jgi.p|Nanoce1779_2|599882, mRNA_7748 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599882
Unique NamemRNA_7748
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_21:232495..233752 +

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Properties
Property NameValue
TranscriptId599968
TrackFilteredModels2
ProteinId599882
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:232495..233752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599882gene_7748Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599882mRNA_7748-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7748CDS_7748Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7748 ID=mRNA_7748|Name=jgi.p|Nanoce1779_2|599882|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
AGGATCCGCCCACTACTCCATTCATTATAAGGATCCGCCCGCCGCACACG
CAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAAATCATGGCGGATG
GCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCTGAACCAGCAC
TGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGATGATGAAGAT
GGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAGGGGAATGCCA
AGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTTGGGCAGCGTC
AAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCGCCAGCTTTGA
CAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAACGGGAAGCGG
CACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAACAAGAGCAGG
AAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGCATCCCAAGTT
GCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGACATGCAAGCTA
TTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCAGGGATCTGGG
GAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGGCTGGTGCTTC
GAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGGACGAAGGAAA
AGAGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTGTATTAATAGT
TGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGGAAACAACCAA
GAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACTGACAGCAAGG
AAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAGAAGAGAGGAG
AAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAGGTAAGAAGAA
AAGCAAAAGAAAGAAGGATTGTGAGTGAATGAAGAAAAATGCCAGTCACT
GACCAACAAATATCTGAGAACCCAGGGAAACCTAAGGGAAATTGAGATGT
TGTGAACGAAATAAAGGAATGAAAAAAAATTATTATATTAATCTACGAAG
TGACGTGATGTGCA
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protein sequence of jgi.p|Nanoce1779_2|599882

>mRNA_7748-protein ID=mRNA_7748-protein|Name=jgi.p|Nanoce1779_2|599882|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MADGILQALVGPTQDTLNQHWAQGKAKSFGFQMMMKMGWSDGRGLGRELQ
GNAKHLTVSKKVDNAGLGSVKDETGNAGWTEASASFDSVLSKLNAHYGGQ
REAAQKKWEQKEKKRGNKSRKKEGGGTASGLLRHPKLLQSKNIRKYSAHD
MQAILGIRCVDATPSSQGSGEGRGEAPSLWSALAGASSGACKKSDDMGSR
TKEKRNKKKRERRNSICINSCSGGEAKEDGKKEETTKKSKKEMVRQDEDT
DSKEGRAEQKQATKRKRREEKAKTSEAKVLSTGGKKKSKRKKDCE*
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mRNA from alignment at scaffold_21:232495..233752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7748 ID=mRNA_7748|Name=jgi.p|Nanoce1779_2|599882|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at scaffold_21:232495..233752+ (Nannochloropsis oceanica)
AGGATCCGCCCACTACTCCATTCATTATAAGGATCCGCCCGCCGCACACG
CAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAAATCATGGCGGATG
GCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCTGAACCAGCAC
TGGGCCCAAGGTAAATGGATAAATTGATTAAGAGACTGGATGTGGAGGCA
TAATAATAATGTACTATGGTCTCTGTCGGGAAGGCTGCCTTAGCCATCAG
CATACCCCGCTGACCCTCTCCTCATCCCCACCACCCATCGCCCAATCAAA
CCAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGATGATGAAGATGGGTTG
GAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAGGGGAATGCCAAGCACT
TGACCGTGAGCAAGAAAGTGGACAACGCTGGCTTGGGCAGCGTCAAAGAC
GAAACAGGGAACGCAGGCTGGACAGAGGCCTCCGCCAGCTTTGACAGCGT
TCTCAGCAAACTGAATGCCCACTACGGGGGGCAACGGGAAGCGGCACAAA
AGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAACAAGAGCAGGAAGAAG
GAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGCATCCCAAGTTGCTGCA
GAGTAAGAACATCCGGAAATACAGCGCGCATGACATGCAAGCTATTCTTG
GGATTAGATGTGTAGATGCGACACCATCGAGCCAGGGATCTGGGGAGGGC
AGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGGCTGGTGCTTCGAGTGG
AGCTTGTAAAAAAAGTGATGATATGGGCAGTAGGACGAAGGAAAAGAGGA
ATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTGTATTAATAGTTGTAGT
GGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGGAAACAACCAAGAAGAG
TAAAAAAGAAATGGTGCGGCAAGACGAGGATACTGACAGCAAGGAAGGGC
GAGCGGAGCAGAAACAAGCCACAAAACGAAAGAGAAGAGAGGAGAAGGCA
AAGACATCGGAGGCGAAAGTTTTATCTACTGGAGGTAAGAAGAAAAGCAA
AAGAAAGAAGGATTGTGAGTGAATGAAGAAAAATGCCAGTCACTGACCAA
CAAATATCTGAGAACCCAGGGAAACCTAAGGGAAATTGAGATGTTGTGAA
CGAAATAAAGGAATGAAAAAAAATTATTATATTAATCTACGAAGTGACGT
GATGTGCA
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Coding sequence (CDS) from alignment at scaffold_21:232495..233752+

>mRNA_7748 ID=mRNA_7748|Name=jgi.p|Nanoce1779_2|599882|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_21:232495..233752+ (Nannochloropsis oceanica)
ATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCT
GAACCAGCACTGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGA
TGATGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAG
GGGAATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTT
GGGCAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCG
CCAGCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAA
CGGGAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAA
CAAGAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGC
ATCCCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGAC
ATGCAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCA
GGGATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGG
CTGGTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGG
ACGAAGGAAAAGAGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTG
TATTAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGG
AAACAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACT
GACAGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAG
AAGAGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAG
GTAAGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGAATGGCGGATGGC
ATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCTGAACCAGCACTG
GGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGATGATGAAGATGG
GTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAGGGGAATGCCAAG
CACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTTGGGCAGCGTCAA
AGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCGCCAGCTTTGACA
GCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAACGGGAAGCGGCA
CAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAACAAGAGCAGGAA
GAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGCATCCCAAGTTGC
TGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGACATGCAAGCTATT
CTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCAGGGATCTGGGGA
GGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGGCTGGTGCTTCGA
GTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGGACGAAGGAAAAG
AGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTGTATTAATAGTTG
TAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGGAAACAACCAAGA
AGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACTGACAGCAAGGAA
GGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAGAAGAGAGGAGAA
GGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAGGTAAGAAGAAAA
GCAAAAGAAAGAAGGATTGTGAGTGA
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Synonyms
Publications