jgi.p|Nanoce1779_2|599918, mRNA_7757 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599918
Unique NamemRNA_7757
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1198
Alignment locationscaffold_21:252006..253203 +

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Properties
Property NameValue
TranscriptId600004
TrackFilteredModels2
ProteinId599918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:252006..253203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599918gene_7757Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599918mRNA_7757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7757CDS_7757Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7757 ID=mRNA_7757|Name=jgi.p|Nanoce1779_2|599918|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp
ACAGGTTGGCAAAGATAGAGGACAAGGCCGGTTAAAAGGCAGCGTGTAGG
AACCAAAATATTTTACGCCTCTTCCCAGCCCAGCAAGCCCGGCGCATGTA
CCCCCGCCCCGTCCGAGCTCTCCTCTTCTTGTCCTGTTGCACGACTTGGA
TGTTCTTGGCCTTTAGCCGTGGACGAGGAGCTGATATTGCCCACTGCATT
CCCTGCTTCACCACATCATTGTCATCTTCGTGCTTCCTTGCTCCCGCTAT
CCCGACGTTCGTCCGCCGCCGCCACAGTCAGAGTTTCCGTCCCACAAGCC
GTGCTCCAATCACCGCCATCAGTGCCAGTATGACTGAGAGCGTCGCGTCA
ACACTAAATAACTACGTCGACGTGCATTGCCACATTATCCATGAAAAGTT
TGTGGGGGAAGAAGACGACGTCGCACAGCGTGCTCGGGACAAGGGCCTGG
AGTTCTGCGTTGTGAACGGCTTGGAGCCGCAGTCGAATCGGGCGGTGCTA
GAGCTCTGTGCCCGGCACCCTGCCAGTCTCTTGCCTGCGTTGGGTATTTA
TCCTTTGGACGCGGCATGTAATGTCATTGGCCCTGATGCCTGGCCTCATC
CTTTTCCCCCTCCCGATAAATTCGATGTCGACGCCGAGGTGGAATGGATT
GATCAAATGTGCGCCGAAGGCAAGGTGGTAGCTGTGGGTGAATGCGGCCT
AGATGCTTACTACTGCACGGATCCCACGCAGCTTGCAGAACAAGAACGGG
TGCTTCGGAAGCTAATCGTAGTGGCGAAAAAACACGGCCTCCCCCTCATC
CTTCACACCCGCAAGGCCGAGCTGCGTACCTTCGAGATATTGCAAGAAAT
GGAAGTCACGAAGGCAGATTTTCATTGCTTCAGTGGGAAGGTAAAGCTTG
GGAAACGTATTGCGGAGGCGGGCTATTATCTATCAATCCCCTCGGTGGTA
AATCGGAGTGAGTCGTTCAAGAAATTGGTAAAGGAGTTGCCCCTCGAGCA
GCTTTTGACGGAGACGGATTCTCCTTATCAAGGTCCGGAGAAGGATATGA
GGAATGAGCCGATGACTGTGCCGATTGGTGTGGCAGCCATTGCGGCAGTG
AAGGGAATTACACAAGAGGAGGCTATGATGATAATCAGGGCAAATTTTCG
ACGGTTGATGAATCGATAGAAGAAAATGAAAGTACGCATTTGGTGAGA
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protein sequence of jgi.p|Nanoce1779_2|599918

