jgi.p|Nanoce1779_2|599871, mRNA_7745 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599871
Unique Name	mRNA_7745
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1831
Alignment location	scaffold_21:226560..228390 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599957
Track	FilteredModels2
ProteinId	599871

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:226560..228390 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599871	gene_7745	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599871	mRNA_7745-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7745	CDS_7745	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:226560..228390-
coding sequence from alignment at scaffold_21:226560..228390-

mRNA sequence

>mRNA_7745 ID=mRNA_7745|Name=jgi.p|Nanoce1779_2|599871|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
GGGTTTTTGAGGGGCGAGGGGCTGGAGGGGGAAGGGTCGGGTTGCATTCG
TTTTCATTTGTCGGATTTGAGCGGGGAGGGGCCAAGTAAGATGGTGAGGC
CGTTGCCGAGCTTGAATCAGGTGCAGCGATGGGGGAGGCAAAATTCGATT
GCGGGGTCGTATTTATTTGCTGTGGATGATCAGACTCCGTACCGGGAGGA
GGTATTGTACTTTGAGTTGATGCCGTTTACGATTGCGGAGATGGATCGGT
ATTTAGTGAGGGATGTAGTGTTGCATGACGCTAGGTTGCGGAAGAGGGCA
GGAAGGAGACTGCAGCAGGTAAGAGCGGGGGAGGAAGGGGTAGAGGTCGA
GGCGGTGGGAGTAAGGATGAATGGGAATGGAGGAAGCGGGGCTGAAGGAG
CAGGAGAAGGAAGAGGGATAAGTCGTGGCTTTTGTCGGGCCCAGGGAAAG
AGCTTCAAGGCGGTTTGGACCGAGTTTTTGCCGCCGGCAAAGGCTAAGCG
GCCCGCTTACACGAAGCAAAAAGATGAAAAGGACGAGGGCGAGGGACGAG
GGGAGAAAGAGAAGAGAAAATCGACGGAAGAGCCTACGGCGGAAATTGCG
GGGGATGAGGAGGAAGAGCTGCCGCTGGTGCTGTCGGTGCTAGTGCCGAG
AGAGGGCACAGCGGGCGACCTGCTCGTGGCGATGGAGGAGGCTTTAGGGT
TAGGGTCGGGAGGCAAAGAAGGGCAGAGGGAAGCGGAGGGGGAGGACCTC
AATTTGGAGCTGGAGCTGTTGGACACGAATCATTGCAAGGTTCGGAAAGT
TTATGAAGAGGACAGTCCTGTGCGGGATTTGCCTGAAACCCCACTGACGG
CCCGAGGGGGGATCATTGGATCAGGGACTCTTTTGAAAGCAGTCGTGCAT
GCCCTAGACCGCCAAGAACGACATCTGACCCAACTCCTTCGCTCTCAGAA
GGAAGGAGGTGCGAAAGCGGAAGCAGTTGAGAGCGAGGTCAAGCCCGACT
CCACCCCTTCCGTCTCTTCCTCCTCCTTTGAGACCCTCCTCCCCCTCCAA
ATTAACTTCCTCAACATGGGAGCAGACCAGCCCCGACCTCTCCACAACGC
CCCCACCACTCTACTCGGCACCATCCACCCTGTCGGTCTACCACTCCTAA
CCGCCCTTTTTGGCACTGATTCCTGGGAGGACTTCCTTGCTCGTCTTGCA
GGCAAGGTGGGTCGTCCTGTAGAAACTTTGAAAAATTGGACGCCTGTTTT
GGAGCTCGGCAAAAAACTCTATCACTTGCCTATGCAGGTGCAGGAGGAGG
GGGAGAAAGGGAAAGGGTCGTTTTTGAGGGCACTTGTCAGTACTTACGGC
GAGGGGGTGAAGGATTTTGTGGGGAAGAGCACGCGGTGTAGTGGGTTGGA
GAAGCTGCCGACTTTGACGTTTCTGGCGGCGGAGCCCGTAGGCGTGCGTC
CAGACCAGCTCATGGGGGGGATCCACAGGCGGTCGCGGCGGGCGGAGCAG
GGGATTAGGATTCGACAGGGTTAGTTAGATGAATTAATGAAAGGAAAACG
AAAACTGCCAGATTAGGTCATAAGGGAAAGTAAAGAGTGACATAAATTAG
CTAAGAAAACATTTTAGGAAGAGAGGACAGAAGAGGAGGAAGTGGTAGTG
TGAGGGCGACAGTCGCCAGCCAAACAGAGTGGATAGGTGTACATCACCTC
GTGTCCCAGTGTCGTCCATATTAATGTAGACACACACCCCATCCACCACA
AAGCAGGCATTTACTGCAGGAACAAAATGAACAAATACGTATGGGAGAAA
AAATGGAAGAAAATAGTGAGACCATGTGATA

