jgi.p|Nanoce1779_2|599892, mRNA_7750 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599892
Unique Name	mRNA_7750
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1790
Alignment location	scaffold_21:235663..237537 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599978
Track	FilteredModels2
ProteinId	599892

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:235663..237537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599892	gene_7750	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599892	mRNA_7750-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7750	CDS_7750	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:235663..237537+
coding sequence from alignment at scaffold_21:235663..237537+

mRNA sequence

>mRNA_7750 ID=mRNA_7750|Name=jgi.p|Nanoce1779_2|599892|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
CTTTGCAGCTCGAATATGTCCCTCGTATTTGAAAAGAGGAGACATGGGTC
AGGGACTTGGAAGCCACACACAGAGCTAGCTTGTGTCCCCGTATGTCTGA
CCCAAAACAGTAGGCTATAAACAGACTTGGCCAGCACATTCGCCATTCCC
ACAGTTACTGCGTCACACTGCTCGGCACACTGCTTGGACAGGTAAATTCT
GCGCACGACCACGAAGACTTTTTCTGGAGGACTGAACTGGCCCAGCAACC
ACGGGAACGACTCTGTGAACCAAGAAAGACGCGACAATGAAGTCCAGTAG
CAGCATCATTAACGACAAGAACTTATGCGGCAGCAGCAGAAGCGGCAGCA
GCAACCATGATCATGCCCTGCACCGCTGTCCGCTCCAAAAATGCAATGGC
TCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATGGCGATGCTGTGCGG
TGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGGATACTTCTACAGGA
ACGATTCTCACACACTCATGGACACTTTCCGACGCATTTTGGCCAAAGGC
TCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTAGGCTGTACCATCTC
GAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCACTTGGTCTGCATTC
AGCATTCCCCCACTGGCCTCTTCGCGACCGTCTTCATTGACGGCCAAAAC
GGCACCCAAACCGAAATTTCAGCGCCTGCCAACGACTTTCAAGGCCTGCG
CACAATTCTGGAAGAAGAGCTGATGCTAGCCCCGTTCGGACGCCGTGACC
CCCGCGGCCCTCGAGGCATGGAGACCCCCAACACGCAACAGCCTTGGGCC
ATGTTCACCCCTCAGGGCCTGCCTGTGGATAGCTTGCTTGACCTGCAAGA
AGGAGCAAACGACATATTGCTGTATGAAGGAGGACGCTTCATCTGGCCGG
GGGTAAGGGAAGGACATATCACAAGGGTAACCCAGTTGGACGGGCTAGGC
TCCATCGACATGCGGACCCTCTCCATGTCCCCCCTCGTCTTCGCTGTGGA
CGGCTTCTTGCTGGCGGAGGAGTGTCAGTATATCCGGGAGACCGCCCAAC
CTCACATGAGGCAGTCGGGGGTAAAATTGATGGACCACGATAAGGGTAAG
GCTGCCACAGAGTGGCGCACAAGCTCCACCCATTTCCTTCCCACCAGACG
CCATGAAGGCCTGCAGCGAATCGATCGTCGTGTGGCCGGATTGACGCGTC
AGCCGGTTGCGTTTCAGGAGGATGTGCAGGTGTTGAGGTACGAGCATACA
CAGCGGTATGATACGCACCATGACTACTTCGATCGTCGTCTATATGCCAA
GGACCCTGACACTATAAAGTTAATCGATGGTGGCAAACGAAATCGCATGG
CCACAGTCCTGTGGTATCTAAGCGACGTCTCTGCAGGTGGGGAAACTATC
TTTCCGCTCTACAATAGCCGTGGGGAAATGCACGAATTTCGCAATTGCGA
GAGGATGCATGGCGCTCTGCGATCTCCGCCCAAAGAAGGGAGTGTCATTA
TGTTCTACTCCTTGCTCCCTAATGGCGACCTGGACCACCGCAGTCTCCAT
GGTTCTTGTGCTGTCAAGGATGGAGTCAAGTGGGCGGCCAACAAGTGGAT
ATGGAATGACGAGATTTCTCATATTCTTGGGCATGCTTGATTTCGAGGTT
GGGGGTTTGGGGTGGGCGGAGGGCGGTCACAACGTGTGGCAGAGCAGGGA
GTGAAGGGGGAAAGTAGGAATGAGTACTGAAATACCGAGA

