jgi.p|Nanoce1779_2|568096, mRNA_7752 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568096
Unique Name	mRNA_7752
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1920
Alignment location	scaffold_21:240515..243058 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568182
Track	FilteredModels2
ProteinId	568096

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:240515..243058 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568096	gene_7752	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568096	mRNA_7752-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7752	CDS_7752	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:240515..243058+
coding sequence from alignment at scaffold_21:240515..243058+

mRNA sequence

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Nanoce1779_2|568096|organism=Nannochloropsis oceanica|type=mRNA|length=1920bp
ATGGCGAGTAGCAGCAGTCTCAGTGGCATGCAGTCTTGCTCATTAAAGGC
TGCCGGGATGTTGGAGGGTATGGAGGTTACTGATGGAGAAGGTGTGGAAG
AGGAAAGGTCGGTAGCGGATGGGGTTGGTGAAGATGCAGGGGAACAGTTG
AGACGACAAAATGGGACAGGATGTGTAGAACTAGGGTATGAAACTGACGT
AAAGCAGCCTATCGTCTCCTTACTGCAATACACTCCCCTCGTCCGCCGTA
TGCGCTACCGGGGCGAGGTCTGCACGCTCGCAGGTGCCCTCATTTCTTCT
GCCACCCCCCGCCTTTCACGACTCCTTGCGCTGGATTTGTCTGAAACGCA
CATGACACCAGCGGATGCACATAGTCTTGCAGCGGCGTTTGCTGCTGGAA
CATGTCCAAAGCTTAATCATCTTGACCTTTCAGATAATCCCGAAATGGGG
GAGGAGGGTGCCCAGGCCTTGGGTCTTGCCTTGGAACATGGGGCTTTACC
ATTGCTGCAGGGTCTGTTGTTGTTCGGGGATAAAATTTATGGGGGGGGGT
TAGCGATCGCGAGGGCTATGCAGAGTGGTGGGTTGGCGCAGCTTGAGATC
CTTGATTTGTCCGGCGCGGCGTTGGGTACGGCGTGTATGCTGGAGTTGAG
CAAAGTGTTGACGGATGGACATTGTCCGCTCTTAGAGCAGCTAGGAATGA
GCGATAATAATGTGGAGGAGAAGGGAGTGGAAGCGCTGGCGGTCGCGCTC
GGGGCGAGAGCAAGGGCGGGTTGCGCCTATTTGTGTAAGCTGCACTTGGG
GGGGAATGTGGTGGGTTCACGAGGAGCGGAGGAGCTAGCCAAGGCGTTGT
GTCAGGATGGTTGTGGAGCAAAACTGGCACTCCTTGAGTTGCATAGTGCT
CGTTTGGGACGTGAGGGCATATGTGTTATTGCCGAAGCTTTGAAGAGTGG
AGCGTGTGATGGCTTAAGGGAGTTGTGGTTGGACGATAATACAGAAGGAG
AGGAGGATGGAGGGATTGCGGTGCAAGATGTCATGGCTGTGCTAGCTGCG
GGTGCATTACCAGCTCTGGAAGCTCTCGGGTTGAATTGGACAGGGTTGGG
GAGTAGTGGTGCGGCAGCCTTGGCTTCAGCTCTTACTTCTTATCCTCGTC
CTAAGTTGCATCGGCTCGATTTGAGGTCTACCTCTATCACCGGGACGGCC
CTTTTACCCCTGGTGGATGCGTTGTGTAAGCAGGCGTGCCCTTCCCTGCG
TTGGTTGGACCTGAGTGGAAATGCCCTCTTTCTTAACGGGGCGCGAGAAC
TGGCCCGAGCGCTCGTAGGAGGGGCAGGAAAGAACTTGCGGAGACTGGAT
TTACATGCCGTTGGGCTGGAAACGGAGGGGATGAGAGAGATCGCGCAGGC
ATTAAAGATTAATGCATGTCCTGAGTTAATGGGGTTGGGCTTGGCTTTGA
ATCGGATAGGGTGCCAGGGAGCGGTGGCTTTGGGAGATGCTATGGCGGCA
GGGGGATTACCGCATTTGGTGGGGTTGGAAGTGCATAAGAATGAGTTAGG
GGATGAAGGAGTGATGGCGATTTCGAATGTTTTGACTGCAGGGGCCTGTC
CGCTACTGCTTTACCTTGGGATGTCGCGGAGTCGAGCGACTGATTTGAGT
TTGCGCGTGTTGGTGGAAGGGATAAAAACAGGTCCTGGCCTGGCAAAGCT
CGAGCGGCTGAATCTTCAAGATAATTGGATCAGTAGAGATGGCTTGGCGC
GGTTACAAGAGACTGTGGCTCTAGTTGCAGCTCGGGGCGGGAGACTTCGG
TTAGAATTTTCGGGGAATGGGGCTCAGCAGATTTTGAGGAGGGAGGCAGG
GTGGATTTTGAATGAAGGGAAAAGAAAAGATGATGAGCCAGTGAAAGAAA
AGAAATGGAAAAGAAGATAA

