jgi.p|Nanoce1779_2|599866, mRNA_7741 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599866
Unique Name	mRNA_7741
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3439
Alignment location	scaffold_21:220246..223955 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599952
Track	FilteredModels2
ProteinId	599866

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:220246..223955 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599866	gene_7741	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599866	mRNA_7741-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7741	CDS_7741	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:220246..223955+
coding sequence from alignment at scaffold_21:220246..223955+

mRNA sequence

>mRNA_7741 ID=mRNA_7741|Name=jgi.p|Nanoce1779_2|599866|organism=Nannochloropsis oceanica|type=mRNA|length=3439bp
ATTTCCTTTGTTTGAAGCGGGGGGGGGAGAACGGGGAGAAAGAGAGGATG
GTAAATCTCAAGCGGCAGCAGCACCAGCAGAATATGAAGCGCTGGTTACG
GAGCAGGAAGTCAAGCTGGGCATCACTGTAGAGAACGTGTTGGAACGCAC
AGTCATTTCACCGTCGCCCGTACCTCCCCAGCCTTAAGCGCTGGAATGGA
AGAAGGCTGTCTGTTCACAGCTCTAGGGGAGTCAAGCACTAGGGCAACGT
GTCACAAGGAGGTCATCGACCGACTTATGCAGATACACAGTCCTTTACGC
CTAACTCTTCGACGGCTCCCCCCGGAGAGGCTACAGCAGCGACGAGCAGA
AATGGTGGCACTAGTACATGCAGACAGCATTCCGGGACGGGAGAGGGGCT
AGTATGGGTGAATGGGACGCTAGTGTGGAATCTTGTGGCCAAGTAGTATG
GTGGGCGGATAAGAAGATGCTGGGCTTGCTGAGGTTGCTTGTGGTTGGAA
GCTTGCCATACCGGAAAAAATGGGGGGGAGAGGAGTAGGAGTTGGAAGAG
ACACAAGGCAAGTGCGACAACGAGAGAAAGGCCTGCTGTCCTCCTTGTCG
CTGGGTGGGGTAGATGAGGGAACTGCAAAGCCTACTCTTGCTTCCCCTTC
CTACATCAGCAACACTTCTGTTGCACCATCGAGCACGTTTTTTGACGACC
GACCGATGCAGTGGCAAGGACGAATACTGGAAATAGCCAACACCGTCCAA
TCTGACCTGCAGCATGCTCGCGCTCGCATCCACACGGCACAATCACGACT
GACAGCTCTAGGACTGAATGAGCGATTGAAGACCTTAAGTGGGCACTTGC
AGACGCTGGTGGAGCTGTTGCTGCGTGGTGTGTGCGGATGCGGGTGGTGG
GAGCTGGGGCAGCCGCCAGCAGTGGTGGTAGCGTTGCGTTGGCAGGTGAT
CGATTTGATTGTGCAGCTCTTATGTGGAGATATAGATGGGTCCCTGACCA
TCACGCAGGGTTCAAGAGACCCAATGGAAGGACCAGCAATTACTTTAGTG
CAAGAGCTAGTGATCCGATTGCCGTCAAGTCAAATTGAGAGCAATGTCAC
CATGTGTCTGTACCGACTAGCGGGCTCATTCTCACTCCACGCCCGTGTGG
CTTGCGCGGCCGTAGCCCCCTGTGTCTATGATCGCCTCCCCTCCGCGCAG
CAATTGCAGGTCCGAGGGTTACTCATGCGCCTGATAGGGGATAAATCAGC
CTTAACCCACTCTGCAGTTGTGGGAACGCTGGCCGAACTAATCGATATGA
