jgi.p|Nanoce1779_2|599863, mRNA_7739 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599863
Unique Name	mRNA_7739
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2256
Alignment location	scaffold_21:216435..218690 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599949
Track	FilteredModels2
ProteinId	599863

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:216435..218690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599863	gene_7739	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599863	mRNA_7739-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7739	CDS_7739	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:216435..218690+
coding sequence from alignment at scaffold_21:216435..218690+

mRNA sequence

>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Nanoce1779_2|599863|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp
CAGATCACACACACCACGACACAAAAAAAAAATGGGTCTCAAGTCACGCC
GCCCCCCCAAGAAAGGGACCGCCGCCGCCGCCAACAAGGGCAAGAAGGTG
GATGACGACGCGAAGACTGAGGCGACCTCGGAAGCATCCGCCTCGACCCT
GAGTCTGGAGAACCTGCGCATGGACAACGGGCCCTCGGGGGTGGATAAGC
TGTCGGCCGAAGGGATTATTGCCACCTATTCGAGCACGAGCAAGGGGATG
CATCGGAACACCAAGGATATCAATGTTCAGGATGTAACAGTGCAGTTTAT
GGGTAAAATCCTCCTCGACGCCTCGGAGATTGTGCTAAACTACGGCAACC
GCTACGGGTTCCTGGGAATGAATGGCTCGGGGAAGTCGACGGTGATGAAG
GTGTTGGGCGCACGAGCTGTGCCTATTCCGGATGGGATTGATATGTTTCA
CTTGACGCATGAGATTGAGGCGAGTGACCTGACGGCGTTGGAAGCTGTGA
TGAGTGTGGATGAGGAGAGGGCGAAGCTGGACAAGGAAGCGGATCTCTTG
AATAATATAATGACAGAGGAGGGGGCTGAGGGGAGGGAGGACTACGACGA
GATTGTCGATCGATTGCAGCAGGTCTATGAGCGGCTGGAGGAGATGGATG
CGTCTACAGCCGAGGTGAGGGCGTGCTCGATATTGAGTGGGTTGGGGTTC
ACCAAGGCGACGATGAAGAAGAAGACGAGGGAGTTTTCGGGTGGGTGGCG
GATGCGTATTGCTTTGGCAAGGGCGCTATTTATTTCTCCGGAGCTGCTGT
TGTTAGATGAGCCGACGAACCATTTGGACATGGAGGCGGTGGTGTGGCTC
GAGGACTACCTGTCGAACTGGAAGAAGATTCTGTTTTTGGTGTCGCATTC
CCAGGATTTTTTGAACAATGTATGCACGCACACGGTGCATTTGACCGAGA
AAAAGCTTAAGTACTACACAGGGAATTACGACTCGTTTGTCCAAACACGC
GCTGAGCTGGAGGAAGAGCAAATGAAGAGGTACAACTGGGAGCAGGACCA
GATCAAGCAGATGAAGGAATACATCGCCAAGTTCGGACACGGCTCTGCGA
AGCTCGCCCGGCAAGCCCAGAGCAAAGAGAAAACCCTGGAGAAAATGGTG
CGGGCGGGACTCACGGATAAGGTCACGAAGGAGGCTCAATTCAACTTCCG
CTTCCCTGACCCAGGATCTCTTCCGCCCCCTGTGCTGCAGCTCGTGAATA
TCACGTTCGGCTACCCGGGGTGTGAGGTCCTATATAGGAACGTAGATTAC
GGCGTAGATCTGGACTCGCGCGTGGCCTTGGTCGGGCCGAATGGGGCGGG
AAAATCGACGTTATTAAAGCTGATGTGCGGGTTGTTGTGCCCGACGGTGG
GAGATGTGCGTCCGCATTCCCATCTGCGCATCTCGACGTTCACACAGCAT
TTCGTGGATGTGTTGGACTTGACCAAGACGCCGCTGGACTTTATGTGTGA
AACGTACAAGGACGGGAGTCGGGAGGAGTTTAGGAAGTTTTTGGGGCGGT
ACGGGGTGTCGGGGGAGGTGCAGACCCAGGTTATGGCGAACTTGTCAGAC
GGGCAGAGAACGAGGGTGGTGTTCGCGAAGATGGCCAAAGACGCCCCGCA
TTTGCTCTTGTTGGATGAGCCAACCAACCACTTGGATATGGAGTCCATTG
ATTCACTGGCGGATGCCATTAATCATTTTGCTGGTGGGGTGGTGTTAGTG
AGTCACGATATGCGCCTGATCTCTCAGGTGGCGAAGGAGATTTGGATGTG
CGATAACAAGACCATTACCAAGTACGATGGCGATATCAGTGACTTTAAGA
TGATCTTAAGAAAGCAGATGCAACTAGACGGGCAACAAAACAAAGTAGGA
AAGCTGGTCGCGGCCAAGCCGCCTAAGGCATCAGCAGCGGGGGGGTCGGA
CAATTAAACTGTACTTACTTGAGGGAGAGGAATGGAGGGAGGGAGGGAGG
AGGGTATCGACGTACGCGTGTTTGTGATAGGTATGACGATAATGTGTCGT
AAAGAAGGGAGAGGGAAATCCGAGGGAGGTGTGAGTGGTAGGAGATAAAT
ATGCAAGGACCAAGGTAAAAATGAGTGGGGTAAGTCGGAGTGGGAGCGAG
GCTGGGTACGTAAATGAAACAAGGGAAAGGTAAGTGAAATGCAAGACAAA
ACAACGACGTCATAGACACGCCCTAAAGAACAACAGGACAGCCAGCAGCT
ATGTCT