protein sequence of jgi.p|Nanoce1779_2|568096

>mRNA_7752-protein ID=mRNA_7752-protein|Name=jgi.p|Nanoce1779_2|568096|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MASSSSLSGMQSCSLKAAGMLEGMEVTDGEGVEEERSVADGVGEDAGEQL
RRQNGTGCVELGYETDVKQPIVSLLQYTPLVRRMRYRGEVCTLAGALISS
ATPRLSRLLALDLSETHMTPADAHSLAAAFAAGTCPKLNHLDLSDNPEMG
EEGAQALGLALEHGALPLLQGLLLFGDKIYGGGLAIARAMQSGGLAQLEI
LDLSGAALGTACMLELSKVLTDGHCPLLEQLGMSDNNVEEKGVEALAVAL
GARARAGCAYLCKLHLGGNVVGSRGAEELAKALCQDGCGAKLALLELHSA
RLGREGICVIAEALKSGACDGLRELWLDDNTEGEEDGGIAVQDVMAVLAA
GALPALEALGLNWTGLGSSGAAALASALTSYPRPKLHRLDLRSTSITGTA
LLPLVDALCKQACPSLRWLDLSGNALFLNGARELARALVGGAGKNLRRLD
LHAVGLETEGMREIAQALKINACPELMGLGLALNRIGCQGAVALGDAMAA
GGLPHLVGLEVHKNELGDEGVMAISNVLTAGACPLLLYLGMSRSRATDLS
LRVLVEGIKTGPGLAKLERLNLQDNWISRDGLARLQETVALVAARGGRLR
LEFSGNGAQQILRREAGWILNEGKRKDDEPVKEKKWKRR*