TGGACTGTCACAGCGTCAAGTGGCTATATCTCATGCTCGAAGCCTCTGCC
CGAGACGGCTTCCCTCGAATCCGTACCAAAACCCTACAAATCTGCTACTC
CCTTGCTCAAGTTTTCAACAGCACCGCCGTCACATACTCTCTCCGTCCAA
CAGTCCTCCAAGATATACACCTCAACCGATGTAAGCTCCTGCCCTTCGTA
AATTCTGCCTCAGAAGATCCGGATTGGCAGGTGCGGGCGGCATTTGCTTA
TTTCTGCCCGCGATTTGTCGAATGTTTTGGGACCCATTGGGATGACGTCT
TTTAAGAAAATCTTTAGACATTCATGCGTGACGACGAGCTGGTAGTCCGG
AGGCTAGCTGTTGACTCAATCTCTAAAATCGCCGAGGCTTGGTTGGCGCG
TAGTGGGGCTGGAAGAGGGGGAGGGCAGGGGCAGCAGCAGGAAGAGGAAT
ACCAGGCTCAGGAAGGTTTGTCTGTCTCACGGGCGTTGGCTAAGCAGCGG
GTACTCGAGCACCTTCTGCCTGGATTTATTCGCTTAGTATCGGATTCTTT
TGTCCAGATGCGGGCCTCGGTGGCAGAAGTGACCGGGCGACTACAGCGCT
TGCTCACCCAATCCCAGAGCACGCACACAGAACATCCAGCATTAGTAGTG
CCGGCAGCAGCAGGTGCCGGTAGCAGCAGCGGTGGACAGATTATTGGTTG
AGTTGATGACCCCTTTGATGCAGAGGATCCTTCATGGTGATGCACCGGCA
CAAGTGGCCTTGGCGCTACTGCAAAGTATGCAGATGAATGAGGCGATTTT
GTATCATGGCGTGGGATTAGACGAGGGCGAGGGTGGGAGGAGGGACCAAG
TCGCATGTCCTGGCTCCAGCAGCATATGGACAAAGTAGGGGAGCACTTCC
CTGCCTCTCGTGGAGTCGCAGGTGAATCTATTGCTTCCAACATTCATTTC
CTTAGCCTCGCACAGCTCGTGGCGCCTGCGTTAAGCTGTGGTGGAAGCTC
TCCCTTCCTTCCAACTGCTGGTCGGTTCCAGACACAAATACGACGTATCC
CTCCAAGAGCTATGGCAGGACCTGTTTCTGGACGGAGTCGAAAAAACCGT
GCGAAGAGCAGCAGCAACACATTTCATTTTGATTGGCAAGGTATTGGGTC
GGTATCCTCAGTATTGAGCATGGCATCGAGCAAGACGGGCTCGATGCTGG
GTCGAGGAGCGGATGCTGCCGTGTATGCAGGAGTGTCTTGAGTCGCCTGC
ATTTAAGCAGCGTCAGTTGGGGTTGCATGTGGTCGAGGTTTTGTTGAGGG
AGGATTGCTTGGAAAAACGCGACGACTCTTCCCCTTTGATCGACCGAGAA
CTCTGGCCGCTGATTTTGGCGAGACTGAATTACCCTTTGGCTAATGTACG
CTTGGTGGCTGCGACTATCTAGGAGCATAGTTTTAAGGCCTTGCCCAAGC
ATTTGTGGGATTCGAATGAGGCACCGTTGGCGGTGAAAATTGCCAGATTG
TGGAGGAAGGATTGTGATAGATATGTGCGCTTTTTCGCGAAGCAGGTTGC
GGGGAGATTAGGTATTGAGGGAGAGGAAAAGGAATCATTAGGAGTGAGGA
GGGAGGGGGAGAATACAGAGAGGAGAGTGTGAATAGCGGTAGAGGCAATG
ATAAGAGAAATGATGACAGGGAGGAGATGGATAACAAATGCAATAAATTG
TTTTTTGAGTGGAGAAATGAAGACGATAAATGACCGTAATAAAGCACTCT
ACAAATATTCAATACACGTTTGTCGTTTGAAGTCGTCGTCATTCGTTCTG
TTTTCCTGTCTGTGAGTGTATTTTCACACGCATCCAATTCGCAGAGCATA
TACCGACATGCACACTTACATTTGTGGAAGCACCACCAAATGAGGAATCC
AAATGTCTTCATCCCACCGTCGTCGTACTCAAGTTCTCTACCAAAATCTC
ATATTATTTCCAACTCTTCACACCACCACCACACACCACTCTCAATCCAG
TGGGCAAAATTCTCTACACAAAAGCGTATTTAATTCCAAAGTCCCTTGCA
GCATAACTTATCCATCTATGTCCCTCCCGCCAAAATGTCTGGAACCCTTT
TCTCACCAGAAGGTGCCCGCACCCTCGTCCTCCATCCCT

