jgi.p|Nanoce1779_2|599841, mRNA_7734 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599841
Unique Name	mRNA_7734
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2691
Alignment location	scaffold_21:202506..205196 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599927
Track	FilteredModels2
ProteinId	599841

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:202506..205196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599841	gene_7734	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599841	mRNA_7734-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7734	CDS_7734	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:202506..205196+
coding sequence from alignment at scaffold_21:202506..205196+

mRNA sequence

>mRNA_7734 ID=mRNA_7734|Name=jgi.p|Nanoce1779_2|599841|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp
CAGATTAAACCGGCCTCCGATCAGCATTATTATCAGCGTCATCATAGCAC
CATCATGAGCGGCCCGCCCCCACAAGCCCTTGCACCACCTGCTTCTTCCA
TGACCGGCCAGCAGCCACCTCAGCAAGGGCCTACGCCTCCAGCATATTTT
GTTGACACCAAAAAGGGGGAAGTGAGTGAACTCAAGCAGTTGTTAAAGAC
CTTGGCTGTGGAAAGGGAGCCGAAGCGGAAGCGGGACGTGATCAAGAAGG
TGATTGCTTACATGACATTGGGGATTGATGTGTCGCGGCTTTTCACGGAG
ATGGTCATGGCCATTGAGACGCAGGATTTGGTGGTTAAAAAGATGGTGTA
TTTGTATTTGTGCAACTACGCACACGCCAAACCGGACCTCGCCCTCATGT
GCGTGAATACGTTGCAACGAGATTGTTCCGCCGACGACCCCATGGTTCGC
GGACTGGCCTTACGTGCCCTGTGTTCACTGCGATTGCCATCGATGCTCGA
ATATATCTCTACTCCATTGAGGAGGTCCTTGACGGACCAAAGCCCGTATG
TGCGCAAGACAGGGGTGATGGGTATTCTGAAGCTCTTCCACCTCGCGCCG
GAGGTAGCGCGAGCAGCGAACTTTGTGGATTTGTTGTATAATATGATTCA
GGATCCTGACCCGCATGTTGTCGCCAATTGCTTGATTGTTTTAGATGAGG
TACTGGCGGCGGAAGAGGGGGGAATGGCGGTGAATCAGCCGTTGATTTTG
CATTTGCTTGGGAGGTTGGGGGAATTTAGTGAGTGGGGGTTGACGCATGT
GTTGGCGTTGGTGGCAAAGTATAGGCCCGTTGATGAGGAGGAGCTCTTTA
GCATTATGAACTTATTGGACCCAGTGTTGAGGACGTCGAATAGTGGGGTG
GTGCTGAGTACGATCAAGTGTTTTTTGCACTTGACCACAGCAGTGCCTGA
TTTGCAGCCCCAGGTTTATGTGCGGGTGAAAGCGCCGTTGCTGACACTGA
TGGCGGGAGGTAATCCGGAAGTTGAATACTGTATTTTGAAGCATTTAGAG
GCAATTGTTCATCGGGCACCCGGGGTGTTCGATGACGAATATCGCCAGCT
CTATGTTCGGTATAATGAACCGACATTTGTCAAGTACGAAAAAATTGGCA
TTCTGGCCCTCATAGCCAGCGGCGACACCGTCGCAGATATCATGTCCGAG
CTCGCTGAATACGCCACGGACGTCGATCAAGAAGTCTCCCGACGCTCTAT
CCGCGCCATCGGTAGCATTGCTTTCCGCCTGCCTTCCACCGCAGGGATGG
TACTGAAGCGTCTCATCGGATTTTTAGATGTCGATCTGAAGAGCGTCCGG
CCTGAGACTATCCTAGTCATGAAAGACCTACTCCGCCGCTACCCCGAACG
CAAAAGCGAGGTTTTACCCTCCTTACAACTGTGCCTGCGACGTGTGGACG
ACGAGCCAGAGGCCCAAGCAGCTTTGATATGGATGGTGGGGGAGTATGGA
GGGGAGGGGTTCCCCCAAGCGCCCTACCTGGTCGAACCTTTGATTGATGG
GTATGCGGCCTTGGCCTCTGCAACGCTTAAATTAAACTTATTGACGGCGA
CGATGAAGTTGTTTCTGAAGCGGCCGCCTGAGACGCAGAGTATGTTGGGG
AGGCTTCTGGTATCTGCGACAAACGATTTGAGTTCTCAGGATGTGCATGA
TCGGGCCTTGCTTTACTACCGGCTTTTGGCCACTGACGTTCAGGCAGCAA
AGCAGGTGGTGCTTGGGGGGGAGGAAGGAAGTGGTGAGGGTCGGACGGTG
ATTGTTGGAGCATTTGCAGAGGAGAGAGGTATGACGAATTTGAGGGAGAA
GTTGTTTGGGGAGTTTAATACGCTGGCAGTGGTGTACGGGAGGCCCTCGG
CGCAGTTTGTTAGCCCAAGGTACGGTCATACATGCCAATCATCCCTTTAA
GCCATTTGAATGAGATCGCTACATGCCCTGACAGTCCTGTTTGCCTATCT
TCGGGATTACTTATTGACCATATCTCCCTCCCTCCCTTTCTTTCTCCCCT
CCCCAAGCTACCAATGCAAGCCCGCCGAAACCTCCCTCACCCCGTTCCTG
ATGGGCGGACAAGGAGCAGAGAACGGCAACGCAGGGAACAATCTCTTAGA
CCTGAGCGCCGATGACAGCCTGCTTCCAATCGGAGGAGCGGAAGGCGGGC
TGGAGGGCGACTCACCCCCAAGGAGCGGTAGTGTTGATTACACAGGGCCG
AGCCTTGATCTTTTGGATATGGCTGGCTTTGATGCCAACCTTCCGGCTGC
CTCAGTATCGGCAGCAGCGGCAGTAGGAGTAGGAGGGGAACTCGCGAGTT
TAAGAGAAGACACCCCTCCCACCCCCCCTTCGGCATCGTTGGTTCTCGTC
GATTCGTTTCAACTTGGACCCGAGGCCTTCCAGCAGCTCTGGGCAGAGCT
TCCCGAAGTGGGTACTTACAATGTTGCCGTTGTTGCATTGCCTGCCAATG
GGCTGCCTGCTCTAGAGGCGGCGCTGGCAGGGCGGGGGATTACGTGTTTG
GCTAGTGGGGAGATGCCGGATGCGTTCAAGCTCTTTTTGTATGGGCAGGA
TGAGGGGGGGAAGATTTATTTGGTGCAGGCGCTGTTACAGAAGGCTGCGA
GGCGATTGGAGGTGACCCTTAAGGTCAAGGGTGGTGGGGTC

