jgi.p|Nanoce1779_2|599889, mRNA_7749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599889
Unique NamemRNA_7749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1812
Alignment locationscaffold_21:233753..235687 -

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Properties
Property NameValue
TranscriptId599975
TrackFilteredModels2
ProteinId599889
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:233753..235687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599889gene_7749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599889mRNA_7749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7749CDS_7749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7749 ID=mRNA_7749|Name=jgi.p|Nanoce1779_2|599889|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
CGAGGGACATATTCGAGCTGCAAAGCACCTAAATCATCACTCTACCACCT
CATTCCTCCCATTGATCACGTCCACTATCTATCTTGACCCATTCTATCCA
TTTACAGACTACTCTTCCATATAACCAGGACAATGGCTGTGTGGAAGCAA
GTTTTATTCCTAGTGGCCTTCATTTCCACAGTCCAAGCCTTTCTCCCCGG
GCAAAAAAACAGGTACGCAGACGATCTTGTCCATGGAACAAAACGTGGAG
GAGTGTGACTACGTGAAGTTTGGGTGTGAGGTTGTGAGGGTGTATCCGCA
TGGCTACAACTTGGCCAAAGGCAGTACAGACCGAACGTTATATGATTGTT
TATCAGATAAATGTGGGGTTGCAAGGTTTAGTCGTGAGGTCGAAACCCGT
CCTCTGTGCGTGTCCCCCTTCATATCGCCCACCATAGCGCACGACGGAAG
ACGCTCGCCACTCTTGTACATCCGTAATTGCGTGTATAGCGGGACGCAAT
TCAAGTTGAGTGTGAGCGTGTGTTTTTTTTTCACTCTAAAAGGGTCGGGA
GGGAACAGGCTCAGGAGGGCTGACTTCGCATGCGCTGGCATGGTCACAAG
AGCATGGATGGACGTCAGGCATATTTAAGTAATTAACTTTCCGGGGGAAA
ATAGATACATAAGTGTCCACTCATCCTATAACTTTCCCTTTCCCCCACTT
CAAATAGATTGGTCGTCACCCGCTGCGGTGGCGGCAGCAGTAGCCGCAAC
ATTGTGCGACGAAGCTTGGCTATGGAGTACTTGGACGTGACTCTGCAAAA
ACCTATGGGCATTGTGCTGGAGGAGAATGATCCAAAACTCCGTGGAGTGT
ACGTCAAAAGTCTTAGCCAAGGAGGGGCGGCGGCGGCCAGCGGAAAGATT
CAGGCTGGCGACCACCTTGTCGCTGTGCAAGGCGAGGTTGTCACTGGCAA
GGACCTTGACATGGTCTTGGCGACGGTCGGGAACGCGCCGGCGGAAGGTG
TGCAGATGAAGTTTTATCGCGGATCGCTTGGGGACGTCATTAATCCTCAA
GTCTATTTCGATATTGATATTGGTGGCGATCGAGCGGGGAGGGTCACGTG
CCGGCTGCGCAAGGATGTAGTGCCCAAGACTGCTGAAAACTTCCGCGCCC
TCTGCACTGGCGAGAAAGGCTTTGGTTACAAGGGATCGGCCTTTCACCGC
GTCATTCCCGGGTTTATGTGCCAAGGTGGGGACTTCACCAGCGGCGACGG
CCGTGGAGGCAAGTCTATTTACGGCGATAAGTTCGAAGATGAGTCCTTCG
AGCTCACCCACGACGGTCCTGGTATCCTGTCGATGGCGAACGCGGGCCCG
AACACGAATGGGAGCCAGTTCTTTTTGTGCACCGTGGAGACGCCCTGGTT
GGACGGAAAGCACGTGGTGTTCGGACAGGTTACGGACGGTCTTGATGTGT
TACAGAAGATTGAGGCGGTGGGAAGCCAGGTGGGAAAAACAGCGGTGCCA
GTGGTGATAGCTGATTGTGGGCAATTGGCTTAGACGAACGGGTGACAGAC
AGTGCTTGTCTTCCCTCAGTTCCACTTCAAGAAAATTGGTGCCAGATGCA