protein sequence of jgi.p|Nanoce1779_2|599863

>mRNA_7739-protein ID=mRNA_7739-protein|Name=jgi.p|Nanoce1779_2|599863|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MGLKSRRPPKKGTAAAANKGKKVDDDAKTEATSEASASTLSLENLRMDNG
PSGVDKLSAEGIIATYSSTSKGMHRNTKDINVQDVTVQFMGKILLDASEI
VLNYGNRYGFLGMNGSGKSTVMKVLGARAVPIPDGIDMFHLTHEIEASDL
TALEAVMSVDEERAKLDKEADLLNNIMTEEGAEGREDYDEIVDRLQQVYE
RLEEMDASTAEVRACSILSGLGFTKATMKKKTREFSGGWRMRIALARALF
ISPELLLLDEPTNHLDMEAVVWLEDYLSNWKKILFLVSHSQDFLNNVCTH
TVHLTEKKLKYYTGNYDSFVQTRAELEEEQMKRYNWEQDQIKQMKEYIAK
FGHGSAKLARQAQSKEKTLEKMVRAGLTDKVTKEAQFNFRFPDPGSLPPP
VLQLVNITFGYPGCEVLYRNVDYGVDLDSRVALVGPNGAGKSTLLKLMCG
LLCPTVGDVRPHSHLRISTFTQHFVDVLDLTKTPLDFMCETYKDGSREEF
RKFLGRYGVSGEVQTQVMANLSDGQRTRVVFAKMAKDAPHLLLLDEPTNH
LDMESIDSLADAINHFAGGVVLVSHDMRLISQVAKEIWMCDNKTITKYDG
DISDFKMILRKQMQLDGQQNKVGKLVAAKPPKASAAGGSDN*

