jgi.p|Nanoce1779_2|599860, mRNA_7736 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599860
Unique Name	mRNA_7736
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1562
Alignment location	scaffold_21:210536..212097 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599946
Track	FilteredModels2
ProteinId	599860

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:210536..212097 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599860	gene_7736	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599860	mRNA_7736-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7736	CDS_7736	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:210536..212097+
coding sequence from alignment at scaffold_21:210536..212097+

mRNA sequence

>mRNA_7736 ID=mRNA_7736|Name=jgi.p|Nanoce1779_2|599860|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp
ACAGCGATGAAACCGTCACAGAGACACGAGCTTTTGCGGTTGCTGGTCTG
GGTCATAGTGCTGGTGGTGCTGGAATCCATGTCGACGTTGGTGCAGGCTT
TCATTGTCGTGATCCGGGCACCACAGCAGCAGCAGCATCACCACCTCTCG
ACTACCTTGTTGGCAGCACAGACACCCCCTTCGTCCAGTGGAGAAGCCCA
GCATACCCGAAAGATGGATAAGCGGTGGCAAAAAAAGCGGCGACGCGTGG
AGTTGGGACCGGACGGCTTGCCAATCCAGCCCATCCATGCCCCGCGTCAG
ATGCGTGGTGGCGCAAAGCTTAGCAGGATCTCCAAGATGGGAGGCTCCCA
GTCCAAACGCAGTAGCAAGACCCAGGGTAAGGCCTGGGATGCTGCGGCAG
TGGGAACGACGGGCGGTACATCGCGTCTACGTATCATTGGTGGGTCAGCA
CGGGGTAAAAAGTTGGATTCCCCCCCTGTCCATTTGCGCCCCATGATGAG
CAAAGTCCGCGAGGCGCTTTTTTCTACGCTCTTTTCCTTCGACTTATTTG
CAGGGAACAAGCCCCCGCGAGTCTTGGATTTGTTTTGCGGGGCCGGCTCT
GTCGGATTGGAAGCACTGTCACGTGGGGCCGCCGAAGCTGTGTTTGTAGA
CTTGGCACCCGAGTGCTGCGAGTGCGTGGAGCAGAATCTGAAGTGGTGCA
GTTTTGAGGCGGGAAAGAAGGGTAAGGCCGTGCGGGCACGGGCAGAGGAG
GCTTTGAGGGGCCCTGAAAGACTTGGTATCATGGGTACGTTTGATTTGGT
TTCGATAACGCCGCCGTACGAAGAGGTGGTTTATGCGGACCTCATTCGAG
ATGTTATGGAAAGCCCGGCAGTAACAGAGGATACACTGGTCGTGATTGAA
TATCCGGTAGAATTGGGGAGTTTGCCATTTAACATTGGAGATGGAAGACT
TCTGGGCTTGAGGAATAGGAGGTACGGACGTACGGTTCTGGCGATATATG
CCGTGAGGCCGACAGGAAAGAGGAGTGGGGATCTCAGGCCGCAGGAGTTC
GATTTTGCCCCTCAAGCAATTGCGCCAAAGAGGTATGAAGAACAGGAGGA
AGTGAAGGAAGATGAAAACTAAGAGGGACTGTTCATAGATAACCGAGCCC
AGGTAGGCAAAGCAAAATACACACAGCAACTCAAGACGTACAAGGGCGCC
CATTGCTGTGACAGTGTGTGCGCCCCATCTCCGTGGCTGCTCAGGTGCTC
AGCGCATATTCCCTTACATACCCTCTTCTTGTTATCTCAGTCGGCAATCA
TGCTTGCCACTGCTTCTCCCCCTCCTTCCCCCCTCCCCTCAACTCCCTCC
CCTCCTCCTTTGAGCTTCCGCCGCCACGTCCGATTGGTCCTTGCCACCTC
CCCCGGCAAGAGACTGCAGAGCTTCCAGAATACAGCCCGATCCCCACCTG
AGGTCATTTCTACCGTCACCCTCACCCAGTGCCCTCGCTCCCCCTTGTCT
TCCCGCTCCTCCTCTCCTCCACTATTGCCTCCGTTCTCCACCTCCATCCC
TGTCGCCCCTAC