protein sequence of jgi.p|Nanoce1779_2|599866

>mRNA_7741-protein ID=mRNA_7741-protein|Name=jgi.p|Nanoce1779_2|599866|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MGGRGVGVGRDTRQVRQREKGLLSSLSLGGVDEGTAKPTLASPSYISNTS
VAPSSTFFDDRPMQWQGRILEIANTVQSDLQHARARIHTAQSRLTALGLN
ERLKTLSGHLQTLVELLLRGVCGCGWWELGQPPAVVVALRWQVIDLIVQL
LCGDIDGSLTITQGSRDPMEGPAITLVQELVIRLPSSQIESNVTMCLYRL
AGSFSLHARVACAAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAV
VGTLAELIDMMDCHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFN
STAVTYSLRPTVLQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFV
ECFGTHWDDVF*

mRNA from alignment at scaffold_21:220246..223955+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7741 ID=mRNA_7741|Name=jgi.p|Nanoce1779_2|599866|organism=Nannochloropsis oceanica|type=mRNA|length=3710bp|location=Sequence derived from alignment at scaffold_21:220246..223955+ (Nannochloropsis oceanica)
ATTTCCTTTGTTTGAAGCGGGGGGGGGAGAACGGGGAGAAAGAGAGGATG
GTAAATCTCAAGCGGCAGCAGCACCAGCAGAATATGAAGCGCTGGTTACG
GAGCAGGAAGTCAAGCTGGGCATCACTGTAGAGAACGTGTTGGAACGCAC
AGTCATTTGTAAGTGCCTACACAAACAGCTTAGCTTTCCCCACTATTGTC
CCTGACCCACCTCCTGCTATTGGTCAGTCTTTCCCCCCATATATTTACAC
GGGACAAGCACCCTTCTAACGCCCCCCTTTCTCCTCTAAACTCTTCAAAC
ACAAGCACCGTCGCCCGTACCTCCCCAGCCTTAAGCGCTGGAATGGAAGA
AGGCTGTCTGTTCACAGCTCTAGGGGAGTCAAGCACTAGGGCAACGTGTC
ACAAGGAGGTCATCGACCGACTTATGCAGATACACAGTCCTTTACGCCTA
ACTCTTCGACGGCTCCCCCCGGAGAGGCTACAGCAGCGACGAGCAGAAAT
GGTGGCACTAGTACATGCAGACAGCATTCCGGGACGGGAGAGGGGCTAGT
ATGGGTGAATGGGACGCTAGTGTGGAATCTTGTGGCCAAGTAGTATGGTG
GGCGGATAAGAAGATGCTGGGCTTGCTGAGGTTGCTTGTGGTTGGAAGCT
TGGTAAGGGTCAAGCGTTCTTCGCCTCCTCCTCTTCCTCCTCCTTCTCTT
CCTCCTCCTCATTCTTTTTCTCTATCTTTTTCTTCTTCTCCTCCTTCTTC
ATCTCCTCCTTCTCCTTTAATGCCAGCCATACCGGAAAAAATGGGGGGGA
GAGGAGTAGGAGTTGGAAGAGACACAAGGCAAGTGCGACAACGAGAGAAA
GGCCTGCTGTCCTCCTTGTCGCTGGGTGGGGTAGATGAGGGAACTGCAAA
GCCTACTCTTGCTTCCCCTTCCTACATCAGCAACACTTCTGTTGCACCAT
CGAGCACGTTTTTTGACGACCGACCGATGCAGTGGCAAGGACGAATACTG
GAAATAGCCAACACCGTCCAATCTGACCTGCAGCATGCTCGCGCTCGCAT
CCACACGGCACAATCACGACTGACAGCTCTAGGACTGAATGAGCGATTGA
AGACCTTAAGTGGGCACTTGCAGACGCTGGTGGAGCTGTTGCTGCGTGGT
GTGTGCGGATGCGGGTGGTGGGAGCTGGGGCAGCCGCCAGCAGTGGTGGT
AGCGTTGCGTTGGCAGGTGATCGATTTGATTGTGCAGCTCTTATGTGGAG
ATATAGATGGGTCCCTGACCATCACGCAGGGTTCAAGAGACCCAATGGAA
GGACCAGCAATTACTTTAGTGCAAGAGCTAGTGATCCGATTGCCGTCAAG
TCAAATTGAGAGCAATGTCACCATGTGTCTGTACCGACTAGCGGGCTCAT
