jgi.p|Nanoce1779_2|599900, mRNA_7751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599900
Unique Name	mRNA_7751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1628
Alignment location	scaffold_21:237538..239635 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599986
Track	FilteredModels2
ProteinId	599900

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:237538..239635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599900	gene_7751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599900	mRNA_7751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7751	CDS_7751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:237538..239635+
coding sequence from alignment at scaffold_21:237538..239635+

mRNA sequence

>mRNA_7751 ID=mRNA_7751|Name=jgi.p|Nanoce1779_2|599900|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp
GCGGAGAGAAATATTATTTTCTTTGAAGATAAATTGTCCGCACGTAGCCC
CGAAGAAAGAAGCTGTCCACATGCTTTTTCGCAGTTGTTCGGAGCCGAAC
TCGGTTTGATGACTGAAGGCTGTTCCGAAGCGCTTTGTTTTTGGCTTTTC
TGGCGTACTAATGTGTTAGCCAACTCATCCGTATCACCACGCTCTACAGT
CGCGTATAGCAATCAAAGTAGGAAGCATGAGCCCCACGACTCACCCCAAG
ACTCACCCTCAGCATCATCACGCGGCGCCTGTCGACAACGAGGCGGGGTC
TTCTAAGAAGCATCACGACGCGGAGGACCGCCACCATCATCATCACGGGC
GCGGGGAGCATGAGCACCGCCACCACGCGGGCGAGCACACCCACGCCCAC
ACCCACGGTCATGGACACCATGAACAAGAACACAGTCATGCGCACAGCCA
CGATATTCCGCATCACTCCCACCATCATCACCACCACCACCACGAGAAGG
AGGAGGGTGCTTCCGAAGATGGCGCGCACGCCCACTCGCACAGACATGCC
CACCACAACTCCCTTTCTCATCATCACGGTCATGGCCATGGCGAGCACGG
CCATACCCATGAACCCCTTGAATCCCCTGGTACCTTTGATTCGCGCGAAC
AGCCCTTGAAACGGGACTATTTGGAGCGAGCTTTCACCGTGGGTGTGGGC
GGGCCAGTGGGCTCGGGCAAGACGGCCTTGGTGTATGCGCTGTGCAAGGC
TCTTCGTCGCGACCATAGCATTGCTGCGATCACCAACGACATTTTTACCC
AAGAAGATGGAGAATTCCTCCTCCGCCACTCCGCGCTCGAACCAGGTCGC
ATTCAAGCCATCGAGACGGGTGGGTGCCCACACGCTGCTATCCGCGAGGA
CATCTCTGCGAACCTTGCCGCCTGTGAAGGCATGACGGCCAAGCACAACG
CTGATATAGTTCTTGTTGAGTCGGGTGGTGATAATCTTGCCGCAAACTTC
AGTCGAGAGCTTGCGGATTACATAATTTATGTGATTGATGTAGCCGGTGG
CGACAAGGTGCCGCGCAAAGGCGGGCCGGGTATTACACAGTCCGACCTCT
TAGTTATCAACAAGACGGATCTTGCCGAGGCTGTCGGGGCGGACTTGGAG
CGCATGGCAAGCGAGGCGGCAGTGATGCGTGGGGAGGGACCCGTGGTTAT
GGCTCAGGTCAAGTTTGATGTTGGAGTGCAAGACATTTTGCAATACATTC
TGACATCTTGGAAACTGGCGACAGGCATCATCCGGCCCAAAAAGACCACG
CCGGTGGGGTCCGGAGATGTGGAGGAGGGGGTGATAACAGAAGGGACAGT
ATAGGCCTATGTGGCTTCGTCGTTTCAGGAGGGGGAAAAAAGGTGAATGG
GGAGGAGTTTCGAGACGAGGTCCAAAGCCCGGAAATAAAAGTAGGGTCCA
ACTCTGAGAAAACTATTGGGGCGGGGGAGGTTGTCATGCGGTAGTATCGT
CAAGTCAAAAAGTCACACATAGTCTTTACATTCGTGGGTTAGGTGAGAAA
GACGAAGAGAACGAACAAGAAATTATTGAAGACGACGAATAAGAAGAAAA
GAAGGAGGAAGAAGTTAAACTATTTTAT