GAGGGGAAGAAATTGCTACTCTTCCGGTCTACCACTTGTCAGATTGCGGT
GTCCAGTTTCCGTCAAATTTGCTCGCATTTATCTTGTTATGAGGCGGCTT
TTGTGAGTGTTCTTTCTCACAAGAGAGATCTGTTTTTACTTTTCACCCGT
CCCGATGGGTTGATTTTTTCTTTTAGACCAAAGAAATGAACATTAGTGTG
TTTCCCTGAAAT
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protein sequence of jgi.p|Nanoce1779_2|599889

>mRNA_7749-protein ID=mRNA_7749-protein|Name=jgi.p|Nanoce1779_2|599889|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MEYLDVTLQKPMGIVLEENDPKLRGVYVKSLSQGGAAAASGKIQAGDHLV
AVQGEVVTGKDLDMVLATVGNAPAEGVQMKFYRGSLGDVINPQVYFDIDI
GGDRAGRVTCRLRKDVVPKTAENFRALCTGEKGFGYKGSAFHRVIPGFMC
QGGDFTSGDGRGGKSIYGDKFEDESFELTHDGPGILSMANAGPNTNGSQF
FLCTVETPWLDGKHVVFGQVTDGLDVLQKIEAVGSQVGKTAVPVVIADCG
QLA*
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mRNA from alignment at scaffold_21:233753..235687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7749 ID=mRNA_7749|Name=jgi.p|Nanoce1779_2|599889|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at scaffold_21:233753..235687- (Nannochloropsis oceanica)
CGAGGGACATATTCGAGCTGCAAAGCACCTAAATCATCACTCTACCACCT
CATTCCTCCCATTGATCACGTCCACTATCTATCTTGACCCATTCTATCCA
TTTACAGACTACTCTTCCATATAACCAGGACAATGGCTGTGTGGAAGCAA
GTTTTATTCCTAGTGGCCTTCATTTCCACAGTCCAAGCCTTTCTCCCCGG
GCAAAAAAACAGGTACGCAGACGATCTTGTCCATGGAACAAAACGTGGAG
GAGTGTGACTACGTGAAGTTTGGGTGTGAGGTTGTGAGGGTGTATCCGCA
TGGCTACAACTTGGCCAAAGGCAGTACAGACCGAACGTTATATGATTGTT
TATCAGATAAATGTGGGGTTGCAAGGTTTAGTCGTGAGGTCGAAACCCGT
CCTCTGTGCGTGTCCCCCTTCATATCGCCCACCATAGCGCACGACGGAAG
ACGCTCGCCACTCTTGTACATCCGTAATTGCGTGTATAGCGGGACGCAAT
TCAAGTTGAGTGTGAGCGTGTGTTTTTTTTTCACTCTAAAAGGGTCGGGA
GGGAACAGGCTCAGGAGGGCTGACTTCGCATGCGCTGGCATGGTCACAAG
AGCATGGATGGACGTCAGGCATATTTAAGTAATTAACTTTCCGGGGGAAA
ATAGATACATAAGTGTCCACTCATCCTATAACTTTCCCTTTCCCCCACTT
CAAATAGATTGGTCGTCACCCGCTGCGGTGGCGGCAGCAGTAGCCGCAAC
ATTGTGCGACGAAGCTTGGCTATGGAGTACTTGGACGTGACTCTGCAAAA
ACCTATGGGCATTGTGCTGGAGGAGAATGATCCAAAACTCCGTGGAGTGT
ACGTCAAAAGTCTTAGCCAAGGAGGGGCGGCGGCGGCCAGCGGAAAGATT
CAGGCTGGCGACCACCTTGTCGCTGTGCAAGGCGAGGTTGTCACTGGCAA
GGACCTTGACATGGTCTTGGCGACGGTCGGGAACGCGCCGGCGGAAGGTG
TGCAGATGAAGTTTTATCGCGGATCGCTTGGGGACGTCATTAATCCTCAA
GTCTATTTCGATATTGATATTGGTGGCGATCGAGCGGGGAGGGTCACGTG
CCGGCTGCGCAAGGATGTAGTGCCCAAGACTGCTGGTATGTTGTTCGATT
CCATTGAATATTATGTTATGTATAGAGACAGATACATATATATGAACAAG
AATTGTTTGCCTTCGTGCCATTCCAAATCTGACTTAATATCTCCGTAACC
AAATTCAGAAAACTTCCGCGCCCTCTGCACTGGCGAGAAAGGCTTTGGTT
ACAAGGGATCGGCCTTTCACCGCGTCATTCCCGGGTTTATGTGCCAAGGT
GGGGACTTCACCAGCGGCGACGGCCGTGGAGGCAAGTCTATTTACGGCGA
