jgi.p|Nanoce1779_2|522717, mRNA_775 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522717
Unique NamemRNA_775
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1578
Alignment locationscaffold_2:405016..406827 -

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Properties
Property NameValue
TranscriptId522803
TrackFilteredModels2
ProteinId522717
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:405016..406827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522717gene_775Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522717mRNA_775-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_775CDS_775Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_775 ID=mRNA_775|Name=jgi.p|Nanoce1779_2|522717|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
ATGGTAGCCTTTTCTCAAGGTCTATTGGAGCCGGTAGGGCAGCACAGCCC
TTTGGCGACCTTACGGGGTGCGACTAACTCAAAGAGCTTGGCCCCCGCGG
AGCTGCGCGTGGCTGCAAGCCGCAACAGCGCGAATGATAACGCAGCAGCA
CCATCCTTACCATCTGACAATGCCGAAAAGAAGAAAAAGACTAAGAAAAA
GGATATATTCAATAGCGTGGAGGCCGTCGACAAGGTGTGGGTGGATGAGG
AGGAAAATCCCTTTGACAAGGACTGGGAGACGTTCCCCCCCTCCGAGCTC
GCGGACCACTGCGGTGTCTCGGATATTTTCTACTGGCAGCGTTACGATGA
AGAGATCTTGGCTGCTGCCGCCGCAGACGGGGCGGCGGTGGAGGTGAAGA
ACCCTTGGGCAAAGTTGGGACCGGAGAGGAAGTATGTGACGTTTGAGCCG
GACCATGGGGGGTGGAATAACATCCGAATGGCTATGGAGGTCGTCTTAGT
TTTCGCTTATGCTACTGGACGAACGTTGGTAATGCCACCGGAGCAAGGAA
TGTATCTATTGAACAAGGGCGATGCCCCCGACGACAATAAGTTACACTTT
TCTGACTTCTTTTACTTGAACCGGCTGCGGGAGAAGATGGAGATGATCGA
AATGAAGGACTTCTTGGAGGCAGAGGCCACGTCAGGCCATCTTGGACCGC
TTCCCCCTGGTAATCGCACGGACCTGGAAAGTGGCGAGCTATGGAGTTAT
TTGAATGGTCTGGGACAGGGGCCAGTGCGCTGGAACCCTTTCAAGGTGTG
TGTGGCTTTTACTGAGACTCCGGGCAAGGCCGTAGAGGAGCATTCGAAGG
AGCAGCAGGAGAGGTTGGACTTGTTTTGTGGGAAGCGAGAGCCAGTATTT
TATGATAAGGCGATGCAGGAGGCCAAGGTGATTCATTTCGGGTCGGGCGA
GGACATGCGTGTGTTGGCGCATTTTTACACTTTCGAGCACTTCATGGACC
CGGCTTTGGATAAGGCGGTGAAACGATTTGTCAGAAACTACATACATTAC
CGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCATTGCGGCAATGGAGAC
AGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCACATTCGCCGGGGAGACT
TGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGAGATCATTGAGACCACC
AAGGATATTTTGAATGAGGGGGAGACGATTTACGTTGCCACGGACGAGAA
GGACGCGGCTTATTTGGATGTGCTAAGGGCGCGATTTAATGTGTATTTTT
TGAATGATTTCCACGAGAGGGTGGGTTTGGGGAAGCTAAATCAGAATTAT
ATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGTCGCAGGTCTTCATTGG
GACGTGGTTCTCGACGTTCACGGGGTATATTACCCGGATGCGCGGGTACA
ATGGGTTTGATTATCGCTCGAATTGGTATCATTATAGTCTGCGGAAAGAC
TCGTTTCAGACGGAGTACTACTCACGGGACCCCTGGTATGTCCGTGAATG
GCCGGAAGGATGGGTGGATATTGATTAA
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protein sequence of jgi.p|Nanoce1779_2|522717

>mRNA_775-protein ID=mRNA_775-protein|Name=jgi.p|Nanoce1779_2|522717|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MVAFSQGLLEPVGQHSPLATLRGATNSKSLAPAELRVAASRNSANDNAAA
PSLPSDNAEKKKKTKKKDIFNSVEAVDKVWVDEEENPFDKDWETFPPSEL
ADHCGVSDIFYWQRYDEEILAAAAADGAAVEVKNPWAKLGPERKYVTFEP
DHGGWNNIRMAMEVVLVFAYATGRTLVMPPEQGMYLLNKGDAPDDNKLHF
SDFFYLNRLREKMEMIEMKDFLEAEATSGHLGPLPPGNRTDLESGELWSY
LNGLGQGPVRWNPFKVCVAFTETPGKAVEEHSKEQQERLDLFCGKREPVF
YDKAMQEAKVIHFGSGEDMRVLAHFYTFEHFMDPALDKAVKRFVRNYIHY
RDEVFCAAGRIIAAMETAAGPGGFKALHIRRGDLQFKEVKIPAEEIIETT
KDILNEGETIYVATDEKDAAYLDVLRARFNVYFLNDFHERVGLGKLNQNY
MGMVEQIVCSRSQVFIGTWFSTFTGYITRMRGYNGFDYRSNWYHYSLRKD
SFQTEYYSRDPWYVREWPEGWVDID*
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mRNA from alignment at scaffold_2:405016..406827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_775 ID=mRNA_775|Name=jgi.p|Nanoce1779_2|522717|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at scaffold_2:405016..406827- (Nannochloropsis oceanica)
ATGGTAGCCTTTTCTCAAGGTCTATTGGAGCCGGTAGGGCAGCACAGCCC
TTTGGCGACCTTACGGGGTGCGACTAACTCAAAGAGCTTGGCCCCCGCGG
AGCTGCGCGTGGCTGCAAGCCGCAACAGCGCGAATGATAACGCAGCAGCA
CCATCCTTACCATCTGACAATGCCGAAAAGAAGAAAAAGACTAAGAAAAA
GGATATATTCAATAGCGTGGAGGCCGTCGACAAGGTGTGGGTGGATGAGG
AGGAAAATCCCTTTGACAAGGACTGGGAGACGTTCCCCCCCTCCGAGCTC
GCGGACCACTGCGGTGTCTCGGATATTTTCTACTGGCAGCGTTACGATGA
AGAGATCTTGGCTGCTGCCGCCGCAGACGGGGCGGCGGTGGAGGTGAAGA
ACCCTTGGGCAAAGTTGGGACCGGAGAGGAAGTATGTGACGTTTGAGCCG
GACCATGGGGGGTGGAATAACATCCGAATGGCTATGGAGGTCGTCTTAGT
TTTCGCTTATGCTACTGGACGAACGTTGGTAATGCCACCGGAGCAAGGAA
TGTATCTATTGAACAAGGGCGATGCCCCCGACGACAATAAGTTACACTTT
TCTGACTTCTTTTACTTGAACCGGCTGCGGGAGAAGATGGAGATGATCGA
AATGAAGGACTTCTTGGAGGCAGAGGCCACGTCAGGCCATCTTGGACCGC
TTCCCCCTGGTAATCGCACGGACCTGGAAAGTGGCGAGCTATGGAGTTAT
TTGAATGGTCTGGGACAGGGGCCAGTGCGCTGGAACCCTTTCAAGGTGTG
TGTGGCTTTTACTGAGACTCCGGGCAAGGCCGTAGAGGAGCATTCGAAGG
AGCAGCAGGAGAGGTTGGACTTGTTTTGTGGGAAGCGAGAGCCAGTATTT
TATGATAAGGCGATGCAGGAGGCCAAGGTGATTCATTTCGGGTCGGGCGA
GGACATGCGTGTGTTGGCGCATTTTTACACTTTCGAGCACTTCATGGACC
CGGCTTTGGATAAGGCGGTGAAACGATTTGTCAGGTATGACTGTATGGAC
AGAGGGACAGAAGAAGAGGGTGATTATAAAGGTTTGTGGGATAGATGCTT
