jgi.p|Nanoce1779_2|599907, mRNA_7753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599907
Unique NamemRNA_7753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length490
Alignment locationscaffold_21:243121..243610 +

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Properties
Property NameValue
TranscriptId599993
TrackFilteredModels2
ProteinId599907
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:243121..243610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599907gene_7753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599907mRNA_7753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7753CDS_7753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7753 ID=mRNA_7753|Name=jgi.p|Nanoce1779_2|599907|organism=Nannochloropsis oceanica|type=mRNA|length=490bp
GGGTAGTCGTATGTCCACTTTCTCGTTATTTACTTGTCAGATTTGTGGGT
GCAAAAAATATGGTTTTGTGTGTACATACTCTCTCTTTTAATCTCTCTTT
CTCTCTCTCCTCTCTCTCTTTCTCCCTATCTTTTTCTCTTCATCCCATTC
CTTCCGTCTCGTCTCTGCCTACTTTGTTCCTGTCCCTCTATCCCGATGAA
TTCGCAAAATCTTGCTCTGAGGCTTGGGGGGCGAATGAGAAAGGACGCGC
GCTCCCGCCCCCGCAGAGACTTTCCCAGTCCTTCCCGGCCACCCCTCCCC
GACGCCAGTGCCTCGCCGCAAGGTCAGGGCAATCACCTTTTCCATCCTTG
ACTCCCCGAGCACAGCAATCGTGTGACTCACCGAATGAACAACAGTACCA
TTTACTTTGAGCAACGAATCTCCCAACCTGATACCCGCGCGCATGGATGG
GTTCATTGCATGCACACCATGACCCCCCCCACCTCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|599907

>mRNA_7753-protein ID=mRNA_7753-protein|Name=jgi.p|Nanoce1779_2|599907|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MVLCVHTLSFNLSFSLSSLSFSLSFSLHPIPSVSSLPTLFLSLYPDEFAK
SCSEAWGANEKGRALPPPQRLSQSFPATPPRRQCLAARSGQSPFPSLTPR
AQQSCDSPNEQQYHLL*
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mRNA from alignment at scaffold_21:243121..243610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7753 ID=mRNA_7753|Name=jgi.p|Nanoce1779_2|599907|organism=Nannochloropsis oceanica|type=mRNA|length=490bp|location=Sequence derived from alignment at scaffold_21:243121..243610+ (Nannochloropsis oceanica)
GGGTAGTCGTATGTCCACTTTCTCGTTATTTACTTGTCAGATTTGTGGGT
GCAAAAAATATGGTTTTGTGTGTACATACTCTCTCTTTTAATCTCTCTTT
CTCTCTCTCCTCTCTCTCTTTCTCCCTATCTTTTTCTCTTCATCCCATTC
CTTCCGTCTCGTCTCTGCCTACTTTGTTCCTGTCCCTCTATCCCGATGAA
TTCGCAAAATCTTGCTCTGAGGCTTGGGGGGCGAATGAGAAAGGACGCGC
GCTCCCGCCCCCGCAGAGACTTTCCCAGTCCTTCCCGGCCACCCCTCCCC
GACGCCAGTGCCTCGCCGCAAGGTCAGGGCAATCACCTTTTCCATCCTTG
ACTCCCCGAGCACAGCAATCGTGTGACTCACCGAATGAACAACAGTACCA
TTTACTTTGAGCAACGAATCTCCCAACCTGATACCCGCGCGCATGGATGG
GTTCATTGCATGCACACCATGACCCCCCCCACCTCCTCCC
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Coding sequence (CDS) from alignment at scaffold_21:243121..243610+

>mRNA_7753 ID=mRNA_7753|Name=jgi.p|Nanoce1779_2|599907|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_21:243121..243610+ (Nannochloropsis oceanica)
ATGGTTTTGTGTGTACATACTCTCTCTTTTAATCTCTCTTTCTCTCTCTC
CTCTCTCTCTTTCTCCCTATCTTTTTCTCTTCATCCCATTCCTTCCGTCT
CGTCTCTGCCTACTTTGTTCCTGTCCCTCTATCCCGATGAATTCGCAAAA
TCTTGCTCTGAGGCTTGGGGGGCGAATGAGAAAGGACGCGCGCTCCCGCC
CCCGCAGAGACTTTCCCAGTCCTTCCCGGCCACCCCTCCCCGACGCCAGT
GCCTCGCCGCAAGGTCAGGGCAATCACCTTTTCCATCCTTGACTCCCCGA
GCACAGCAATCGTGTGACTCACCGAATGAACAACAGTACCATTTACTTTG
A
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Synonyms
Publications