TAAGTTCGAAGATGAGTCCTTCGAGCTCACCCACGACGGTCCTGGTATCC
TGTCGATGGCGAACGCGGGCCCGAACACGAATGGGAGCCAGTTCTTTTTG
TGCACCGTGGAGACGCCCTGGTTGGACGGAAAGCACGTGGTGTTCGGACA
GGTTACGGACGGTCTTGATGTGTTACAGAAGATTGAGGCGGTGGGAAGCC
AGGTGGGAAAAACAGCGGTGCCAGTGGTGATAGCTGATTGTGGGCAATTG
GCTTAGACGAACGGGTGACAGACAGTGCTTGTCTTCCCTCAGTTCCACTT
CAAGAAAATTGGTGCCAGATGCAGAGGGGAAGAAATTGCTACTCTTCCGG
TCTACCACTTGTCAGATTGCGGTGTCCAGTTTCCGTCAAATTTGCTCGCA
TTTATCTTGTTATGAGGCGGCTTTTGTGAGTGTTCTTTCTCACAAGAGAG
ATCTGTTTTTACTTTTCACCCGTCCCGATGGGTTGATTTTTTCTTTTAGA
CCAAAGAAATGAACATTAGTGTGTTTCCCTGAAAT
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Coding sequence (CDS) from alignment at scaffold_21:233753..235687-

>mRNA_7749 ID=mRNA_7749|Name=jgi.p|Nanoce1779_2|599889|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_21:233753..235687- (Nannochloropsis oceanica)
AAAACTTCCGCGCCCTCTGCACTGGCGAGAAAGGCTTTGGTTACAAGGGA
TCGGCCTTTCACCGCGTCATTCCCGGGTTTATGTGCCAAGGTGGGGACTT
CACCAGCGGCGACGGCCGTGGAGGCAAGTCTATTTACGGCGATAAGTTCG
AAGATGAGTCCTTCGAGCTCACCCACGACGGTCCTGGTATCCTGTCGATG
GCGAACGCGGGCCCGAACACGAATGGGAGCCAGTTCTTTTTGTGCACCGT
GGAGACGCCCTGGTTGGACGGAAAGCACGTGGTGTTCGGACAGGTTACGG
ACGGTCTTGATGTGTTACAGAAGATTGAGGCGGTGGGAAGCCAGGTGGGA
AAAACAGCGGTGCCAGTGGTGATAGCTGATTGTGGGCAATTGGCTTAGAT
GGAGTACTTGGACGTGACTCTGCAAAAACCTATGGGCATTGTGCTGGAGG
AGAATGATCCAAAACTCCGTGGAGTGTACGTCAAAAGTCTTAGCCAAGGA
GGGGCGGCGGCGGCCAGCGGAAAGATTCAGGCTGGCGACCACCTTGTCGC
TGTGCAAGGCGAGGTTGTCACTGGCAAGGACCTTGACATGGTCTTGGCGA
CGGTCGGGAACGCGCCGGCGGAAGGTGTGCAGATGAAGTTTTATCGCGGA
TCGCTTGGGGACGTCATTAATCCTCAAGTCTATTTCGATATTGATATTGG
TGGCGATCGAGCGGGGAGGGTCACGTGCCGGCTGCGCAAGGATGTAGTGC
CCAAGACTGCTGAAAACTTCCGCGCCCTCTGCACTGGCGAGAAAGGCTTT
GGTTACAAGGGATCGGCCTTTCACCGCGTCATTCCCGGGTTTATGTGCCA
AGGTGGGGACTTCACCAGCGGCGACGGCCGTGGAGGCAAGTCTATTTACG
GCGATAAGTTCGAAGATGAGTCCTTCGAGCTCACCCACGACGGTCCTGGT
ATCCTGTCGATGGCGAACGCGGGCCCGAACACGAATGGGAGCCAGTTCTT
TTTGTGCACCGTGGAGACGCCCTGGTTGGACGGAAAGCACGTGGTGTTCG
GACAGGTTACGGACGGTCTTGATGTGTTACAGAAGATTGAGGCGGTGGGA
AGCCAGGTGGGAAAAACAGCGGTGCCAGTGGTGATAGCTGATTGTGGGCA
ATTGGCTTAGATGGAGTACTTGGACGTGACTCTGCAAAAACCTATGGGCA
TTGTGCTGGAGGAGAATGATCCAAAACTCCGTGGAGTGTACGTCAAAAGT
CTTAGCCAAGGAGGGGCGGCGGCGGCCAGCGGAAAGATTCAGGCTGGCGA
CCACCTTGTCGCTGTGCAAGGCGAGGTTGTCACTGGCAAGGACCTTGACA
TGGTCTTGGCGACGGTCGGGAACGCGCCGGCGGAAGGTGTGCAGATGAAG
TTTTATCGCGGATCGCTTGGGGACGTCATTAATCCTCAAGTCTATTTCGA
TATTGATATTGGTGGCGATCGAGCGGGGAGGGTCACGTGCCGGCTGCGCA
AGGATGTAGTGCCCAAGACTGCTG
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Synonyms
Publications