jgi.p|Nanoce1779_2|599870, mRNA_7744 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599870
Unique NamemRNA_7744
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_21:225321..226519 +

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Properties
Property NameValue
TranscriptId599956
TrackFilteredModels2
ProteinId599870
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:225321..226519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599870gene_7744Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599870mRNA_7744-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7744CDS_7744Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7744 ID=mRNA_7744|Name=jgi.p|Nanoce1779_2|599870|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
AACCACAGACTAGCAAGACATGGCGATGGAGGGCGAGCTGACACCGGCGG
CCTTGACGGAGGACCCTCGTTCATGGGTCGGTCAACATTTTCTATCCGTC
ACGCAGCTTTCCTTGCCCGCTTTGGAACTATTCTTGCGGGAGGCTGAAGC
CATGAAGGCGCTTGTGGCCGCCCGGGGCGGGGACCGAAGGATGCAAGGGC
GCATCCTCGGCAGTATTTTTTTCGAACCGTCGACGCGAACCACGTCATCC
TTTCAAGCGGCCTTCCAGCGTTTGGGGGGCAGTTGCTTGCATGTGAACGA
GTCATCCTCGAGCGCGCAGAAGGGCGAGACACTGAGCGACACTGTCCGGT
CCATGGCCTGCTACTGCGACCTGGTGGTGGTGCGCCATCCAGTTAAGGGA
AGCGTGCGCTCGGCGGCAGGCACCTGTCCCAAACCTCTGTTGAACGCGGG
GGACGGGACGGGTGAGCACCCCACGCAGTCTCTTCTGGACCTGCTGACTG
TGAAGCTGGAGCTTGGAGAAATCACGGGCAAGACTGTGGCGCTGGTAGGG
GACCTAAAGCATGGACGCACGGCACATTCCTTGGCACGATTGCTCTGCTT
ATTCAGTGGTGTCGAGATAATATATGTGAGCCCTGAGTCGTTGAGAATGC
CGGAGGAAGTGAAGGAGTACGTGGGCAGCCGCGGCGTGGCCCAGCGTGAG
GCTTTTACGCTGGATGCCGAGGTGTTGGCGGAGACGGATGTGCTTTACAT
GACGCGCGTGCAGAAGGAGCGGTTTGCAACGAGTGCTGATTATGATGAGG
TGAAGGACATGTTTAGGATTACCCCACAAGTGATGAAGCAGGGCAAGAGC
ACGTTGGTGCTGATGCATCCTTTACCACGCGTGGGTGAGATCGACGAGGA
GGTAGATCGCGACCCGCGCGCAGCTTACTTCAGGCAGATGGAGAATGGGA
TGTATGCGCGTATGGCATTGGTGGCATTGATTGTGGGGGTGCCCACGTTT
CCGGCAGATTCTTCTTAAAGTGAAGGAGTGAAAAGAAAACTGAAGAGAAG
GAATTGAAAAGAGATATAGGTGTGCTCACCAAGCGCTAGCCACTAAGTCG
AGTAGCCAGGTGGATAATGGCGTTGTATCGATTCACTTAATCATTGAGGA
GTAGAACAAGTACAGGAAGGGAAAAGAAAATAACTGCGTGCGCAATAAA
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protein sequence of jgi.p|Nanoce1779_2|599870

