jgi.p|Nanoce1779_2|599914, mRNA_7756 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599914
Unique NamemRNA_7756
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1367
Alignment locationscaffold_21:249451..251041 -

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Properties
Property NameValue
TranscriptId600000
TrackFilteredModels2
ProteinId599914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:249451..251041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599914gene_7756Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599914mRNA_7756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7756CDS_7756Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Nanoce1779_2|599914|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
CAGCCCTCGTGTGCCATCATGCTCCAGAGCATTTTGGCGTGTTCACTTTT
GTTAGTCGACGCATGCGGCGGCCTTCCTGCCAAGACGACGTCGCGCGACC
CACTGGCTTTCTTTGGCAACTGGGGAAAACCCTTTGTCCCCAAGGTCCCG
AGTGCTGCGCCTGCTCCTGCCGCTGCCGCTGCCCCCGCGAGGAAACTCGT
CGATTATAGTCCTAGGCTCCCAAAACTGTATGGGGGGTGGTTCGACAATA
CTCTCGTCGATCAAGCATCTGCAGCCATCACCGCGGCGTTGAAAGACGGC
ATTCAGACGTCCGAAGTGCTCTTCCCCCCCTTGCCCAACATGGAAGAGCG
CGAGTTCGGGACCAGTCTAAACATGAAATACAACAGGGCCGTCGCCACTC
GTTTGGGCGGCCCCGACAATATTTTGCGGAAGCAAAGCGTTGCTTATGCG
AATGTTGACCTGGCCAGCAGAATCGCCACCAAGCTCAGAAAACGCACCCT
CCTCCTCACCTACGACAACGCTGTCGACTCAAGCATCATAAAGCTTAGCA
AACAAGCCGAAATCATGCGCATCAGTAGCGCTGATCTCAAAGCATGTATA
ACGGCCAATGATGTTTTGCTCGCCCTTTCCCCTGGCGTCGGTTCGCATTG
GACCAAAGCAGCGGGGCTCCAAACCGAGGCGCCCGTGGTGGCCATGAATG
CCCCCTTTTCCCTTTCTTACGATATCGCACAAGGTGGGAAATGGGAGCCG
ATTTATGTAGTCAAAAGAGTGACGAAAGGATGGATTTATCGAGCTTACCC
GTCTGGATTTAAGGTGTATTTAGACAAACCTGATGGAACGGTAGAGTTAA
TCAAGGAATTTGACAAGGGGGTGATCCCCAAGCTGAGGGAAGTGGCGGCC
GTGGTCCGCGACGAAAGTCAAGCACGAGGATATGCCATTTCGAATGATCG
GTACTTGACGCAGCGGTTATAAATGTGGCGTAATTGAAGTAGAGGGAGGA
TATGGGGAGGTCCTTGGTGTTTATGCGAAATGGAGAGAAATGGGGAGAGA
GGATGGAAGAGCGGCAGAAACGACGAAAGCAAACAACATAAAGCATTCGA
TTTGTCCGAGGAGAGATGTAAGTTAGACTAGTCAGACGCAGAGTGGATTT
GTTTCTCTAATGAGTAGCCCAGGTGTATGGCAATTTTGTTCGATGTGCTC
ACAGAGCGTGCGTGCGAGGAGCCAGATTTGGGGGCCAGTGACCTGTAGGG
AAATTAAGGAGGGTATTTTTTTCACTTGAACATATCTATTGAACACCTAG
TTCTGCTTTGTAGCTTGTTGCTGTTATGGACGTGCCCTACTGTGAAGAAG
GAAAGCAAGAATTCGGT
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protein sequence of jgi.p|Nanoce1779_2|599914

>mRNA_7756-protein ID=mRNA_7756-protein|Name=jgi.p|Nanoce1779_2|599914|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MLQSILACSLLLVDACGGLPAKTTSRDPLAFFGNWGKPFVPKVPSAAPAP
AAAAAPARKLVDYSPRLPKLYGGWFDNTLVDQASAAITAALKDGIQTSEV
LFPPLPNMEEREFGTSLNMKYNRAVATRLGGPDNILRKQSVAYANVDLAS
RIATKLRKRTLLLTYDNAVDSSIIKLSKQAEIMRISSADLKACITANDVL
LALSPGVGSHWTKAAGLQTEAPVVAMNAPFSLSYDIAQGGKWEPIYVVKR
VTKGWIYRAYPSGFKVYLDKPDGTVELIKEFDKGVIPKLREVAAVVRDES
QARGYAISNDRYLTQRL*
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mRNA from alignment at scaffold_21:249451..251041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Nanoce1779_2|599914|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp|location=Sequence derived from alignment at scaffold_21:249451..251041- (Nannochloropsis oceanica)