mRNA from alignment at scaffold_21:216435..218690+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Nanoce1779_2|599863|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at scaffold_21:216435..218690+ (Nannochloropsis oceanica)
CAGATCACACACACCACGACACAAAAAAAAAATGGGTCTCAAGTCACGCC
GCCCCCCCAAGAAAGGGACCGCCGCCGCCGCCAACAAGGGCAAGAAGGTG
GATGACGACGCGAAGACTGAGGCGACCTCGGAAGCATCCGCCTCGACCCT
GAGTCTGGAGAACCTGCGCATGGACAACGGGCCCTCGGGGGTGGATAAGC
TGTCGGCCGAAGGGATTATTGCCACCTATTCGAGCACGAGCAAGGGGATG
CATCGGAACACCAAGGATATCAATGTTCAGGATGTAACAGTGCAGTTTAT
GGGTAAAATCCTCCTCGACGCCTCGGAGATTGTGCTAAACTACGGCAACC
GCTACGGGTTCCTGGGAATGAATGGCTCGGGGAAGTCGACGGTGATGAAG
GTGTTGGGCGCACGAGCTGTGCCTATTCCGGATGGGATTGATATGTTTCA
CTTGACGCATGAGATTGAGGCGAGTGACCTGACGGCGTTGGAAGCTGTGA
TGAGTGTGGATGAGGAGAGGGCGAAGCTGGACAAGGAAGCGGATCTCTTG
AATAATATAATGACAGAGGAGGGGGCTGAGGGGAGGGAGGACTACGACGA
GATTGTCGATCGATTGCAGCAGGTCTATGAGCGGCTGGAGGAGATGGATG
CGTCTACAGCCGAGGTGAGGGCGTGCTCGATATTGAGTGGGTTGGGGTTC
ACCAAGGCGACGATGAAGAAGAAGACGAGGGAGTTTTCGGGTGGGTGGCG
GATGCGTATTGCTTTGGCAAGGGCGCTATTTATTTCTCCGGAGCTGCTGT
TGTTAGATGAGCCGACGAACCATTTGGACATGGAGGCGGTGGTGTGGCTC
GAGGACTACCTGTCGAACTGGAAGAAGATTCTGTTTTTGGTGTCGCATTC
CCAGGATTTTTTGAACAATGTATGCACGCACACGGTGCATTTGACCGAGA
AAAAGCTTAAGTACTACACAGGGAATTACGACTCGTTTGTCCAAACACGC
GCTGAGCTGGAGGAAGAGCAAATGAAGAGGTACAACTGGGAGCAGGACCA
GATCAAGCAGATGAAGGAATACATCGCCAAGTTCGGACACGGCTCTGCGA
AGCTCGCCCGGCAAGCCCAGAGCAAAGAGAAAACCCTGGAGAAAATGGTG
CGGGCGGGACTCACGGATAAGGTCACGAAGGAGGCTCAATTCAACTTCCG
CTTCCCTGACCCAGGATCTCTTCCGCCCCCTGTGCTGCAGCTCGTGAATA
TCACGTTCGGCTACCCGGGGTGTGAGGTCCTATATAGGAACGTAGATTAC
GGCGTAGATCTGGACTCGCGCGTGGCCTTGGTCGGGCCGAATGGGGCGGG
AAAATCGACGTTATTAAAGCTGATGTGCGGGTTGTTGTGCCCGACGGTGG
GAGATGTGCGTCCGCATTCCCATCTGCGCATCTCGACGTTCACACAGCAT
TTCGTGGATGTGTTGGACTTGACCAAGACGCCGCTGGACTTTATGTGTGA
AACGTACAAGGACGGGAGTCGGGAGGAGTTTAGGAAGTTTTTGGGGCGGT
ACGGGGTGTCGGGGGAGGTGCAGACCCAGGTTATGGCGAACTTGTCAGAC
GGGCAGAGAACGAGGGTGGTGTTCGCGAAGATGGCCAAAGACGCCCCGCA
TTTGCTCTTGTTGGATGAGCCAACCAACCACTTGGATATGGAGTCCATTG
ATTCACTGGCGGATGCCATTAATCATTTTGCTGGTGGGGTGGTGTTAGTG
AGTCACGATATGCGCCTGATCTCTCAGGTGGCGAAGGAGATTTGGATGTG
CGATAACAAGACCATTACCAAGTACGATGGCGATATCAGTGACTTTAAGA
TGATCTTAAGAAAGCAGATGCAACTAGACGGGCAACAAAACAAAGTAGGA
AAGCTGGTCGCGGCCAAGCCGCCTAAGGCATCAGCAGCGGGGGGGTCGGA
CAATTAAACTGTACTTACTTGAGGGAGAGGAATGGAGGGAGGGAGGGAGG
AGGGTATCGACGTACGCGTGTTTGTGATAGGTATGACGATAATGTGTCGT
AAAGAAGGGAGAGGGAAATCCGAGGGAGGTGTGAGTGGTAGGAGATAAAT
ATGCAAGGACCAAGGTAAAAATGAGTGGGGTAAGTCGGAGTGGGAGCGAG
GCTGGGTACGTAAATGAAACAAGGGAAAGGTAAGTGAAATGCAAGACAAA
ACAACGACGTCATAGACACGCCCTAAAGAACAACAGGACAGCCAGCAGCT
ATGTCT