TGTATTGAATTGAATGGAACGTCCCCGGACTTGACAGCTGCACGCCCTCC
TCCTGTGTGTGCATTCTCTTTTTTTCCGTCCTCCCTCCCTCCAATAGGAC
ACCTTTCACACGACCCACACATAAACATATGTTGCCACTTTCTTTATGTG
TTCCCCTTTACCATACAGAAACTACATACATTACCGCGACGAGGTCTTTT
GCGCGGCCGGCCGGATCATTGCGGCAATGGAGACAGCTGCTGGCCCCGGG
GGATTCAAAGCCCTCCACATTCGCCGGGGAGACTTGCAATTTAAGGAGGT
CAAGATCCCTGCAGAAGAGATCATTGAGACCACCAAGGATATTTTGAATG
AGGGGGAGACGATTTACGTTGCCACGGACGAGAAGGACGCGGCTTATTTG
GATGTGCTAAGGGCGCGATTTAATGTGTATTTTTTGAATGATTTCCACGA
GAGGGTGGGTTTGGGGAAGCTAAATCAGAATTATATGGGCATGGTGGAGC
AGATTGTGTGCTCGCGGTCGCAGGTCTTCATTGGGACGTGGTTCTCGACG
TTCACGGGGTATATTACCCGGATGCGCGGGTACAATGGGTTTGATTATCG
CTCGAATTGGTATCATTATAGTCTGCGGAAAGACTCGTTTCAGACGGAGT
ACTACTCACGGGACCCCTGGTATGTCCGTGAATGGCCGGAAGGATGGGTG
GATATTGATTAA
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Coding sequence (CDS) from alignment at scaffold_2:405016..406827-

>mRNA_775 ID=mRNA_775|Name=jgi.p|Nanoce1779_2|522717|organism=Nannochloropsis oceanica|type=CDS|length=3156bp|location=Sequence derived from alignment at scaffold_2:405016..406827- (Nannochloropsis oceanica)
AAACTACATACATTACCGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCA
TTGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCAC
ATTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGA
GATCATTGAGACCACCAAGGATATTTTGAATGAGGGGGAGACGATTTACG
TTGCCACGGACGAGAAGGACGCGGCTTATTTGGATGTGCTAAGGGCGCGA
TTTAATGTGTATTTTTTGAATGATTTCCACGAGAGGGTGGGTTTGGGGAA
GCTAAATCAGAATTATATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGT
CGCAGGTCTTCATTGGGACGTGGTTCTCGACGTTCACGGGGTATATTACC
CGGATGCGCGGGTACAATGGGTTTGATTATCGCTCGAATTGGTATCATTA
TAGTCTGCGGAAAGACTCGTTTCAGACGGAGTACTACTCACGGGACCCCT
GGTATGTCCGTGAATGGCCGGAAGGATGGGTGGATATTGATTAAATGGTA
GCCTTTTCTCAAGGTCTATTGGAGCCGGTAGGGCAGCACAGCCCTTTGGC
GACCTTACGGGGTGCGACTAACTCAAAGAGCTTGGCCCCCGCGGAGCTGC
GCGTGGCTGCAAGCCGCAACAGCGCGAATGATAACGCAGCAGCACCATCC
TTACCATCTGACAATGCCGAAAAGAAGAAAAAGACTAAGAAAAAGGATAT
ATTCAATAGCGTGGAGGCCGTCGACAAGGTGTGGGTGGATGAGGAGGAAA
ATCCCTTTGACAAGGACTGGGAGACGTTCCCCCCCTCCGAGCTCGCGGAC
CACTGCGGTGTCTCGGATATTTTCTACTGGCAGCGTTACGATGAAGAGAT
CTTGGCTGCTGCCGCCGCAGACGGGGCGGCGGTGGAGGTGAAGAACCCTT
GGGCAAAGTTGGGACCGGAGAGGAAGTATGTGACGTTTGAGCCGGACCAT
GGGGGGTGGAATAACATCCGAATGGCTATGGAGGTCGTCTTAGTTTTCGC
TTATGCTACTGGACGAACGTTGGTAATGCCACCGGAGCAAGGAATGTATC
TATTGAACAAGGGCGATGCCCCCGACGACAATAAGTTACACTTTTCTGAC