protein sequence of jgi.p|Nanoce1779_2|599900

>mRNA_7751-protein ID=mRNA_7751-protein|Name=jgi.p|Nanoce1779_2|599900|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MSPTTHPKTHPQHHHAAPVDNEAGSSKKHHDAEDRHHHHHGRGEHEHRHH
AGEHTHAHTHGHGHHEQEHSHAHSHDIPHHSHHHHHHHHEKEEGASEDGA
HAHSHRHAHHNSLSHHHGHGHGEHGHTHEPLESPGTFDSREQPLKRDYLE
RAFTVGVGGPVGSGKTALVYALCKALRRDHSIAAITNDIFTQEDGEFLLR
HSALEPGRIQAIETGGCPHAAIREDISANLAACEGMTAKHNADIVLVESG
GDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLA
EAVGADLERMASEAAVMRGEGPVVMAQVKFDVGVQDILQYILTSWKLATG
IIRPKKTTPVGSGDVEEGVITEGTV*

mRNA from alignment at scaffold_21:237538..239635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7751 ID=mRNA_7751|Name=jgi.p|Nanoce1779_2|599900|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp|location=Sequence derived from alignment at scaffold_21:237538..239635+ (Nannochloropsis oceanica)
GCGGAGAGAAATATTATTTTCTTTGAAGATAAATTGTCCGCACGTAGCCC
CGAAGAAAGAAGCTGTCCACATGCTTTTTCGCAGTTGTTCGGAGCCGAAC
TCGGTTTGATGACTGAAGGCTGTTCCGAAGCGCTTTGTTTTTGGCTTTTC
TGGCGTACTAATGTGTTAGCCAACTCATCCGTATCACCACGCTCTACAGT
CGCGTATAGCAATCAAAGTAGGAAGCATGAGCCCCACGACTCACCCCAAG
ACTCACCCTCAGCATCATCACGCGGCGCCTGTCGACAACGAGGCGGGGTC
TTCTAAGAAGCATCACGGTTAGTTTCTTTTGCTTGCACAAAGGGCTCTCC
TCCCATTTCCCCTGCCACACGCACGTGCGCGCGCACACACACACACACAC
AAAAAGTTTGTATTTTAAGTTCAACACATATTTATTGGCGTGCGGGCACC
GCGGTCGATGCAGGATGGCCGCGGCAATTTTCTTCTGCCTTATCTTCAAC
CTATCTCTTGTATTCCCCCTTGACAGACGCGGAGGACCGCCACCATCATC
ATCACGGTACGTGACTCATGCTTAGAGACGGCTGCTCATTTCTCACTATT
CTTCTTCTGACTCCTCTTTCATGTCCCTTATTCTTCCTTTGCAGGGCGCG
GGGAGCATGAGCACCGCCACCACGCGGGCGAGCACACCCACGCCCACACC
CACGGTCATGGACACCATGAACAAGAACACAGTCATGCGCACAGCCACGA
TATTCCGCATCACTCCCACCATCATCACCACCACCACCACGAGAAGGAGG
AGGGTGCTTCCGAAGATGGCGCGCACGCCCACTCGCACAGACATGCCCAC
CACAACTCCCTTTCTCATCATCACGGTCATGGCCATGGCGAGCACGGCCA
TACCCATGAACCCCTTGAATCCCCTGGTACCTTTGATTCGCGCGAACAGC
CCTTGAAACGGGACTATTTGGAGCGAGCTTTCACCGTGGGTGTGGGCGGG
CCAGTGGGCTCGGGCAAGACGGCCTTGGTGTATGCGCTGTGCAAGGCTCT
TCGTCGCGACCATAGCATTGCTGCGGTAAGCATGGCGGGGCGAGGGAGGG
GGTGGAAGAAGAAATTTGTACTAAGTGGTAGTGGGCGTATGTAGTGTTCC
GCCCTGACCTTTTCCATTCCTAAGCCAGTCGATATATCAACCACCCACCC
CTCAACTCTATTTCTATCTCTCCTTTGACTCCACCCCTGTCTTTCAAGAT
CACCAACGACATTTTTACCCAAGAAGATGGAGAATTCCTCCTCCGCCACT
CCGCGCTCGAACCAGGTCGCATTCAAGCCATCGAGACGGGTGGGTGCCCA
CACGCTGCTATCCGCGAGGACATCTCTGCGAACCTTGCCGCCTGTGAAGG
CATGACGGCCAAGCACAACGCTGATATAGTTCTTGTTGAGTCGGGTGGTG
ATAATCTTGCCGCAAACTTCAGTCGAGAGCTTGCGGATTACATAATTTAT
GTGATTGATGTAGCCGGTGGCGACAAGGTGCCGCGCAAAGGCGGGCCGGG
TATTACACAGTCCGACCTCTTAGTTATCAACAAGACGGATCTTGCCGAGG
CTGTCGGGGCGGACTTGGAGCGCATGGCAAGCGAGGCGGCAGTGATGCGT
GGGGAGGGACCCGTGGTTATGGCTCAGGTCAAGTTTGATGTTGGAGTGCA
AGACATTTTGCAATACATTCTGACATCTTGGAAACTGGCGACAGGCATCA
TCCGGCCCAAAAAGACCACGCCGGTGGGGTCCGGAGATGTGGAGGAGGGG
GTGATAACAGAAGGGACAGTATAGGCCTATGTGGCTTCGTCGTTTCAGGA
GGGGGAAAAAAGGTGAATGGGGAGGAGTTTCGAGACGAGGTCCAAAGCCC
GGAAATAAAAGTAGGGTCCAACTCTGAGAAAACTATTGGGGCGGGGGAGG
TTGTCATGCGGTAGTATCGTCAAGTCAAAAAGTCACACATAGTCTTTACA
TTCGTGGGTTAGGTGAGAAAGACGAAGAGAACGAACAAGAAATTATTGAA
GACGACGAATAAGAAGAAAAGAAGGAGGAAGAAGTTAAACTATTTTAT