>mRNA_7744-protein ID=mRNA_7744-protein|Name=jgi.p|Nanoce1779_2|599870|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MAMEGELTPAALTEDPRSWVGQHFLSVTQLSLPALELFLREAEAMKALVA
ARGGDRRMQGRILGSIFFEPSTRTTSSFQAAFQRLGGSCLHVNESSSSAQ
KGETLSDTVRSMACYCDLVVVRHPVKGSVRSAAGTCPKPLLNAGDGTGEH
PTQSLLDLLTVKLELGEITGKTVALVGDLKHGRTAHSLARLLCLFSGVEI
IYVSPESLRMPEEVKEYVGSRGVAQREAFTLDAEVLAETDVLYMTRVQKE
RFATSADYDEVKDMFRITPQVMKQGKSTLVLMHPLPRVGEIDEEVDRDPR
AAYFRQMENGMYARMALVALIVGVPTFPADSS*
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mRNA from alignment at scaffold_21:225321..226519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7744 ID=mRNA_7744|Name=jgi.p|Nanoce1779_2|599870|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp|location=Sequence derived from alignment at scaffold_21:225321..226519+ (Nannochloropsis oceanica)
AACCACAGACTAGCAAGACATGGCGATGGAGGGCGAGCTGACACCGGCGG
CCTTGACGGAGGACCCTCGTTCATGGGTCGGTCAACATTTTCTATCCGTC
ACGCAGCTTTCCTTGCCCGCTTTGGAACTATTCTTGCGGGAGGCTGAAGC
CATGAAGGCGCTTGTGGCCGCCCGGGGCGGGGACCGAAGGATGCAAGGGC
GCATCCTCGGCAGTATTTTTTTCGAACCGTCGACGCGAACCACGTCATCC
TTTCAAGCGGCCTTCCAGCGTTTGGGGGGCAGTTGCTTGCATGTGAACGA
GTCATCCTCGAGCGCGCAGAAGGGCGAGACACTGAGCGACACTGTCCGGT
CCATGGCCTGCTACTGCGACCTGGTGGTGGTGCGCCATCCAGTTAAGGGA
AGCGTGCGCTCGGCGGCAGGCACCTGTCCCAAACCTCTGTTGAACGCGGG
GGACGGGACGGGTGAGCACCCCACGCAGTCTCTTCTGGACCTGCTGACTG
TGAAGCTGGAGCTTGGAGAAATCACGGGCAAGACTGTGGCGCTGGTAGGG
GACCTAAAGCATGGACGCACGGCACATTCCTTGGCACGATTGCTCTGCTT
ATTCAGTGGTGTCGAGATAATATATGTGAGCCCTGAGTCGTTGAGAATGC
CGGAGGAAGTGAAGGAGTACGTGGGCAGCCGCGGCGTGGCCCAGCGTGAG
GCTTTTACGCTGGATGCCGAGGTGTTGGCGGAGACGGATGTGCTTTACAT
GACGCGCGTGCAGAAGGAGCGGTTTGCAACGAGTGCTGATTATGATGAGG
TGAAGGACATGTTTAGGATTACCCCACAAGTGATGAAGCAGGGCAAGAGC
ACGTTGGTGCTGATGCATCCTTTACCACGCGTGGGTGAGATCGACGAGGA
GGTAGATCGCGACCCGCGCGCAGCTTACTTCAGGCAGATGGAGAATGGGA
TGTATGCGCGTATGGCATTGGTGGCATTGATTGTGGGGGTGCCCACGTTT
CCGGCAGATTCTTCTTAAAGTGAAGGAGTGAAAAGAAAACTGAAGAGAAG
GAATTGAAAAGAGATATAGGTGTGCTCACCAAGCGCTAGCCACTAAGTCG
AGTAGCCAGGTGGATAATGGCGTTGTATCGATTCACTTAATCATTGAGGA
GTAGAACAAGTACAGGAAGGGAAAAGAAAATAACTGCGTGCGCAATAAA
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Coding sequence (CDS) from alignment at scaffold_21:225321..226519+

>mRNA_7744 ID=mRNA_7744|Name=jgi.p|Nanoce1779_2|599870|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_21:225321..226519+ (Nannochloropsis oceanica)
ATGGCGATGGAGGGCGAGCTGACACCGGCGGCCTTGACGGAGGACCCTCG
TTCATGGGTCGGTCAACATTTTCTATCCGTCACGCAGCTTTCCTTGCCCG
CTTTGGAACTATTCTTGCGGGAGGCTGAAGCCATGAAGGCGCTTGTGGCC
GCCCGGGGCGGGGACCGAAGGATGCAAGGGCGCATCCTCGGCAGTATTTT
TTTCGAACCGTCGACGCGAACCACGTCATCCTTTCAAGCGGCCTTCCAGC
GTTTGGGGGGCAGTTGCTTGCATGTGAACGAGTCATCCTCGAGCGCGCAG
AAGGGCGAGACACTGAGCGACACTGTCCGGTCCATGGCCTGCTACTGCGA
CCTGGTGGTGGTGCGCCATCCAGTTAAGGGAAGCGTGCGCTCGGCGGCAG
GCACCTGTCCCAAACCTCTGTTGAACGCGGGGGACGGGACGGGTGAGCAC
CCCACGCAGTCTCTTCTGGACCTGCTGACTGTGAAGCTGGAGCTTGGAGA
AATCACGGGCAAGACTGTGGCGCTGGTAGGGGACCTAAAGCATGGACGCA
CGGCACATTCCTTGGCACGATTGCTCTGCTTATTCAGTGGTGTCGAGATA
ATATATGTGAGCCCTGAGTCGTTGAGAATGCCGGAGGAAGTGAAGGAGTA
CGTGGGCAGCCGCGGCGTGGCCCAGCGTGAGGCTTTTACGCTGGATGCCG
AGGTGTTGGCGGAGACGGATGTGCTTTACATGACGCGCGTGCAGAAGGAG
CGGTTTGCAACGAGTGCTGATTATGATGAGGTGAAGGACATGTTTAGGAT
TACCCCACAAGTGATGAAGCAGGGCAAGAGCACGTTGGTGCTGATGCATC
CTTTACCACGCGTGGGTGAGATCGACGAGGAGGTAGATCGCGACCCGCGC
GCAGCTTACTTCAGGCAGATGGAGAATGGGATGTATGCGCGTATGGCATT
GGTGGCATTGATTGTGGGGGTGCCCACGTTTCCGGCAGATTCTTCTTAA
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Synonyms
Publications