mRNA from alignment at scaffold_21:240515..243058+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Nanoce1779_2|568096|organism=Nannochloropsis oceanica|type=mRNA|length=2544bp|location=Sequence derived from alignment at scaffold_21:240515..243058+ (Nannochloropsis oceanica)
ATGGCGAGTAGCAGCAGTCTCAGTGGCATGCAGTCTTGCTCATTAAAGGC
TGCCGGGATGTTGGAGGGTATGGAGGTTACTGATGGAGAAGGTGTGGAAG
AGGAAAGGTCGGTAGCGGATGGGGTTGGTGAAGATGCAGGGGAACAGTTG
AGACGACAAAATGGGACAGGATGTGTAGAACTAGGGTATGAAACTGACGT
AAAGCAGCCTATCGTCTCCTTACTGCAATACACTCCCCTCGTCCGCCGTA
TGCGCTACCGGGGCGAGGTCTGCACGCTCGCAGGTGCCCTCATTTCTTCT
GCCACCCCCCGCCTTTCACGACTCCTTGCGCTGGATTTGTCTGAAACGCA
CATGACACCAGCGGATGCACATAGTCTTGCAGCGGCGTTTGCTGCTGGAA
CATGTCCAAAGCTTAATCATCTTGACCTTTCAGATAATCCCGAAATGGGG
GAGGAGGGTGCCCAGGCCTTGGGTCTTGCCTTGGAACATGGGGCTTTACC
ATTGCTGCAGGGTCTGTTGTTGTTCGGGGATAAAATTTATGGGGGGGGGT
TAGCGATCGCGAGGGCTATGCAGAGTGGTGGGTTGGCGCAGCTTGAGATC
CTTGATTTGTCCGGCGCGGCGTTGGGTACGGCGTGTATGCTGGAGTTGAG
CAAAGTGTTGACGGATGGACATTGTCCGCTCTTAGAGCAGCTAGGAATGA
GCGATAATAATGTGGAGGAGAAGGGAGTGGAAGCGCTGGCGGTCGCGCTC
GGGGCGAGAGCAAGGGCGGGTTGCGCCTATTTGTGTAAGCTGCACTTGGG
GGGGAATGTGGTGGGTTCACGAGGAGCGGAGGAGCTAGCCAAGGCGTTGT
GTCAGGATGGTTGTGGAGCAAAACTGGCACTCCTTGAGTTGCATAGTGCT
CGTTTGGGACGTGAGGGCATATGTGTTATTGCCGAAGCTTTGAAGAGTGG
AGCGTGTGATGGCTTAAGGGAGTTGTGGTTGGACGATAATACAGAAGGAG
AGGAGGATGGAGGGATTGCGGTGCAAGATGTCATGGCTGTGCTAGCTGCG
GGTGCATTACCAGCTCTGGAAGCTCTCGGGTTGAATTGGACAGGGTTGGG
GAGTAGTGGTGCGGCAGCCTTGGCTTCAGCTCTTACTTCTTATCCTCGTC
CTAAGTTGCATCGGCTCGATTTGAGGTCTACCTCTATCACCGGGACGGCC
CTTTTACCCCTGGTGGATGCGTTGTGTAAGCAGGCGTGCCCTTCCCTGCG
TTGGTTGGACCTGAGTGGAAATGCCCTCTTTCTTAACGGGGCGCGAGAAC
TGGCCCGAGCGCTCGTAGGAGGGGCAGGAAAGAACTTGCGGAGACTGGAT
TTACATGCCGTTGGGCTGGAAACGGAGGGGATGAGAGAGATCGCGCAGGC
ATTAAAGATTAATGCATGTCCTGAGTTAATGGGGTTGGGCTTGGCTTTGA
ATCGGATAGGGTGCCAGGGAGCGGTGGCTTTGGGAGATGCTATGGCGGCA
GGGGGATTACCGCATTTGGTGGGGTTGGAAGTGCATAAGAATGAGTTAGG
GGATGAAGGAGTGATGGCGATTTCGAATGTTTTGACTGCAGGGGCCTGTC
CGCTACTGCTTTACCTTGGGATGTCGCGGAGTCGAGCGACTGATTTGAGT
TTGCGCGTGTTGGTGGAAGGGATAAAAACAGGTCCTGGCCTGGCAAAGCT
CGAGCGGCTGAATCTTCAAGATAATTGGATCAGTAGAGATGGCTTGGCGC
GGTTACAAGAGACTGTGGCTCTAGTTGCAGCTCGGGGCGGGAGACTTCGG
TTAGAATTTTCGGGGAATGGGGCTCAGCAGATTTTGAGGAGGGAGGCAGG
GTGGATTTTGAATGGTACCCGGCGCATCTGTGTGGGATTTGTAGTGGGAG
GAGGTGCAGTTTTTGGGGCATTAACTATCAAACTTGCGAGGGCGTGCTTG
GAGATTCTTCTGATAGAGGAGGGGGGGATTATTTGCTCGTGGTGGGCTTT
GTCGACTTTGCTAGTGTTGCTTGTGGTGGAGGCTGCTGTGGTCGGCTTTG
TGCAGAGCTATGGTCTTGTCCGGGCTTGGAAACAAGCACCTAGCAGTAGC
GACGCTGTAACTGGTGCTGCTGCTACTAATGCTGCGGCTGCTGGTGCTGC
TACTACTGGCGCCGCTGCTACTGGTGCTGCTGCTACTGGTGCTGCTGCTG
TTATTAATTGGGATGAGGATGACGAAGAGGACGTGGAGGTCGAGGGGGGT
CGGGTGCCTGGATATGTCATTTGGGCGATTCTGGCGGGGGATACGGCTGT
GGCGGCGTTGGGGGGCATGATGATGTGTTGGTGGAATGCGGGACTGCTTT
GTCTGTGGATAGCTGGGGTCATCATGGGCTTTGCAATTGTATTGGGGAAG
GCTGGGGGATATTGAAAAATGGTGAGAGGAGAGAAGGAAAAGACGACTGT
TGACTTTATGACTGACTAATTAAGTTTGTTCTGTGCAGAAGGGAAAAGAA
AAGATGATGAGCCAGTGAAAGAAAAGAAATGGAAAAGAAGATAA