Coding sequence (CDS) from alignment at scaffold_21:237538..239635+

>mRNA_7751 ID=mRNA_7751|Name=jgi.p|Nanoce1779_2|599900|organism=Nannochloropsis oceanica|type=CDS|length=4512bp|location=Sequence derived from alignment at scaffold_21:237538..239635+ (Nannochloropsis oceanica)
ATGAGCCCCACGACTCACCCCAAGACTCACCCTCAGCATCATCACGCGGC
GCCTGTCGACAACGAGGCGGGGTCTTCTAAGAAGCATCACGACGCGGAGG
ACCGCCACCATCATCATCACGGGCGCGGGGAGCATGAGCACCGCCACCAC
GCGGGCGAGCACACCCACGCCCACACCCACGGTCATGGACACCATGAACA
AGAACACAGTCATGCGCACAGCCACGATATTCCGCATCACTCCCACCATC
ATCACCACCACCACCACGAGAAGGAGGAGGGTGCTTCCGAAGATGGCGCG
CACGCCCACTCGCACAGACATGCCCACCACAACTCCCTTTCTCATCATCA
CGGTCATGGCCATGGCGAGCACGGCCATACCCATGAACCCCTTGAATCCC
CTGGTACCTTTGATTCGCGCGAACAGCCCTTGAAACGGGACTATTTGGAG
CGAGCTTTCACCGTGGGTGTGGGCGGGCCAGTGGGCTCGGGCAAGACGGC
CTTGGTGTATGCGCTGTGCAAGGCTCTTCGTCGCGACCATAGCATTGCTG
CGATCACCAACGACATTTTTACCCAAGAAGATGGAGAATTCCTCCTCCGC
CACTCCGCGCTCGAACCAGGTCGCATTCAAGCCATCGAGACGGGTGGGTG
CCCACACGCTGCTATCCGCGAGGACATCTCTGCGAACCTTGCCGCCTGTG
AAGGCATGACGGCCAAGCACAACGCTGATATAGTTCTTGTTGAGTCGGGT
GGTGATAATCTTGCCGCAAACTTCAGTCGAGAGCTTGCGGATTACATAAT
TTATGTGATTGATGTAGCCGGTGGCGACAAGGTGCCGCGCAAAGGCGGGC
CGGGTATTACACAGTCCGACCTCTTAGTTATCAACAAGACGGATCTTGCC
GAGGCTGTCGGGGCGGACTTGGAGCGCATGGCAAGCGAGGCGGCAGTGAT
GCGTGGGGAGGGACCCGTGGTTATGGCTCAGGTCAAGTTTGATGTTGGAG
TGCAAGACATTTTGCAATACATTCTGACATCTTGGAAACTGGCGACAGGC
ATCATCCGGCCCAAAAAGACCACGCCGGTGGGGTCCGGAGATGTGGAGGA
GGGGGTGATAACAGAAGGGACAGTATAGATGAGCCCCACGACTCACCCCA
AGACTCACCCTCAGCATCATCACGCGGCGCCTGTCGACAACGAGGCGGGG
TCTTCTAAGAAGCATCACGACGCGGAGGACCGCCACCATCATCATCACGG
GCGCGGGGAGCATGAGCACCGCCACCACGCGGGCGAGCACACCCACGCCC
ACACCCACGGTCATGGACACCATGAACAAGAACACAGTCATGCGCACAGC