TTCTTTTACTTGAACCGGCTGCGGGAGAAGATGGAGATGATCGAAATGAA
GGACTTCTTGGAGGCAGAGGCCACGTCAGGCCATCTTGGACCGCTTCCCC
CTGGTAATCGCACGGACCTGGAAAGTGGCGAGCTATGGAGTTATTTGAAT
GGTCTGGGACAGGGGCCAGTGCGCTGGAACCCTTTCAAGGTGTGTGTGGC
TTTTACTGAGACTCCGGGCAAGGCCGTAGAGGAGCATTCGAAGGAGCAGC
AGGAGAGGTTGGACTTGTTTTGTGGGAAGCGAGAGCCAGTATTTTATGAT
AAGGCGATGCAGGAGGCCAAGGTGATTCATTTCGGGTCGGGCGAGGACAT
GCGTGTGTTGGCGCATTTTTACACTTTCGAGCACTTCATGGACCCGGCTT
TGGATAAGGCGGTGAAACGATTTGTCAGAAACTACATACATTACCGCGAC
GAGGTCTTTTGCGCGGCCGGCCGGATCATTGCGGCAATGGAGACAGCTGC
TGGCCCCGGGGGATTCAAAGCCCTCCACATTCGCCGGGGAGACTTGCAAT
TTAAGGAGGTCAAGATCCCTGCAGAAGAGATCATTGAGACCACCAAGGAT
ATTTTGAATGAGGGGGAGACGATTTACGTTGCCACGGACGAGAAGGACGC
GGCTTATTTGGATGTGCTAAGGGCGCGATTTAATGTGTATTTTTTGAATG
ATTTCCACGAGAGGGTGGGTTTGGGGAAGCTAAATCAGAATTATATGGGC
ATGGTGGAGCAGATTGTGTGCTCGCGGTCGCAGGTCTTCATTGGGACGTG
GTTCTCGACGTTCACGGGGTATATTACCCGGATGCGCGGGTACAATGGGT
TTGATTATCGCTCGAATTGGTATCATTATAGTCTGCGGAAAGACTCGTTT
CAGACGGAGTACTACTCACGGGACCCCTGGTATGTCCGTGAATGGCCGGA
AGGATGGGTGGATATTGATTAAATGGTAGCCTTTTCTCAAGGTCTATTGG
AGCCGGTAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGTGCGACTAAC
TCAAAGAGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAGCCGCAACAG
CGCGAATGATAACGCAGCAGCACCATCCTTACCATCTGACAATGCCGAAA
AGAAGAAAAAGACTAAGAAAAAGGATATATTCAATAGCGTGGAGGCCGTC
GACAAGGTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAAGGACTGGGA
GACGTTCCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCTCGGATATTT
TCTACTGGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCCGCCGCAGAC
GGGGCGGCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGGACCGGAGAG
GAAGTATGTGACGTTTGAGCCGGACCATGGGGGGTGGAATAACATCCGAA
TGGCTATGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGACGAACGTTG
GTAATGCCACCGGAGCAAGGAATGTATCTATTGAACAAGGGCGATGCCCC
CGACGACAATAAGTTACACTTTTCTGACTTCTTTTACTTGAACCGGCTGC
GGGAGAAGATGGAGATGATCGAAATGAAGGACTTCTTGGAGGCAGAGGCC
ACGTCAGGCCATCTTGGACCGCTTCCCCCTGGTAATCGCACGGACCTGGA
AAGTGGCGAGCTATGGAGTTATTTGAATGGTCTGGGACAGGGGCCAGTGC
GCTGGAACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACTCCGGGCAAG
GCCGTAGAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGACTTGTTTTG
TGGGAAGCGAGAGCCAGTATTTTATGATAAGGCGATGCAGGAGGCCAAGG
TGATTCATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCGCATTTTTAC
ACTTTCGAGCACTTCATGGACCCGGCTTTGGATAAGGCGGTGAAACGATT
TGTCAG
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Synonyms
Publications