Coding sequence (CDS) from alignment at scaffold_21:240515..243058+

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Nanoce1779_2|568096|organism=Nannochloropsis oceanica|type=CDS|length=3840bp|location=Sequence derived from alignment at scaffold_21:240515..243058+ (Nannochloropsis oceanica)
ATGGCGAGTAGCAGCAGTCTCAGTGGCATGCAGTCTTGCTCATTAAAGGC
TGCCGGGATGTTGGAGGGTATGGAGGTTACTGATGGAGAAGGTGTGGAAG
AGGAAAGGTCGGTAGCGGATGGGGTTGGTGAAGATGCAGGGGAACAGTTG
AGACGACAAAATGGGACAGGATGTGTAGAACTAGGGTATGAAACTGACGT
AAAGCAGCCTATCGTCTCCTTACTGCAATACACTCCCCTCGTCCGCCGTA
TGCGCTACCGGGGCGAGGTCTGCACGCTCGCAGGTGCCCTCATTTCTTCT
GCCACCCCCCGCCTTTCACGACTCCTTGCGCTGGATTTGTCTGAAACGCA
CATGACACCAGCGGATGCACATAGTCTTGCAGCGGCGTTTGCTGCTGGAA
CATGTCCAAAGCTTAATCATCTTGACCTTTCAGATAATCCCGAAATGGGG
GAGGAGGGTGCCCAGGCCTTGGGTCTTGCCTTGGAACATGGGGCTTTACC
ATTGCTGCAGGGTCTGTTGTTGTTCGGGGATAAAATTTATGGGGGGGGGT
TAGCGATCGCGAGGGCTATGCAGAGTGGTGGGTTGGCGCAGCTTGAGATC
CTTGATTTGTCCGGCGCGGCGTTGGGTACGGCGTGTATGCTGGAGTTGAG
CAAAGTGTTGACGGATGGACATTGTCCGCTCTTAGAGCAGCTAGGAATGA
GCGATAATAATGTGGAGGAGAAGGGAGTGGAAGCGCTGGCGGTCGCGCTC
GGGGCGAGAGCAAGGGCGGGTTGCGCCTATTTGTGTAAGCTGCACTTGGG
GGGGAATGTGGTGGGTTCACGAGGAGCGGAGGAGCTAGCCAAGGCGTTGT
GTCAGGATGGTTGTGGAGCAAAACTGGCACTCCTTGAGTTGCATAGTGCT
CGTTTGGGACGTGAGGGCATATGTGTTATTGCCGAAGCTTTGAAGAGTGG
AGCGTGTGATGGCTTAAGGGAGTTGTGGTTGGACGATAATACAGAAGGAG
AGGAGGATGGAGGGATTGCGGTGCAAGATGTCATGGCTGTGCTAGCTGCG
GGTGCATTACCAGCTCTGGAAGCTCTCGGGTTGAATTGGACAGGGTTGGG
GAGTAGTGGTGCGGCAGCCTTGGCTTCAGCTCTTACTTCTTATCCTCGTC
CTAAGTTGCATCGGCTCGATTTGAGGTCTACCTCTATCACCGGGACGGCC
CTTTTACCCCTGGTGGATGCGTTGTGTAAGCAGGCGTGCCCTTCCCTGCG
TTGGTTGGACCTGAGTGGAAATGCCCTCTTTCTTAACGGGGCGCGAGAAC
TGGCCCGAGCGCTCGTAGGAGGGGCAGGAAAGAACTTGCGGAGACTGGAT
TTACATGCCGTTGGGCTGGAAACGGAGGGGATGAGAGAGATCGCGCAGGC
ATTAAAGATTAATGCATGTCCTGAGTTAATGGGGTTGGGCTTGGCTTTGA
ATCGGATAGGGTGCCAGGGAGCGGTGGCTTTGGGAGATGCTATGGCGGCA
GGGGGATTACCGCATTTGGTGGGGTTGGAAGTGCATAAGAATGAGTTAGG
GGATGAAGGAGTGATGGCGATTTCGAATGTTTTGACTGCAGGGGCCTGTC
CGCTACTGCTTTACCTTGGGATGTCGCGGAGTCGAGCGACTGATTTGAGT
TTGCGCGTGTTGGTGGAAGGGATAAAAACAGGTCCTGGCCTGGCAAAGCT
CGAGCGGCTGAATCTTCAAGATAATTGGATCAGTAGAGATGGCTTGGCGC
GGTTACAAGAGACTGTGGCTCTAGTTGCAGCTCGGGGCGGGAGACTTCGG