CACGATATTCCGCATCACTCCCACCATCATCACCACCACCACCACGAGAA
GGAGGAGGGTGCTTCCGAAGATGGCGCGCACGCCCACTCGCACAGACATG
CCCACCACAACTCCCTTTCTCATCATCACGGTCATGGCCATGGCGAGCAC
GGCCATACCCATGAACCCCTTGAATCCCCTGGTACCTTTGATTCGCGCGA
ACAGCCCTTGAAACGGGACTATTTGGAGCGAGCTTTCACCGTGGGTGTGG
GCGGGCCAGTGGGCTCGGGCAAGACGGCCTTGGTGTATGCGCTGTGCAAG
GCTCTTCGTCGCGACCATAGCATTGCTGCGATCACCAACGACATTTTTAC
CCAAGAAGATGGAGAATTCCTCCTCCGCCACTCCGCGCTCGAACCAGGTC
GCATTCAAGCCATCGAGACGGGTGGGTGCCCACACGCTGCTATCCGCGAG
GACATCTCTGCGAACCTTGCCGCCTGTGAAGGCATGACGGCCAAGCACAA
CGCTGATATAGTTCTTGTTGAGTCGGGTGGTGATAATCTTGCCGCAAACT
TCAGTCGAGAGCTTGCGGATTACATAATTTATGTGATTGATGTAGCCGGT
GGCGACAAGGTGCCGCGCAAAGGCGGGCCGGGTATTACACAGTCCGACCT
CTTAGTTATCAACAAGACGGATCTTGCCGAGGCTGTCGGGGCGGACTTGG
AGCGCATGGCAAGCGAGGCGGCAGTGATGCGTGGGGAGGGACCCGTGGTT
ATGGCTCAGGTCAAGTTTGATGTTGGAGTGCAAGACATTTTGCAATACAT
TCTGACATCTTGGAAACTGGCGACAGGCATCATCCGGCCCAAAAAGACCA
CGCCGGTGGGGTCCGGAGATGTGGAGGAGGGGGTGATAACAGAAGGGACA
GTATAGATGAGCCCCACGACTCACCCCAAGACTCACCCTCAGCATCATCA
CGCGGCGCCTGTCGACAACGAGGCGGGGTCTTCTAAGAAGCATCACGACG
CGGAGGACCGCCACCATCATCATCACGGGCGCGGGGAGCATGAGCACCGC
CACCACGCGGGCGAGCACACCCACGCCCACACCCACGGTCATGGACACCA
TGAACAAGAACACAGTCATGCGCACAGCCACGATATTCCGCATCACTCCC
ACCATCATCACCACCACCACCACGAGAAGGAGGAGGGTGCTTCCGAAGAT
GGCGCGCACGCCCACTCGCACAGACATGCCCACCACAACTCCCTTTCTCA
TCATCACGGTCATGGCCATGGCGAGCACGGCCATACCCATGAACCCCTTG
AATCCCCTGGTACCTTTGATTCGCGCGAACAGCCCTTGAAACGGGACTAT
TTGGAGCGAGCTTTCACCGTGGGTGTGGGCGGGCCAGTGGGCTCGGGCAA
GACGGCCTTGGTGTATGCGCTGTGCAAGGCTCTTCGTCGCGACCATAGCA
TTGCTGCGATCACCAACGACATTTTTACCCAAGAAGATGGAGAATTCCTC
CTCCGCCACTCCGCGCTCGAACCAGGTCGCATTCAAGCCATCGAGACGGG
TGGGTGCCCACACGCTGCTATCCGCGAGGACATCTCTGCGAACCTTGCCG