protein sequence of jgi.p|Nanoce1779_2|599892

>mRNA_7750-protein ID=mRNA_7750-protein|Name=jgi.p|Nanoce1779_2|599892|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MKSSSSIINDKNLCGSSRSGSSNHDHALHRCPLQKCNGSKRGGGYDGSFM
AMLCGALGAALVGYGVGYFYRNDSHTLMDTFRRILAKGSTPKFATGPSLV
GCTISNLFATQPVHGMHLVCIQHSPTGLFATVFIDGQNGTQTEISAPAND
FQGLRTILEEELMLAPFGRRDPRGPRGMETPNTQQPWAMFTPQGLPVDSL
LDLQEGANDILLYEGGRFIWPGVREGHITRVTQLDGLGSIDMRTLSMSPL
VFAVDGFLLAEECQYIRETAQPHMRQSGVKLMDHDKGKAATEWRTSSTHF
LPTRRHEGLQRIDRRVAGLTRQPVAFQEDVQVLRYEHTQRYDTHHDYFDR
RLYAKDPDTIKLIDGGKRNRMATVLWYLSDVSAGGETIFPLYNSRGEMHE
FRNCERMHGALRSPPKEGSVIMFYSLLPNGDLDHRSLHGSCAVKDGVKWA
ANKWIWNDEISHILGHA*

mRNA from alignment at scaffold_21:235663..237537+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7750 ID=mRNA_7750|Name=jgi.p|Nanoce1779_2|599892|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at scaffold_21:235663..237537+ (Nannochloropsis oceanica)
CTTTGCAGCTCGAATATGTCCCTCGTATTTGAAAAGAGGAGACATGGGTC
AGGGACTTGGAAGCCACACACAGAGCTAGCTTGTGTCCCCGTATGTCTGA
CCCAAAACAGTAGGCTATAAACAGACTTGGCCAGCACATTCGCCATTCCC
ACAGTTACTGCGTCACACTGCTCGGCACACTGCTTGGACAGGTAAATTCT
GCGCACGACCACGAAGACTTTTTCTGGAGGACTGAACTGGCCCAGCAACC
ACGGGAACGACTCTGTGAACCAAGAAAGACGCGACAATGAAGTCCAGTAG
CAGCATCATTAACGACAAGAACTTATGCGGCAGCAGCAGAAGCGGCAGCA
GCAACCATGATCATGCCCTGCACCGCTGTCCGCTCCAAAAATGCAATGGC
TCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATGGCGATGCTGTGCGG
TGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGGATACTTCTACAGGA
ACGATTCTCACACACTCATGGACACTTTCCGACGCATTTTGGCCAAAGGC
TCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTAGGCTGTACCATCTC
GAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCACTTGGTCTGCATTC
AGCATTCGTAAGTAATCAGCATTTTGGTCTTAATCTATTGAAGTTTCTAC
TCACACAACTCCCCTACCCATCCGCCTCACTCCACTCCACAGCCCCACTG
GCCTCTTCGCGACCGTCTTCATTGACGGCCAAAACGGCACCCAAACCGAA
ATTTCAGCGCCTGCCAACGACTTTCAAGGCCTGCGCACAATTCTGGAAGA
AGAGCTGATGCTAGCCCCGTTCGGACGCCGTGACCCCCGCGGCCCTCGAG
GCATGGAGACCCCCAACACGCAACAGCCTTGGGCCATGTTCACCCCTCAG
GGCCTGCCTGTGGATAGCTTGCTTGACCTGCAAGAAGGAGCAAACGACAT
ATTGCTGTATGAAGGAGGACGCTTCATCTGGCCGGGGGTAAGGGAAGGAC
ATATCACAAGGGTAACCCAGTTGGACGGGCTAGGCTCCATCGACATGCGG
ACCCTCTCCATGTCCCCCCTCGTCTTCGCTGTGGACGGCTTCTTGCTGGC
GGAGGAGTGTCAGTATATCCGGGAGACCGCCCAACCTCACATGAGGCAGT
CGGGGGTAAAATTGATGGACCACGATAAGGGTAAGGCTGCCACAGAGTGG
CGCACAAGCTCCACCCATTTCCTTCCCACCAGACGCCATGAAGGCCTGCA
GCGAATCGATCGTCGTGTGGCCGGATTGACGCGTCAGCCGGTTGCGTTTC
AGGAGGATGTGCAGGTGTTGAGGTACGAGCATACACAGCGGTATGATACG
CACCATGACTACTTCGATCGTCGTCTATATGCCAAGGACCCTGACACTAT
AAAGTTAATCGATGGTGGCAAACGAAATCGCATGGCCACAGTCCTGTGGT
ATCTAAGCGACGTCTCTGCAGGTGGGGAAACTATCTTTCCGCTCTACAAT
AGCCGTGGGGAAATGCACGAATTTCGCAATTGCGAGAGGATGCATGGCGC
TCTGCGATCTCCGCCCAAAGAAGGGAGTGTCATTATGTTCTACTCCTTGC
TCCCTAATGGCGACCTGGACCACCGCAGTCTCCATGGTTCTTGTGCTGTC
AAGGATGGAGTCAAGTGGGCGGCCAACAAGTGGATATGGAATGACGAGAT
TTCTCATATTCTTGGGCATGCTTGATTTCGAGGTTGGGGGTTTGGGGTGG
GCGGAGGGCGGTCACAACGTGTGGCAGAGCAGGGAGTGAAGGGGGAAAGT
AGGAATGAGTACTGAAATACCGAGA