CAGCCCTCGTGTGCCATCATGCTCCAGAGCATTTTGGCGTGTTCACTTTT
GTTAGTCGACGCATGCGGCGGCCTTCCTGCCAAGACGACGTCGCGCGACC
CACTGGCTTTCTTTGGCAACTGGGGAAAACCCTTTGTCCCCAAGGTCCCG
AGTGCTGCGCCTGCTCCTGCCGCTGCCGCTGCCCCCGCGAGGAAACTCGT
CGATTATAGTCCTAGGCTCCCAAAACTGTATGGGGGGTGGTTCGACAATA
CTCTCGTCGATCAAGCATCTGCAGCCATCACCGCGGCGTTGAAAGACGGT
ACGTGATAATTGCTGAGCACTGAAATCTGGGGAAATTGCTGTCTGACCGG
CCTTTCTTCCGCCCTTGTCTTCTTATCCTCCATTTAACAGGCATTCAGAC
GTCCGAAGTGCTCTTCCCCCCCTTGCCCAACATGGAAGAGCGCGAGTTCG
GGACCAGTCTAAACAGTACGTAATGCATCTTTGCTTTTCCGCTTCGCAGT
AGTGTGTATGAGTCCCAGAGATGTACTGCTCTGCTACGTACAACCCTCTC
CGTCTCTCACCGCGCATTTCAACATCCGCCCTCCTTCGTCCCTTCAGTGA
AATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCGACAATATTTTG
CGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCCAGCAGAATCGC
CACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGACAACGCTGTCG
ACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCATGCGCATCAGT
AGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTTTTGCTCGCCCT
TTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGGGCTCCAAACCG
AGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTTCTTACGATATC
GCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAAAGAGTGACGAA
AGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGTGTATTTAGACA
AACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACAAGGGGGTGATC
CCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAAAGTCAAGCACG
AGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCGGTTATAAATGT
GGCGTAATTGAAGTAGAGGGAGGATATGGGGAGGTCCTTGGTGTTTATGC
GAAATGGAGAGAAATGGGGAGAGAGGATGGAAGAGCGGCAGAAACGACGA
AAGCAAACAACATAAAGCATTCGATTTGTCCGAGGAGAGATGTAAGTTAG
ACTAGTCAGACGCAGAGTGGATTTGTTTCTCTAATGAGTAGCCCAGGTGT
ATGGCAATTTTGTTCGATGTGCTCACAGAGCGTGCGTGCGAGGAGCCAGA
TTTGGGGGCCAGTGACCTGTAGGGAAATTAAGGAGGGTATTTTTTTCACT
TGAACATATCTATTGAACACCTAGTTCTGCTTTGTAGCTTGTTGCTGTTA
TGGACGTGCCCTACTGTGAAGAAGGAAAGCAAGAATTCGGT
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Coding sequence (CDS) from alignment at scaffold_21:249451..251041-

>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Nanoce1779_2|599914|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_21:249451..251041- (Nannochloropsis oceanica)
TGAAATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCGACAATATT
TTGCGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCCAGCAGAAT
CGCCACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGACAACGCTG
TCGACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCATGCGCATC
AGTAGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTTTTGCTCGC
CCTTTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGGGCTCCAAA
CCGAGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTTCTTACGAT
ATCGCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAAAGAGTGAC
GAAAGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGTGTATTTAG
ACAAACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACAAGGGGGTG
ATCCCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAAAGTCAAGC
ACGAGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCGGTTATAAG
CATTCAGACGTCCGAAGTGCTCTTCCCCCCCTTGCCCAACATGGAAGAGC
GCGAGTTCGGGACCAGTCTAAACAATGCTCCAGAGCATTTTGGCGTGTTC
ACTTTTGTTAGTCGACGCATGCGGCGGCCTTCCTGCCAAGACGACGTCGC
GCGACCCACTGGCTTTCTTTGGCAACTGGGGAAAACCCTTTGTCCCCAAG
GTCCCGAGTGCTGCGCCTGCTCCTGCCGCTGCCGCTGCCCCCGCGAGGAA
ACTCGTCGATTATAGTCCTAGGCTCCCAAAACTGTATGGGGGGTGGTTCG
ACAATACTCTCGTCGATCAAGCATCTGCAGCCATCACCGCGGCGTTGAAA
GACGTGAAATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCGACAA
TATTTTGCGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCCAGCA
GAATCGCCACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGACAAC
GCTGTCGACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCATGCG
CATCAGTAGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTTTTGC
TCGCCCTTTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGGGCTC
CAAACCGAGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTTCTTA
CGATATCGCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAAAGAG
TGACGAAAGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGTGTAT
TTAGACAAACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACAAGGG
GGTGATCCCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAAAGTC
AAGCACGAGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCGGTTA
TAAGCATTCAGACGTCCGAAGTGCTCTTCCCCCCCTTGCCCAACATGGAA
GAGCGCGAGTTCGGGACCAGTCTAAACAATGCTCCAGAGCATTTTGGCGT
GTTCACTTTTGTTAGTCGACGCATGCGGCGGCCTTCCTGCCAAGACGACG
TCGCGCGACCCACTGGCTTTCTTTGGCAACTGGGGAAAACCCTTTGTCCC
CAAGGTCCCGAGTGCTGCGCCTGCTCCTGCCGCTGCCGCTGCCCCCGCGA
GGAAACTCGTCGATTATAGTCCTAGGCTCCCAAAACTGTATGGGGGGTGG
TTCGACAATACTCTCGTCGATCAAGCATCTGCAGCCATCACCGCGGCGTT
GAAAGACGTGAAATACAACAGGGCCGTCGCCACTCGTTTGGGCGGCCCCG
ACAATATTTTGCGGAAGCAAAGCGTTGCTTATGCGAATGTTGACCTGGCC
AGCAGAATCGCCACCAAGCTCAGAAAACGCACCCTCCTCCTCACCTACGA
CAACGCTGTCGACTCAAGCATCATAAAGCTTAGCAAACAAGCCGAAATCA
TGCGCATCAGTAGCGCTGATCTCAAAGCATGTATAACGGCCAATGATGTT
TTGCTCGCCCTTTCCCCTGGCGTCGGTTCGCATTGGACCAAAGCAGCGGG
GCTCCAAACCGAGGCGCCCGTGGTGGCCATGAATGCCCCCTTTTCCCTTT
CTTACGATATCGCACAAGGTGGGAAATGGGAGCCGATTTATGTAGTCAAA
AGAGTGACGAAAGGATGGATTTATCGAGCTTACCCGTCTGGATTTAAGGT
GTATTTAGACAAACCTGATGGAACGGTAGAGTTAATCAAGGAATTTGACA
AGGGGGTGATCCCCAAGCTGAGGGAAGTGGCGGCCGTGGTCCGCGACGAA
AGTCAAGCACGAGGATATGCCATTTCGAATGATCGGTACTTGACGCAGCG
GTTATAAGCATTCAGACGTCCGAAGTGCTCTTCCCCCCCTTGCCCAACAT
GGAAGAGCGCGAGTTCGGGACCAGTCTAAACAATGCTCCAGAGCATTTTG
GCGTGTTCACTTTTGTTAGTCGACGCATGCGGCGGCCTTCCTGCCAAGAC
GACGTCGCGCGACCCACTGGCTTTCTTTGGCAACTGGGGAAAACCCTTTG
TCCCCAAGGTCCCGAGTGCTGCGCCTGCTCCTGCCGCTGCCGCTGCCCCC
GCGAGGAAACTCGTCGATTATAGTCCTAGGCTCCCAAAACTGTATGGGGG
GTGGTTCGACAATACTCTCGTCGATCAAGCATCTGCAGCCATCACCGCGG
CGTTGAAAGACG
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Synonyms
Publications