TTAGAATTTTCGGGGAATGGGGCTCAGCAGATTTTGAGGAGGGAGGCAGG
GTGGATTTTGAATGAAGGGAAAAGAAAAGATGATGAGCCAGTGAAAGAAA
AGAAATGGAAAAGAAGATAAATGGCGAGTAGCAGCAGTCTCAGTGGCATG
CAGTCTTGCTCATTAAAGGCTGCCGGGATGTTGGAGGGTATGGAGGTTAC
TGATGGAGAAGGTGTGGAAGAGGAAAGGTCGGTAGCGGATGGGGTTGGTG
AAGATGCAGGGGAACAGTTGAGACGACAAAATGGGACAGGATGTGTAGAA
CTAGGGTATGAAACTGACGTAAAGCAGCCTATCGTCTCCTTACTGCAATA
CACTCCCCTCGTCCGCCGTATGCGCTACCGGGGCGAGGTCTGCACGCTCG
CAGGTGCCCTCATTTCTTCTGCCACCCCCCGCCTTTCACGACTCCTTGCG
CTGGATTTGTCTGAAACGCACATGACACCAGCGGATGCACATAGTCTTGC
AGCGGCGTTTGCTGCTGGAACATGTCCAAAGCTTAATCATCTTGACCTTT
CAGATAATCCCGAAATGGGGGAGGAGGGTGCCCAGGCCTTGGGTCTTGCC
TTGGAACATGGGGCTTTACCATTGCTGCAGGGTCTGTTGTTGTTCGGGGA
TAAAATTTATGGGGGGGGGTTAGCGATCGCGAGGGCTATGCAGAGTGGTG
GGTTGGCGCAGCTTGAGATCCTTGATTTGTCCGGCGCGGCGTTGGGTACG
GCGTGTATGCTGGAGTTGAGCAAAGTGTTGACGGATGGACATTGTCCGCT
CTTAGAGCAGCTAGGAATGAGCGATAATAATGTGGAGGAGAAGGGAGTGG
AAGCGCTGGCGGTCGCGCTCGGGGCGAGAGCAAGGGCGGGTTGCGCCTAT
TTGTGTAAGCTGCACTTGGGGGGGAATGTGGTGGGTTCACGAGGAGCGGA
GGAGCTAGCCAAGGCGTTGTGTCAGGATGGTTGTGGAGCAAAACTGGCAC
TCCTTGAGTTGCATAGTGCTCGTTTGGGACGTGAGGGCATATGTGTTATT
GCCGAAGCTTTGAAGAGTGGAGCGTGTGATGGCTTAAGGGAGTTGTGGTT
GGACGATAATACAGAAGGAGAGGAGGATGGAGGGATTGCGGTGCAAGATG
TCATGGCTGTGCTAGCTGCGGGTGCATTACCAGCTCTGGAAGCTCTCGGG
TTGAATTGGACAGGGTTGGGGAGTAGTGGTGCGGCAGCCTTGGCTTCAGC
TCTTACTTCTTATCCTCGTCCTAAGTTGCATCGGCTCGATTTGAGGTCTA
CCTCTATCACCGGGACGGCCCTTTTACCCCTGGTGGATGCGTTGTGTAAG
CAGGCGTGCCCTTCCCTGCGTTGGTTGGACCTGAGTGGAAATGCCCTCTT
TCTTAACGGGGCGCGAGAACTGGCCCGAGCGCTCGTAGGAGGGGCAGGAA
AGAACTTGCGGAGACTGGATTTACATGCCGTTGGGCTGGAAACGGAGGGG
ATGAGAGAGATCGCGCAGGCATTAAAGATTAATGCATGTCCTGAGTTAAT
GGGGTTGGGCTTGGCTTTGAATCGGATAGGGTGCCAGGGAGCGGTGGCTT
TGGGAGATGCTATGGCGGCAGGGGGATTACCGCATTTGGTGGGGTTGGAA
GTGCATAAGAATGAGTTAGGGGATGAAGGAGTGATGGCGATTTCGAATGT
TTTGACTGCAGGGGCCTGTCCGCTACTGCTTTACCTTGGGATGTCGCGGA
GTCGAGCGACTGATTTGAGTTTGCGCGTGTTGGTGGAAGGGATAAAAACA
GGTCCTGGCCTGGCAAAGCTCGAGCGGCTGAATCTTCAAGATAATTGGAT
CAGTAGAGATGGCTTGGCGCGGTTACAAGAGACTGTGGCTCTAGTTGCAG
CTCGGGGCGGGAGACTTCGGTTAGAATTTTCGGGGAATGGGGCTCAGCAG
ATTTTGAGGAGGGAGGCAGGGTGGATTTTGAATGAAGGGAAAAGAAAAGA
TGATGAGCCAGTGAAAGAAAAGAAATGGAAAAGAAGATAA

Synonyms

Publications