Coding sequence (CDS) from alignment at scaffold_21:235663..237537+

>mRNA_7750 ID=mRNA_7750|Name=jgi.p|Nanoce1779_2|599892|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_21:235663..237537+ (Nannochloropsis oceanica)
ATGAAGTCCAGTAGCAGCATCATTAACGACAAGAACTTATGCGGCAGCAG
CAGAAGCGGCAGCAGCAACCATGATCATGCCCTGCACCGCTGTCCGCTCC
AAAAATGCAATGGCTCGAAACGCGGAGGAGGGTACGACGGCAGCTTCATG
GCGATGCTGTGCGGTGCCTTGGGGGCAGCTTTGGTGGGCTATGGAGTGGG
ATACTTCTACAGGAACGATTCTCACACACTCATGGACACTTTCCGACGCA
TTTTGGCCAAAGGCTCCACCCCAAAGTTCGCGACGGGCCCATCCCTGGTA
GGCTGTACCATCTCGAACCTCTTTGCCACCCAGCCTGTGCACGGTATGCA
CTTGGTCTGCATTCAGCATTCCCCCACTGGCCTCTTCGCGACCGTCTTCA
TTGACGGCCAAAACGGCACCCAAACCGAAATTTCAGCGCCTGCCAACGAC
TTTCAAGGCCTGCGCACAATTCTGGAAGAAGAGCTGATGCTAGCCCCGTT
CGGACGCCGTGACCCCCGCGGCCCTCGAGGCATGGAGACCCCCAACACGC
AACAGCCTTGGGCCATGTTCACCCCTCAGGGCCTGCCTGTGGATAGCTTG
CTTGACCTGCAAGAAGGAGCAAACGACATATTGCTGTATGAAGGAGGACG
CTTCATCTGGCCGGGGGTAAGGGAAGGACATATCACAAGGGTAACCCAGT
TGGACGGGCTAGGCTCCATCGACATGCGGACCCTCTCCATGTCCCCCCTC
GTCTTCGCTGTGGACGGCTTCTTGCTGGCGGAGGAGTGTCAGTATATCCG
GGAGACCGCCCAACCTCACATGAGGCAGTCGGGGGTAAAATTGATGGACC
ACGATAAGGGTAAGGCTGCCACAGAGTGGCGCACAAGCTCCACCCATTTC
CTTCCCACCAGACGCCATGAAGGCCTGCAGCGAATCGATCGTCGTGTGGC
CGGATTGACGCGTCAGCCGGTTGCGTTTCAGGAGGATGTGCAGGTGTTGA
GGTACGAGCATACACAGCGGTATGATACGCACCATGACTACTTCGATCGT
CGTCTATATGCCAAGGACCCTGACACTATAAAGTTAATCGATGGTGGCAA
ACGAAATCGCATGGCCACAGTCCTGTGGTATCTAAGCGACGTCTCTGCAG
GTGGGGAAACTATCTTTCCGCTCTACAATAGCCGTGGGGAAATGCACGAA
TTTCGCAATTGCGAGAGGATGCATGGCGCTCTGCGATCTCCGCCCAAAGA
AGGGAGTGTCATTATGTTCTACTCCTTGCTCCCTAATGGCGACCTGGACC
