCCATGGTCACCGTCTTTA
AGAACCTGACCAACGTGGGCATCATGTGGGGGGAGTGGTATTTCTACGGG
GCACACGTCTCCCTCGGTGCCATCTTATCTTGTGCCATCATGATCTTAGG
CGCCCTCCTCGCCGCTGCCAACGACATCACGTTCTCCGGCATAGGTTATA
TTTGGATGGTCTCCAATTGCTGTTGCACTGCCGGGTACGTTTTGTACATG
AAGCATGCCACTAAAACGGTGCGTCTGCCCAAATTTGGTATGGTCTTCTA
CAACAACCTCTTGTCATTGCCGATCCTGTTGGTAGGAGCGGCGGTCCGAG
GGGAATTTAGGATTTTTATTGGGACAGAAGACTTACACACGATGTCATAT
TTGAGCTTGTCGATATATGCAGGATTGGTAGGCTTTTTCCTGAACTTGGC
GACGTTATGGTGTGTGAGTAATAATTCAGCCACGACCTATGCAGTGGTGG
GAGCACTGAACAAAATACCCTTGGCGGTGTTGGGATGGCTAATGTTTAAA
ACACCCATAACGCACAAAGCGTTGGTGTTTTTGTCCATGAGCATGTGTGG
GGGCTTTTTGTATACCTACACTAAATTGAAGGAGGTGGATCTGCGACCAA
CTTTGCCGAGATGA

Synonyms

Publications