TCTCACTCCACGCCCGTGTGGCTTGCGCGGCCGTAGCCCCCTGTGTCTAT
GATCGCCTCCCCTCCGCGCAGCAATTGCAGGTCCGAGGGTTACTCATGCG
CCTGATAGGGGATAAATCAGCCTTAACCCACTCTGCAGTTGTGGGAACGC
TGGCCGAACTAATCGATATGATGGACTGTCACAGCGTCAAGTGGCTATAT
CTCATGCTCGAAGCCTCTGCCCGAGACGGCTTCCCTCGAATCCGTACCAA
AACCCTACAAATCTGCTACTCCCTTGCTCAAGTTTTCAACAGCACCGCCG
TCACATACTCTCTCCGTCCAACAGTCCTCCAAGATATACACCTCAACCGA
TGTAAGCTCCTGCCCTTCGTAAATTCTGCCTCAGAAGATCCGGATTGGCA
GGTGCGGGCGGCATTTGCTTATTTCTGCCCGCGATTTGTCGAATGTTTTG
GGACCCATTGGGATGACGTCTTTTAAGAAAATCTTTAGACATTCATGCGT
GACGACGAGCTGGTAGTCCGGAGGCTAGCTGTTGACTCAATCTCTAAAAT
CGCCGAGGCTTGGTTGGCGCGTAGTGGGGCTGGAAGAGGGGGAGGGCAGG
GGCAGCAGCAGGAAGAGGAATACCAGGCTCAGGAAGGTTTGTCTGTCTCA
CGGGCGTTGGCTAAGCAGCGGGTACTCGAGCACCTTCTGCCTGGATTTAT
TCGCTTAGTATCGGATTCTTTTGTCCAGATGCGGGCCTCGGTGGCAGAAG
TGACCGGGCGACTACAGCGCTTGCTCACCCAATCCCAGAGCACGCACACA
GAACATCCAGCATTAGTAGTGCCGGCAGCAGCAGGTGCCGGTAGCAGCAG
CGGTGGACAGATTATTGGTTGAGTTGATGACCCCTTTGATGCAGAGGATC
CTTCATGGTGATGCACCGGCACAAGTGGCCTTGGCGCTACTGCAAAGTAT
GCAGATGAATGAGGCGATTTTGTATCATGGCGTGGGATTAGACGAGGGCG
AGGGTGGGAGGAGGGACCAAGTCGCATGTCCTGGCTCCAGCAGCATATGG
ACAAAGTAGGGGAGCACTTCCCTGCCTCTCGTGGAGTCGCAGGTGAATCT
ATTGCTTCCAACATTCATTTCCTTAGCCTCGCACAGCTCGTGGCGCCTGC
GTTAAGCTGTGGTGGAAGCTCTCCCTTCCTTCCAACTGCTGGTCGGTTCC
AGACACAAATACGACGTATCCCTCCAAGAGCTATGGCAGGACCTGTTTCT
GGACGGAGTCGAAAAAACCGTGCGAAGAGCAGCAGCAACACATTTCATTT
TGATTGGCAAGGTATTGGGTCGGTATCCTCAGTATTGAGCATGGCATCGA
GCAAGACGGGCTCGATGCTGGGTCGAGGAGCGGATGCTGCCGTGTATGCA
GGAGTGTCTTGAGTCGCCTGCATTTAAGCAGCGTCAGTTGGGGTTGCATG
TGGTCGAGGTTTTGTTGAGGGAGGATTGCTTGGAAAAACGCGACGACTCT
TCCCCTTTGATCGACCGAGAACTCTGGCCGCTGATTTTGGCGAGACTGAA
TTACCCTTTGGCTAATGTACGCTTGGTGGCTGCGACTATCTAGGAGCATA
GTTTTAAGGCCTTGCCCAAGCATTTGTGGGATTCGAATGAGGCACCGTTG
GCGGTGAAAATTGCCAGATTGTGGAGGAAGGATTGTGATAGATATGTGCG
CTTTTTCGCGAAGCAGGTTGCGGGGAGATTAGGTATTGAGGGAGAGGAAA
AGGAATCATTAGGAGTGAGGAGGGAGGGGGAGAATACAGAGAGGAGAGTG
TGAATAGCGGTAGAGGCAATGATAAGAGAAATGATGACAGGGAGGAGATG
GATAACAAATGCAATAAATTGTTTTTTGAGTGGAGAAATGAAGACGATAA
ATGACCGTAATAAAGCACTCTACAAATATTCAATACACGTTTGTCGTTTG
AAGTCGTCGTCATTCGTTCTGTTTTCCTGTCTGTGAGTGTATTTTCACAC
GCATCCAATTCGCAGAGCATATACCGACATGCACACTTACATTTGTGGAA
GCACCACCAAATGAGGAATCCAAATGTCTTCATCCCACCGTCGTCGTACT
CAAGTTCTCTACCAAAATCTCATATTATTTCCAACTCTTCACACCACCAC
CACACACCACTCTCAATCCAGTGGGCAAAATTCTCTACACAAAAGCGTAT
TTAATTCCAAAGTCCCTTGCAGCATAACTTATCCATCTATGTCCCTCCCG
CCAAAATGTCTGGAACCCTTTTCTCACCAGAAGGTGCCCGCACCCTCGTC
CTCCATCCCT