CCTGTGAAGGCATGACGGCCAAGCACAACGCTGATATAGTTCTTGTTGAG
TCGGGTGGTGATAATCTTGCCGCAAACTTCAGTCGAGAGCTTGCGGATTA
CATAATTTATGTGATTGATGTAGCCGGTGGCGACAAGGTGCCGCGCAAAG
GCGGGCCGGGTATTACACAGTCCGACCTCTTAGTTATCAACAAGACGGAT
CTTGCCGAGGCTGTCGGGGCGGACTTGGAGCGCATGGCAAGCGAGGCGGC
AGTGATGCGTGGGGAGGGACCCGTGGTTATGGCTCAGGTCAAGTTTGATG
TTGGAGTGCAAGACATTTTGCAATACATTCTGACATCTTGGAAACTGGCG
ACAGGCATCATCCGGCCCAAAAAGACCACGCCGGTGGGGTCCGGAGATGT
GGAGGAGGGGGTGATAACAGAAGGGACAGTATAGATGAGCCCCACGACTC
ACCCCAAGACTCACCCTCAGCATCATCACGCGGCGCCTGTCGACAACGAG
GCGGGGTCTTCTAAGAAGCATCACGACGCGGAGGACCGCCACCATCATCA
TCACGGGCGCGGGGAGCATGAGCACCGCCACCACGCGGGCGAGCACACCC
ACGCCCACACCCACGGTCATGGACACCATGAACAAGAACACAGTCATGCG
CACAGCCACGATATTCCGCATCACTCCCACCATCATCACCACCACCACCA
CGAGAAGGAGGAGGGTGCTTCCGAAGATGGCGCGCACGCCCACTCGCACA
GACATGCCCACCACAACTCCCTTTCTCATCATCACGGTCATGGCCATGGC
GAGCACGGCCATACCCATGAACCCCTTGAATCCCCTGGTACCTTTGATTC
GCGCGAACAGCCCTTGAAACGGGACTATTTGGAGCGAGCTTTCACCGTGG
GTGTGGGCGGGCCAGTGGGCTCGGGCAAGACGGCCTTGGTGTATGCGCTG
TGCAAGGCTCTTCGTCGCGACCATAGCATTGCTGCGATCACCAACGACAT
TTTTACCCAAGAAGATGGAGAATTCCTCCTCCGCCACTCCGCGCTCGAAC
CAGGTCGCATTCAAGCCATCGAGACGGGTGGGTGCCCACACGCTGCTATC
CGCGAGGACATCTCTGCGAACCTTGCCGCCTGTGAAGGCATGACGGCCAA
GCACAACGCTGATATAGTTCTTGTTGAGTCGGGTGGTGATAATCTTGCCG
CAAACTTCAGTCGAGAGCTTGCGGATTACATAATTTATGTGATTGATGTA
GCCGGTGGCGACAAGGTGCCGCGCAAAGGCGGGCCGGGTATTACACAGTC
CGACCTCTTAGTTATCAACAAGACGGATCTTGCCGAGGCTGTCGGGGCGG
ACTTGGAGCGCATGGCAAGCGAGGCGGCAGTGATGCGTGGGGAGGGACCC
GTGGTTATGGCTCAGGTCAAGTTTGATGTTGGAGTGCAAGACATTTTGCA
ATACATTCTGACATCTTGGAAACTGGCGACAGGCATCATCCGGCCCAAAA
AGACCACGCCGGTGGGGTCCGGAGATGTGGAGGAGGGGGTGATAACAGAA
GGGACAGTATAG

Synonyms

Publications