protein sequence of jgi.p|Nanoce1779_2|599860

>mRNA_7736-protein ID=mRNA_7736-protein|Name=jgi.p|Nanoce1779_2|599860|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MKPSQRHELLRLLVWVIVLVVLESMSTLVQAFIVVIRAPQQQQHHHLSTT
LLAAQTPPSSSGEAQHTRKMDKRWQKKRRRVELGPDGLPIQPIHAPRQMR
GGAKLSRISKMGGSQSKRSSKTQGKAWDAAAVGTTGGTSRLRIIGGSARG
KKLDSPPVHLRPMMSKVREALFSTLFSFDLFAGNKPPRVLDLFCGAGSVG
LEALSRGAAEAVFVDLAPECCECVEQNLKWCSFEAGKKGKAVRARAEEAL
RGPERLGIMGTFDLVSITPPYEEVVYADLIRDVMESPAVTEDTLVVIEYP
VELGSLPFNIGDGRLLGLRNRRYGRTVLAIYAVRPTGKRSGDLRPQEFDF
APQAIAPKRYEEQEEVKEDEN*

mRNA from alignment at scaffold_21:210536..212097+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7736 ID=mRNA_7736|Name=jgi.p|Nanoce1779_2|599860|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp|location=Sequence derived from alignment at scaffold_21:210536..212097+ (Nannochloropsis oceanica)
ACAGCGATGAAACCGTCACAGAGACACGAGCTTTTGCGGTTGCTGGTCTG
GGTCATAGTGCTGGTGGTGCTGGAATCCATGTCGACGTTGGTGCAGGCTT
TCATTGTCGTGATCCGGGCACCACAGCAGCAGCAGCATCACCACCTCTCG
ACTACCTTGTTGGCAGCACAGACACCCCCTTCGTCCAGTGGAGAAGCCCA
GCATACCCGAAAGATGGATAAGCGGTGGCAAAAAAAGCGGCGACGCGTGG
AGTTGGGACCGGACGGCTTGCCAATCCAGCCCATCCATGCCCCGCGTCAG
ATGCGTGGTGGCGCAAAGCTTAGCAGGATCTCCAAGATGGGAGGCTCCCA
GTCCAAACGCAGTAGCAAGACCCAGGGTAAGGCCTGGGATGCTGCGGCAG
TGGGAACGACGGGCGGTACATCGCGTCTACGTATCATTGGTGGGTCAGCA
CGGGGTAAAAAGTTGGATTCCCCCCCTGTCCATTTGCGCCCCATGATGAG
CAAAGTCCGCGAGGCGCTTTTTTCTACGCTCTTTTCCTTCGACTTATTTG
CAGGGAACAAGCCCCCGCGAGTCTTGGATTTGTTTTGCGGGGCCGGCTCT
GTCGGATTGGAAGCACTGTCACGTGGGGCCGCCGAAGCTGTGTTTGTAGA
CTTGGCACCCGAGTGCTGCGAGTGCGTGGAGCAGAATCTGAAGTGGTGCA
GTTTTGAGGCGGGAAAGAAGGGTAAGGCCGTGCGGGCACGGGCAGAGGAG
GCTTTGAGGGGCCCTGAAAGACTTGGTATCATGGGTACGTTTGATTTGGT
TTCGATAACGCCGCCGTACGAAGAGGTGGTTTATGCGGACCTCATTCGAG
ATGTTATGGAAAGCCCGGCAGTAACAGAGGATACACTGGTCGTGATTGAA
TATCCGGTAGAATTGGGGAGTTTGCCATTTAACATTGGAGATGGAAGACT
TCTGGGCTTGAGGAATAGGAGGTACGGACGTACGGTTCTGGCGATATATG
CCGTGAGGCCGACAGGAAAGAGGAGTGGGGATCTCAGGCCGCAGGAGTTC
GATTTTGCCCCTCAAGCAATTGCGCCAAAGAGGTATGAAGAACAGGAGGA
AGTGAAGGAAGATGAAAACTAAGAGGGACTGTTCATAGATAACCGAGCCC
AGGTAGGCAAAGCAAAATACACACAGCAACTCAAGACGTACAAGGGCGCC
CATTGCTGTGACAGTGTGTGCGCCCCATCTCCGTGGCTGCTCAGGTGCTC
AGCGCATATTCCCTTACATACCCTCTTCTTGTTATCTCAGTCGGCAATCA
TGCTTGCCACTGCTTCTCCCCCTCCTTCCCCCCTCCCCTCAACTCCCTCC
CCTCCTCCTTTGAGCTTCCGCCGCCACGTCCGATTGGTCCTTGCCACCTC
CCCCGGCAAGAGACTGCAGAGCTTCCAGAATACAGCCCGATCCCCACCTG
AGGTCATTTCTACCGTCACCCTCACCCAGTGCCCTCGCTCCCCCTTGTCT
TCCCGCTCCTCCTCTCCTCCACTATTGCCTCCGTTCTCCACCTCCATCCC
TGTCGCCCCTAC