protein sequence of jgi.p|Nanoce1779_2|599871

>mRNA_7745-protein ID=mRNA_7745-protein|Name=jgi.p|Nanoce1779_2|599871|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MVRPLPSLNQVQRWGRQNSIAGSYLFAVDDQTPYREEVLYFELMPFTIAE
MDRYLVRDVVLHDARLRKRAGRRLQQVRAGEEGVEVEAVGVRMNGNGGSG
AEGAGEGRGISRGFCRAQGKSFKAVWTEFLPPAKAKRPAYTKQKDEKDEG
EGRGEKEKRKSTEEPTAEIAGDEEEELPLVLSVLVPREGTAGDLLVAMEE
ALGLGSGGKEGQREAEGEDLNLELELLDTNHCKVRKVYEEDSPVRDLPET
PLTARGGIIGSGTLLKAVVHALDRQERHLTQLLRSQKEGGAKAEAVESEV
KPDSTPSVSSSSFETLLPLQINFLNMGADQPRPLHNAPTTLLGTIHPVGL
PLLTALFGTDSWEDFLARLAGKVGRPVETLKNWTPVLELGKKLYHLPMQV
QEEGEKGKGSFLRALVSTYGEGVKDFVGKSTRCSGLEKLPTLTFLAAEPV
GVRPDQLMGGIHRRSRRAEQGIRIRQG*

mRNA from alignment at scaffold_21:226560..228390-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7745 ID=mRNA_7745|Name=jgi.p|Nanoce1779_2|599871|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at scaffold_21:226560..228390- (Nannochloropsis oceanica)
GGGTTTTTGAGGGGCGAGGGGCTGGAGGGGGAAGGGTCGGGTTGCATTCG
TTTTCATTTGTCGGATTTGAGCGGGGAGGGGCCAAGTAAGATGGTGAGGC
CGTTGCCGAGCTTGAATCAGGTGCAGCGATGGGGGAGGCAAAATTCGATT
GCGGGGTCGTATTTATTTGCTGTGGATGATCAGACTCCGTACCGGGAGGA
GGTATTGTACTTTGAGTTGATGCCGTTTACGATTGCGGAGATGGATCGGT
ATTTAGTGAGGGATGTAGTGTTGCATGACGCTAGGTTGCGGAAGAGGGCA
GGAAGGAGACTGCAGCAGGTAAGAGCGGGGGAGGAAGGGGTAGAGGTCGA
GGCGGTGGGAGTAAGGATGAATGGGAATGGAGGAAGCGGGGCTGAAGGAG
CAGGAGAAGGAAGAGGGATAAGTCGTGGCTTTTGTCGGGCCCAGGGAAAG
AGCTTCAAGGCGGTTTGGACCGAGTTTTTGCCGCCGGCAAAGGCTAAGCG
GCCCGCTTACACGAAGCAAAAAGATGAAAAGGACGAGGGCGAGGGACGAG
GGGAGAAAGAGAAGAGAAAATCGACGGAAGAGCCTACGGCGGAAATTGCG
GGGGATGAGGAGGAAGAGCTGCCGCTGGTGCTGTCGGTGCTAGTGCCGAG
AGAGGGCACAGCGGGCGACCTGCTCGTGGCGATGGAGGAGGCTTTAGGGT
TAGGGTCGGGAGGCAAAGAAGGGCAGAGGGAAGCGGAGGGGGAGGACCTC
AATTTGGAGCTGGAGCTGTTGGACACGAATCATTGCAAGGTTCGGAAAGT
TTATGAAGAGGACAGTCCTGTGCGGGATTTGCCTGAAACCCCACTGACGG
CCCGAGGGGGGATCATTGGATCAGGGACTCTTTTGAAAGCAGTCGTGCAT
GCCCTAGACCGCCAAGAACGACATCTGACCCAACTCCTTCGCTCTCAGAA
GGAAGGAGGTGCGAAAGCGGAAGCAGTTGAGAGCGAGGTCAAGCCCGACT
CCACCCCTTCCGTCTCTTCCTCCTCCTTTGAGACCCTCCTCCCCCTCCAA
ATTAACTTCCTCAACATGGGAGCAGACCAGCCCCGACCTCTCCACAACGC
CCCCACCACTCTACTCGGCACCATCCACCCTGTCGGTCTACCACTCCTAA
CCGCCCTTTTTGGCACTGATTCCTGGGAGGACTTCCTTGCTCGTCTTGCA
GGCAAGGTGGGTCGTCCTGTAGAAACTTTGAAAAATTGGACGCCTGTTTT
GGAGCTCGGCAAAAAACTCTATCACTTGCCTATGCAGGTGCAGGAGGAGG
GGGAGAAAGGGAAAGGGTCGTTTTTGAGGGCACTTGTCAGTACTTACGGC
GAGGGGGTGAAGGATTTTGTGGGGAAGAGCACGCGGTGTAGTGGGTTGGA
GAAGCTGCCGACTTTGACGTTTCTGGCGGCGGAGCCCGTAGGCGTGCGTC
CAGACCAGCTCATGGGGGGGATCCACAGGCGGTCGCGGCGGGCGGAGCAG
GGGATTAGGATTCGACAGGGTTAGTTAGATGAATTAATGAAAGGAAAACG
AAAACTGCCAGATTAGGTCATAAGGGAAAGTAAAGAGTGACATAAATTAG
CTAAGAAAACATTTTAGGAAGAGAGGACAGAAGAGGAGGAAGTGGTAGTG
TGAGGGCGACAGTCGCCAGCCAAACAGAGTGGATAGGTGTACATCACCTC
GTGTCCCAGTGTCGTCCATATTAATGTAGACACACACCCCATCCACCACA
AAGCAGGCATTTACTGCAGGAACAAAATGAACAAATACGTATGGGAGAAA
AAATGGAAGAAAATAGTGAGACCATGTGATA

