jgi.p|Nanoce1779_2|599923, mRNA_7759 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599923
Unique Name	mRNA_7759
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1928
Alignment location	scaffold_21:256443..258699 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600009
Track	FilteredModels2
ProteinId	599923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:256443..258699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599923	gene_7759	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599923	mRNA_7759-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7759	CDS_7759	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:256443..258699+
coding sequence from alignment at scaffold_21:256443..258699+

mRNA sequence

>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Nanoce1779_2|599923|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGC
GAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGT
CCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAG
CGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTCAGGGTCCGAGGTAG
ATAGGGGTAATGATCGATTGGAACGGCAGGAGAGCAGCAACAACAGAACG
GCCGGAGAGCAGCAACAGCAGCAGCCGAGGTTGAACAATATTTCCCGTCC
CTCCGACTATCTAATATATCACACAGATTTTCGGTCCTTACTTAGGGCTT
GGAATAGCAGCAGGCGTGTTTGGCTTAGCTCACAAAATGGGGCCATCCGA
TGTCCTTTTTATTACCCTTTCAGGGGCATATATGGGGGGCATCTTCTTGC
TCTATGGGGACTTGACAATTACTATTGCGTTGCATGCGAGTTATGATTTT
TTGATTTTGTGTGGAGCATATCTGAGGGCGAAGAGGAGGATTTCGGAGGG
GAAAGGGGGGATGATGGTGTTGGAAGAGGAAAAGGAAAGGAAGGAGGGGG
GAGGGAAGAAGGAAAGTAGTGGTGGAGAAGAATAGTTTTGTCTCATTTTT
CTTCATGGGAAATATAGAACAAAAAAGGAGATGAAAAATGGAGCGAGTGA
AAGGTAGGCTAGATCATATTATTGTTTTCTATTTGTACATTGTGTGCAGT
GTAACTGATTGGTGCGGTGACATTAACAGCAGCAGCAGCAGCAGCTGTGC
AGTACAGACATATAGGTGGATAAGCGTGAGGACCATGAGATTTGGTTTTC
TCCGCCTTTTTCTGGCGCTTTAGTTTGATGCAAAAATGCATGCGTCAGAA
GTGTTAGAAGAAAGATAGTCATCGGCGAGTCACGTACGCATAGAGAGAGA
AGTCAAGAACATCGGCAGTGAAATACCACGCTTCCGGTGGGGGCAATGAC
ATTCATTGCTCTCTTGCGAGCGAGACAATTTGTCTCGGTAAAAGTCTCTT
ACGTACAGAAAAGAGAGCTGCTCACGTGGCAGGACGGCAACCGTCTTCGA
AGGAATTAAAAAAAAAACTGTGCAGAGA

protein sequence of jgi.p|Nanoce1779_2|599923

>mRNA_7759-protein ID=mRNA_7759-protein|Name=jgi.p|Nanoce1779_2|599923|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKVSFLDGWWVRQFHL
LNRSFCWLVSHFV*

mRNA from alignment at scaffold_21:256443..258699+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Nanoce1779_2|599923|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at scaffold_21:256443..258699+ (Nannochloropsis oceanica)
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGGTAGGTAGATGTGGGGAGGCAGTAAGGGGGGC
GAAGGGTGAAGGATACATCTATTCTGTGGAAAGAAATGCTTGACATCTGA
AATGTATGCTGACTGGACACAGTATTGCTCCTTCTTGGTGTCCTAAATAC
TCCAAGGAGTGCAAGAAGACACAAGTAGTGAGCTCTAGGTCCTCTCAAAT
CGGTACCAAGAAACGGCCAGCCTCGTCCAAATCCGCCCTAACCCATGCCG
CTCTATTTTTATTTTACATTCCACATTTATAGTGCTTCAAGGATTGCAAG
AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC
CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC
CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC
AGGTAAGTGATTTTAGTTCACGATGTTTGGGGTGGGTGGGGCATTGACTG
TCTATCTCACATGGCAGGGTCCGAGGTAGATAGGGGTAATGATCGATTGG
AACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGCAG
CAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATATCA
CACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT
GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC
AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA
CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT
CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT
GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG
GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA
AAAAAGGAGATGAAAAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA
TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC
ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT
AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT
AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA
TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA
AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC
GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC
TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT
GCAGAGA

Coding sequence (CDS) from alignment at scaffold_21:256443..258699+

>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Nanoce1779_2|599923|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_21:256443..258699+ (Nannochloropsis oceanica)
ATGTCCCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGC
CGTCCGCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAA
CAGCGCTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTG
CCTCTGTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCC
CAGCCTCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTC
AGAGCACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAG
CTAAAGTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGG
TGGAGACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCA
AGGGCAAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTA
CTCAATCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAA

Synonyms

Publications