Coding sequence (CDS) from alignment at scaffold_21:220246..223955+

>mRNA_7741 ID=mRNA_7741|Name=jgi.p|Nanoce1779_2|599866|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_21:220246..223955+ (Nannochloropsis oceanica)
ATGGGGGGGAGAGGAGTAGGAGTTGGAAGAGACACAAGGCAAGTGCGACA
ACGAGAGAAAGGCCTGCTGTCCTCCTTGTCGCTGGGTGGGGTAGATGAGG
GAACTGCAAAGCCTACTCTTGCTTCCCCTTCCTACATCAGCAACACTTCT
GTTGCACCATCGAGCACGTTTTTTGACGACCGACCGATGCAGTGGCAAGG
ACGAATACTGGAAATAGCCAACACCGTCCAATCTGACCTGCAGCATGCTC
GCGCTCGCATCCACACGGCACAATCACGACTGACAGCTCTAGGACTGAAT
GAGCGATTGAAGACCTTAAGTGGGCACTTGCAGACGCTGGTGGAGCTGTT
GCTGCGTGGTGTGTGCGGATGCGGGTGGTGGGAGCTGGGGCAGCCGCCAG
CAGTGGTGGTAGCGTTGCGTTGGCAGGTGATCGATTTGATTGTGCAGCTC
TTATGTGGAGATATAGATGGGTCCCTGACCATCACGCAGGGTTCAAGAGA
CCCAATGGAAGGACCAGCAATTACTTTAGTGCAAGAGCTAGTGATCCGAT
TGCCGTCAAGTCAAATTGAGAGCAATGTCACCATGTGTCTGTACCGACTA
GCGGGCTCATTCTCACTCCACGCCCGTGTGGCTTGCGCGGCCGTAGCCCC
CTGTGTCTATGATCGCCTCCCCTCCGCGCAGCAATTGCAGGTCCGAGGGT
TACTCATGCGCCTGATAGGGGATAAATCAGCCTTAACCCACTCTGCAGTT
GTGGGAACGCTGGCCGAACTAATCGATATGATGGACTGTCACAGCGTCAA
GTGGCTATATCTCATGCTCGAAGCCTCTGCCCGAGACGGCTTCCCTCGAA
TCCGTACCAAAACCCTACAAATCTGCTACTCCCTTGCTCAAGTTTTCAAC
AGCACCGCCGTCACATACTCTCTCCGTCCAACAGTCCTCCAAGATATACA
CCTCAACCGATGTAAGCTCCTGCCCTTCGTAAATTCTGCCTCAGAAGATC
CGGATTGGCAGGTGCGGGCGGCATTTGCTTATTTCTGCCCGCGATTTGTC
GAATGTTTTGGGACCCATTGGGATGACGTCTTTTAA

Synonyms

Publications