ACCGCAGTCTCCATGGTTCTTGTGCTGTCAAGGATGGAGTCAAGTGGGCG
GCCAACAAGTGGATATGGAATGACGAGATTTCTCATATTCTTGGGCATGC
TTGAATGAAGTCCAGTAGCAGCATCATTAACGACAAGAACTTATGCGGCA
GCAGCAGAAGCGGCAGCAGCAACCATGATCATGCCCTGCACCGCTGTCCG
CTCCAAAAATGCAATGGCTCGAAACGCGGAGGAGGGTACGACGGCAGCTT
CATGGCGATGCTGTGCGGTGCCTTGGGGGCAGCTTTGGTGGGCTATGGAG
TGGGATACTTCTACAGGAACGATTCTCACACACTCATGGACACTTTCCGA
CGCATTTTGGCCAAAGGCTCCACCCCAAAGTTCGCGACGGGCCCATCCCT
GGTAGGCTGTACCATCTCGAACCTCTTTGCCACCCAGCCTGTGCACGGTA
TGCACTTGGTCTGCATTCAGCATTCCCCCACTGGCCTCTTCGCGACCGTC
TTCATTGACGGCCAAAACGGCACCCAAACCGAAATTTCAGCGCCTGCCAA
CGACTTTCAAGGCCTGCGCACAATTCTGGAAGAAGAGCTGATGCTAGCCC
CGTTCGGACGCCGTGACCCCCGCGGCCCTCGAGGCATGGAGACCCCCAAC
ACGCAACAGCCTTGGGCCATGTTCACCCCTCAGGGCCTGCCTGTGGATAG
CTTGCTTGACCTGCAAGAAGGAGCAAACGACATATTGCTGTATGAAGGAG
GACGCTTCATCTGGCCGGGGGTAAGGGAAGGACATATCACAAGGGTAACC
CAGTTGGACGGGCTAGGCTCCATCGACATGCGGACCCTCTCCATGTCCCC
CCTCGTCTTCGCTGTGGACGGCTTCTTGCTGGCGGAGGAGTGTCAGTATA
TCCGGGAGACCGCCCAACCTCACATGAGGCAGTCGGGGGTAAAATTGATG
GACCACGATAAGGGTAAGGCTGCCACAGAGTGGCGCACAAGCTCCACCCA
TTTCCTTCCCACCAGACGCCATGAAGGCCTGCAGCGAATCGATCGTCGTG
TGGCCGGATTGACGCGTCAGCCGGTTGCGTTTCAGGAGGATGTGCAGGTG
TTGAGGTACGAGCATACACAGCGGTATGATACGCACCATGACTACTTCGA
TCGTCGTCTATATGCCAAGGACCCTGACACTATAAAGTTAATCGATGGTG
GCAAACGAAATCGCATGGCCACAGTCCTGTGGTATCTAAGCGACGTCTCT
GCAGGTGGGGAAACTATCTTTCCGCTCTACAATAGCCGTGGGGAAATGCA
CGAATTTCGCAATTGCGAGAGGATGCATGGCGCTCTGCGATCTCCGCCCA
AAGAAGGGAGTGTCATTATGTTCTACTCCTTGCTCCCTAATGGCGACCTG
GACCACCGCAGTCTCCATGGTTCTTGTGCTGTCAAGGATGGAGTCAAGTG
GGCGGCCAACAAGTGGATATGGAATGACGAGATTTCTCATATTCTTGGGC
ATGCTTGA

Synonyms

Publications