jgi.p|Nanoce1779_2|599869, mRNA_7743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599869
Unique NamemRNA_7743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length865
Alignment locationscaffold_21:224170..225163 +

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Properties
Property NameValue
TranscriptId599955
TrackFilteredModels2
ProteinId599869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:224170..225163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599869gene_7743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599869mRNA_7743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7743CDS_7743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7743 ID=mRNA_7743|Name=jgi.p|Nanoce1779_2|599869|organism=Nannochloropsis oceanica|type=mRNA|length=865bp
CAAATTACACCTATCCCACACACCCACCAGCACCTGTTCCAACTCCCGCA
AGGCCACTGCCTCCCCCGCGCCGGACAAGCCCTTCGTCAACACTCTTCCG
CTTCGCAACAAGCGATTGACCGCAACCCGTCGTTGGTTCTCACTAGGACC
TTCCACCTTTAGGTCTCTCGCCATCAGGTCAGCCAACACCATACTTTCCA
CCTCCGCACCTCCAATCATTTCCTCCCGTCTCGATCTTCCCCAACGCTTC
CTTGACTGCCCGCTTCCACCGCCGGGTCTTTCCAATTCCCTGGGCACAGG
CAGACGAGCCCCTTTAAAAAGTTTGCGAAGCTGCCGGGCGATTCCTTCGG
GTATTGCCGGGGTCGGCGGCGCGGCGGCAGCTTCGTCGGGAGAAGAGAAG
GGGAATGCTTGAGACCTGGTTGTGGCCGTGGCAAAAGGAGCCTCGCGAGT
GAAACGCGACATTGTGGTAGAGGGAAATGTGAGGCGTGCAGTGAAGATGG
GGGGTGGCAAATGAGCAGCAGCAGCGGCAGAGCCGGCAGGAAGGCCCGTA
TTTGCCTTACTTGTCGACTTTTCCGCTCCTTTTCCCTTAGCCAAGGGCAC
GAGGTGAAATGTCAACTCATAGGAGGCCTCCAGACTTGGTGGTTGAAGGC
CTCGCTGCTGCTCTTGCTGGCATTGCGCGTTCGGTGGTCCTCGGCCCAAG
TGCTCCAACGTGTCGAGGATGGAGTTAAGCTTCTGCAAAGACTGTTCGTT
CATACGCTTCACGGCGGCTGAGGCATTGTGATGGAAATCCGGGTGAATTT
GCTTGACAAAGGGGCGCATTAGCCGCCGCAGCATCGGAATCTGTTTTGGG
CAGAGACCTGGACTG
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protein sequence of jgi.p|Nanoce1779_2|599869

>mRNA_7743-protein ID=mRNA_7743-protein|Name=jgi.p|Nanoce1779_2|599869|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSSSSGRAGRKARICLTCRLFRSFSLSQGHEVKCQLIGGLQTWWLKASLL
LLLALRVRWSSAQVLQRVEDGVKLLQRLFVHTLHGG*
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mRNA from alignment at scaffold_21:224170..225163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7743 ID=mRNA_7743|Name=jgi.p|Nanoce1779_2|599869|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at scaffold_21:224170..225163+ (Nannochloropsis oceanica)
CAAATTACACCTATCCCACACACCCACCAGCACCTGTTCCAACTCCCGCA
AGGCCACTGCCTCCCCCGCGCCGGACAAGCCCTTCGTCAACACTCTTCCG
CTTCGCAACAAGCGATTGACCGCAACCCGTCGTTGGTTCTCACTAGGACC
TTCCACCTTTAGGTCTCTCGCCATCAGGTCAGCCAACACCATACTTTCCA
CCTCCGCACCTCCAATCATTTCCTCCCGTCTCGATCTTCCCCAACGCTTC
CTTGACTGCCCGCTTCCACCGCCGGGTCTTTCCAATTCCCTGGGCACAGG
CAGACGAGCCCCTTTAAAAAGTTTGCGAAGCTGCCGGGCGATTCCTTCGG
GTATTGCCGGGGTCGGCGGCGCGGCGGCAGCTTCGTCGGGAGAAGAGAAG
GGGAATGCTTGAGACCTGGTTGTGGCCGTGGCAAAAGGAGCCTCGCGAGT
GAAACGCGACATTGTGGTAGAGGGAAATGTGAGGCGTGCAGTGAAGATGG
GGGGTGGCAAATGAGCAGCAGCAGCGGCAGAGCCGGCAGGAAGGCCCGTA
TTTGCCTTACTTGTCGACTTTTCCGCTCCTTTTCCCTTAGCCAAGGGCAC
GAGGTGAAATGTCAACTCATAGGAGGCCTCCAGACTTGGTGGTTGAAGGC
CTCGCTGCTGCTCTTGCTGGCATTGCGCGTTCGGTGGTCCTCGGCCCAAG
TGCTCCAACGTGTCGAGGATGGAGTTAAGCTTCTGCAAAGACTGTTCGTT
CATACGCTTCACGGCGGCTGAGGCCTTGTAGAAGGATGATTGGGTTGGGT
AGACAAATTATTCAAATAGAAAAACGTGGGGGTCAGTCCTGTATTAACAT
GCTCCCCCCATTTTTGCCCGCCGACCTCCTCTCCCCCCCTCCCCCCTTCT
TACATTGTGATGGAAATCCGGGTGAATTTGCTTGACAAAGGGGCGCATTA
GCCGCCGCAGCATCGGAATCTGTTTTGGGCAGAGACCTGGACTG
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Coding sequence (CDS) from alignment at scaffold_21:224170..225163+

>mRNA_7743 ID=mRNA_7743|Name=jgi.p|Nanoce1779_2|599869|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_21:224170..225163+ (Nannochloropsis oceanica)
ATGAGCAGCAGCAGCGGCAGAGCCGGCAGGAAGGCCCGTATTTGCCTTAC
TTGTCGACTTTTCCGCTCCTTTTCCCTTAGCCAAGGGCACGAGGTGAAAT
GTCAACTCATAGGAGGCCTCCAGACTTGGTGGTTGAAGGCCTCGCTGCTG
CTCTTGCTGGCATTGCGCGTTCGGTGGTCCTCGGCCCAAGTGCTCCAACG
TGTCGAGGATGGAGTTAAGCTTCTGCAAAGACTGTTCGTTCATACGCTTC
ACGGCGGCTGA
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Synonyms
Publications