Coding sequence (CDS) from alignment at scaffold_21:216435..218690+

>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Nanoce1779_2|599863|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_21:216435..218690+ (Nannochloropsis oceanica)
ATGGGTCTCAAGTCACGCCGCCCCCCCAAGAAAGGGACCGCCGCCGCCGC
CAACAAGGGCAAGAAGGTGGATGACGACGCGAAGACTGAGGCGACCTCGG
AAGCATCCGCCTCGACCCTGAGTCTGGAGAACCTGCGCATGGACAACGGG
CCCTCGGGGGTGGATAAGCTGTCGGCCGAAGGGATTATTGCCACCTATTC
GAGCACGAGCAAGGGGATGCATCGGAACACCAAGGATATCAATGTTCAGG
ATGTAACAGTGCAGTTTATGGGTAAAATCCTCCTCGACGCCTCGGAGATT
GTGCTAAACTACGGCAACCGCTACGGGTTCCTGGGAATGAATGGCTCGGG
GAAGTCGACGGTGATGAAGGTGTTGGGCGCACGAGCTGTGCCTATTCCGG
ATGGGATTGATATGTTTCACTTGACGCATGAGATTGAGGCGAGTGACCTG
ACGGCGTTGGAAGCTGTGATGAGTGTGGATGAGGAGAGGGCGAAGCTGGA
CAAGGAAGCGGATCTCTTGAATAATATAATGACAGAGGAGGGGGCTGAGG
GGAGGGAGGACTACGACGAGATTGTCGATCGATTGCAGCAGGTCTATGAG
CGGCTGGAGGAGATGGATGCGTCTACAGCCGAGGTGAGGGCGTGCTCGAT
ATTGAGTGGGTTGGGGTTCACCAAGGCGACGATGAAGAAGAAGACGAGGG
AGTTTTCGGGTGGGTGGCGGATGCGTATTGCTTTGGCAAGGGCGCTATTT
ATTTCTCCGGAGCTGCTGTTGTTAGATGAGCCGACGAACCATTTGGACAT
GGAGGCGGTGGTGTGGCTCGAGGACTACCTGTCGAACTGGAAGAAGATTC
TGTTTTTGGTGTCGCATTCCCAGGATTTTTTGAACAATGTATGCACGCAC
ACGGTGCATTTGACCGAGAAAAAGCTTAAGTACTACACAGGGAATTACGA
CTCGTTTGTCCAAACACGCGCTGAGCTGGAGGAAGAGCAAATGAAGAGGT
ACAACTGGGAGCAGGACCAGATCAAGCAGATGAAGGAATACATCGCCAAG
TTCGGACACGGCTCTGCGAAGCTCGCCCGGCAAGCCCAGAGCAAAGAGAA
AACCCTGGAGAAAATGGTGCGGGCGGGACTCACGGATAAGGTCACGAAGG
AGGCTCAATTCAACTTCCGCTTCCCTGACCCAGGATCTCTTCCGCCCCCT
GTGCTGCAGCTCGTGAATATCACGTTCGGCTACCCGGGGTGTGAGGTCCT
ATATAGGAACGTAGATTACGGCGTAGATCTGGACTCGCGCGTGGCCTTGG
TCGGGCCGAATGGGGCGGGAAAATCGACGTTATTAAAGCTGATGTGCGGG
TTGTTGTGCCCGACGGTGGGAGATGTGCGTCCGCATTCCCATCTGCGCAT
CTCGACGTTCACACAGCATTTCGTGGATGTGTTGGACTTGACCAAGACGC
CGCTGGACTTTATGTGTGAAACGTACAAGGACGGGAGTCGGGAGGAGTTT
AGGAAGTTTTTGGGGCGGTACGGGGTGTCGGGGGAGGTGCAGACCCAGGT
TATGGCGAACTTGTCAGACGGGCAGAGAACGAGGGTGGTGTTCGCGAAGA
TGGCCAAAGACGCCCCGCATTTGCTCTTGTTGGATGAGCCAACCAACCAC
TTGGATATGGAGTCCATTGATTCACTGGCGGATGCCATTAATCATTTTGC
TGGTGGGGTGGTGTTAGTGAGTCACGATATGCGCCTGATCTCTCAGGTGG
CGAAGGAGATTTGGATGTGCGATAACAAGACCATTACCAAGTACGATGGC
GATATCAGTGACTTTAAGATGATCTTAAGAAAGCAGATGCAACTAGACGG
GCAACAAAACAAAGTAGGAAAGCTGGTCGCGGCCAAGCCGCCTAAGGCAT
CAGCAGCGGGGGGGTCGGACAATTAA

Synonyms

Publications