Coding sequence (CDS) from alignment at scaffold_21:226560..228390-

>mRNA_7745 ID=mRNA_7745|Name=jgi.p|Nanoce1779_2|599871|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_21:226560..228390- (Nannochloropsis oceanica)
ATGGTGAGGCCGTTGCCGAGCTTGAATCAGGTGCAGCGATGGGGGAGGCA
AAATTCGATTGCGGGGTCGTATTTATTTGCTGTGGATGATCAGACTCCGT
ACCGGGAGGAGGTATTGTACTTTGAGTTGATGCCGTTTACGATTGCGGAG
ATGGATCGGTATTTAGTGAGGGATGTAGTGTTGCATGACGCTAGGTTGCG
GAAGAGGGCAGGAAGGAGACTGCAGCAGGTAAGAGCGGGGGAGGAAGGGG
TAGAGGTCGAGGCGGTGGGAGTAAGGATGAATGGGAATGGAGGAAGCGGG
GCTGAAGGAGCAGGAGAAGGAAGAGGGATAAGTCGTGGCTTTTGTCGGGC
CCAGGGAAAGAGCTTCAAGGCGGTTTGGACCGAGTTTTTGCCGCCGGCAA
AGGCTAAGCGGCCCGCTTACACGAAGCAAAAAGATGAAAAGGACGAGGGC
GAGGGACGAGGGGAGAAAGAGAAGAGAAAATCGACGGAAGAGCCTACGGC
GGAAATTGCGGGGGATGAGGAGGAAGAGCTGCCGCTGGTGCTGTCGGTGC
TAGTGCCGAGAGAGGGCACAGCGGGCGACCTGCTCGTGGCGATGGAGGAG
GCTTTAGGGTTAGGGTCGGGAGGCAAAGAAGGGCAGAGGGAAGCGGAGGG
GGAGGACCTCAATTTGGAGCTGGAGCTGTTGGACACGAATCATTGCAAGG
TTCGGAAAGTTTATGAAGAGGACAGTCCTGTGCGGGATTTGCCTGAAACC
CCACTGACGGCCCGAGGGGGGATCATTGGATCAGGGACTCTTTTGAAAGC
AGTCGTGCATGCCCTAGACCGCCAAGAACGACATCTGACCCAACTCCTTC
GCTCTCAGAAGGAAGGAGGTGCGAAAGCGGAAGCAGTTGAGAGCGAGGTC
AAGCCCGACTCCACCCCTTCCGTCTCTTCCTCCTCCTTTGAGACCCTCCT
CCCCCTCCAAATTAACTTCCTCAACATGGGAGCAGACCAGCCCCGACCTC
TCCACAACGCCCCCACCACTCTACTCGGCACCATCCACCCTGTCGGTCTA
CCACTCCTAACCGCCCTTTTTGGCACTGATTCCTGGGAGGACTTCCTTGC
TCGTCTTGCAGGCAAGGTGGGTCGTCCTGTAGAAACTTTGAAAAATTGGA
CGCCTGTTTTGGAGCTCGGCAAAAAACTCTATCACTTGCCTATGCAGGTG
CAGGAGGAGGGGGAGAAAGGGAAAGGGTCGTTTTTGAGGGCACTTGTCAG
TACTTACGGCGAGGGGGTGAAGGATTTTGTGGGGAAGAGCACGCGGTGTA
GTGGGTTGGAGAAGCTGCCGACTTTGACGTTTCTGGCGGCGGAGCCCGTA
GGCGTGCGTCCAGACCAGCTCATGGGGGGGATCCACAGGCGGTCGCGGCG
GGCGGAGCAGGGGATTAGGATTCGACAGGGTTAG

Synonyms

Publications