Coding sequence (CDS) from alignment at scaffold_21:210536..212097+

>mRNA_7736 ID=mRNA_7736|Name=jgi.p|Nanoce1779_2|599860|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_21:210536..212097+ (Nannochloropsis oceanica)
ATGAAACCGTCACAGAGACACGAGCTTTTGCGGTTGCTGGTCTGGGTCAT
AGTGCTGGTGGTGCTGGAATCCATGTCGACGTTGGTGCAGGCTTTCATTG
TCGTGATCCGGGCACCACAGCAGCAGCAGCATCACCACCTCTCGACTACC
TTGTTGGCAGCACAGACACCCCCTTCGTCCAGTGGAGAAGCCCAGCATAC
CCGAAAGATGGATAAGCGGTGGCAAAAAAAGCGGCGACGCGTGGAGTTGG
GACCGGACGGCTTGCCAATCCAGCCCATCCATGCCCCGCGTCAGATGCGT
GGTGGCGCAAAGCTTAGCAGGATCTCCAAGATGGGAGGCTCCCAGTCCAA
ACGCAGTAGCAAGACCCAGGGTAAGGCCTGGGATGCTGCGGCAGTGGGAA
CGACGGGCGGTACATCGCGTCTACGTATCATTGGTGGGTCAGCACGGGGT
AAAAAGTTGGATTCCCCCCCTGTCCATTTGCGCCCCATGATGAGCAAAGT
CCGCGAGGCGCTTTTTTCTACGCTCTTTTCCTTCGACTTATTTGCAGGGA
ACAAGCCCCCGCGAGTCTTGGATTTGTTTTGCGGGGCCGGCTCTGTCGGA
TTGGAAGCACTGTCACGTGGGGCCGCCGAAGCTGTGTTTGTAGACTTGGC
ACCCGAGTGCTGCGAGTGCGTGGAGCAGAATCTGAAGTGGTGCAGTTTTG
AGGCGGGAAAGAAGGGTAAGGCCGTGCGGGCACGGGCAGAGGAGGCTTTG
AGGGGCCCTGAAAGACTTGGTATCATGGGTACGTTTGATTTGGTTTCGAT
AACGCCGCCGTACGAAGAGGTGGTTTATGCGGACCTCATTCGAGATGTTA
TGGAAAGCCCGGCAGTAACAGAGGATACACTGGTCGTGATTGAATATCCG
GTAGAATTGGGGAGTTTGCCATTTAACATTGGAGATGGAAGACTTCTGGG
CTTGAGGAATAGGAGGTACGGACGTACGGTTCTGGCGATATATGCCGTGA
GGCCGACAGGAAAGAGGAGTGGGGATCTCAGGCCGCAGGAGTTCGATTTT
GCCCCTCAAGCAATTGCGCCAAAGAGGTATGAAGAACAGGAGGAAGTGAA
GGAAGATGAAAACTAA

Synonyms

Publications