>mRNA_7757-protein ID=mRNA_7757-protein|Name=jgi.p|Nanoce1779_2|599918|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MYPRPVRALLFLSCCTTWMFLAFSRGRGADIAHCIPCFTTSLSSSCFLAP
AIPTFVRRRHSQSFRPTSRAPITAISASMTESVASTLNNYVDVHCHIIHE
KFVGEEDDVAQRARDKGLEFCVVNGLEPQSNRAVLELCARHPASLLPALG
IYPLDAACNVIGPDAWPHPFPPPDKFDVDAEVEWIDQMCAEGKVVAVGEC
GLDAYYCTDPTQLAEQERVLRKLIVVAKKHGLPLILHTRKAELRTFEILQ
EMEVTKADFHCFSGKVKLGKRIAEAGYYLSIPSVVNRSESFKKLVKELPL
EQLLTETDSPYQGPEKDMRNEPMTVPIGVAAIAAVKGITQEEAMMIIRAN
FRRLMNR*
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mRNA from alignment at scaffold_21:252006..253203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7757 ID=mRNA_7757|Name=jgi.p|Nanoce1779_2|599918|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_21:252006..253203+ (Nannochloropsis oceanica)
ACAGGTTGGCAAAGATAGAGGACAAGGCCGGTTAAAAGGCAGCGTGTAGG
AACCAAAATATTTTACGCCTCTTCCCAGCCCAGCAAGCCCGGCGCATGTA
CCCCCGCCCCGTCCGAGCTCTCCTCTTCTTGTCCTGTTGCACGACTTGGA
TGTTCTTGGCCTTTAGCCGTGGACGAGGAGCTGATATTGCCCACTGCATT
CCCTGCTTCACCACATCATTGTCATCTTCGTGCTTCCTTGCTCCCGCTAT
CCCGACGTTCGTCCGCCGCCGCCACAGTCAGAGTTTCCGTCCCACAAGCC
GTGCTCCAATCACCGCCATCAGTGCCAGTATGACTGAGAGCGTCGCGTCA
ACACTAAATAACTACGTCGACGTGCATTGCCACATTATCCATGAAAAGTT
TGTGGGGGAAGAAGACGACGTCGCACAGCGTGCTCGGGACAAGGGCCTGG
AGTTCTGCGTTGTGAACGGCTTGGAGCCGCAGTCGAATCGGGCGGTGCTA
GAGCTCTGTGCCCGGCACCCTGCCAGTCTCTTGCCTGCGTTGGGTATTTA
TCCTTTGGACGCGGCATGTAATGTCATTGGCCCTGATGCCTGGCCTCATC
CTTTTCCCCCTCCCGATAAATTCGATGTCGACGCCGAGGTGGAATGGATT
GATCAAATGTGCGCCGAAGGCAAGGTGGTAGCTGTGGGTGAATGCGGCCT
AGATGCTTACTACTGCACGGATCCCACGCAGCTTGCAGAACAAGAACGGG
TGCTTCGGAAGCTAATCGTAGTGGCGAAAAAACACGGCCTCCCCCTCATC
CTTCACACCCGCAAGGCCGAGCTGCGTACCTTCGAGATATTGCAAGAAAT
GGAAGTCACGAAGGCAGATTTTCATTGCTTCAGTGGGAAGGTAAAGCTTG
GGAAACGTATTGCGGAGGCGGGCTATTATCTATCAATCCCCTCGGTGGTA
AATCGGAGTGAGTCGTTCAAGAAATTGGTAAAGGAGTTGCCCCTCGAGCA
GCTTTTGACGGAGACGGATTCTCCTTATCAAGGTCCGGAGAAGGATATGA
GGAATGAGCCGATGACTGTGCCGATTGGTGTGGCAGCCATTGCGGCAGTG
AAGGGAATTACACAAGAGGAGGCTATGATGATAATCAGGGCAAATTTTCG
ACGGTTGATGAATCGATAGAAGAAAATGAAAGTACGCATTTGGTGAGA
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Coding sequence (CDS) from alignment at scaffold_21:252006..253203+

>mRNA_7757 ID=mRNA_7757|Name=jgi.p|Nanoce1779_2|599918|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_21:252006..253203+ (Nannochloropsis oceanica)
ATGTACCCCCGCCCCGTCCGAGCTCTCCTCTTCTTGTCCTGTTGCACGAC
TTGGATGTTCTTGGCCTTTAGCCGTGGACGAGGAGCTGATATTGCCCACT
GCATTCCCTGCTTCACCACATCATTGTCATCTTCGTGCTTCCTTGCTCCC
GCTATCCCGACGTTCGTCCGCCGCCGCCACAGTCAGAGTTTCCGTCCCAC
AAGCCGTGCTCCAATCACCGCCATCAGTGCCAGTATGACTGAGAGCGTCG
CGTCAACACTAAATAACTACGTCGACGTGCATTGCCACATTATCCATGAA
AAGTTTGTGGGGGAAGAAGACGACGTCGCACAGCGTGCTCGGGACAAGGG
CCTGGAGTTCTGCGTTGTGAACGGCTTGGAGCCGCAGTCGAATCGGGCGG
TGCTAGAGCTCTGTGCCCGGCACCCTGCCAGTCTCTTGCCTGCGTTGGGT
ATTTATCCTTTGGACGCGGCATGTAATGTCATTGGCCCTGATGCCTGGCC
TCATCCTTTTCCCCCTCCCGATAAATTCGATGTCGACGCCGAGGTGGAAT
GGATTGATCAAATGTGCGCCGAAGGCAAGGTGGTAGCTGTGGGTGAATGC
GGCCTAGATGCTTACTACTGCACGGATCCCACGCAGCTTGCAGAACAAGA
ACGGGTGCTTCGGAAGCTAATCGTAGTGGCGAAAAAACACGGCCTCCCCC
TCATCCTTCACACCCGCAAGGCCGAGCTGCGTACCTTCGAGATATTGCAA
GAAATGGAAGTCACGAAGGCAGATTTTCATTGCTTCAGTGGGAAGGTAAA
GCTTGGGAAACGTATTGCGGAGGCGGGCTATTATCTATCAATCCCCTCGG
TGGTAAATCGGAGTGAGTCGTTCAAGAAATTGGTAAAGGAGTTGCCCCTC
GAGCAGCTTTTGACGGAGACGGATTCTCCTTATCAAGGTCCGGAGAAGGA
TATGAGGAATGAGCCGATGACTGTGCCGATTGGTGTGGCAGCCATTGCGG
CAGTGAAGGGAATTACACAAGAGGAGGCTATGATGATAATCAGGGCAAAT
TTTCGACGGTTGATGAATCGATAG
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Synonyms
Publications