protein sequence of jgi.p|Nanoce1779_2|599841

>mRNA_7734-protein ID=mRNA_7734-protein|Name=jgi.p|Nanoce1779_2|599841|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MSGPPPQALAPPASSMTGQQPPQQGPTPPAYFVDTKKGEVSELKQLLKTL
AVEREPKRKRDVIKKVIAYMTLGIDVSRLFTEMVMAIETQDLVVKKMVYL
YLCNYAHAKPDLALMCVNTLQRDCSADDPMVRGLALRALCSLRLPSMLEY
ISTPLRRSLTDQSPYVRKTGVMGILKLFHLAPEVARAANFVDLLYNMIQD
PDPHVVANCLIVLDEVLAAEEGGMAVNQPLILHLLGRLGEFSEWGLTHVL
ALVAKYRPVDEEELFSIMNLLDPVLRTSNSGVVLSTIKCFLHLTTAVPDL
QPQVYVRVKAPLLTLMAGGNPEVEYCILKHLEAIVHRAPGVFDDEYRQLY
VRYNEPTFVKYEKIGILALIASGDTVADIMSELAEYATDVDQEVSRRSIR
AIGSIAFRLPSTAGMVLKRLIGFLDVDLKSVRPETILVMKDLLRRYPERK
SEVLPSLQLCLRRVDDEPEAQAALIWMVGEYGGEGFPQAPYLVEPLIDGY
AALASATLKLNLLTATMKLFLKRPPETQSMLGRLLVSATNDLSSQDVHDR
ALLYYRLLATDVQAAKQVVLGGEEGSGEGRTVIVGAFAEERGMTNLREKL
FGEFNTLAVVYGRPSAQFVSPRYGHTCQSSL*

mRNA from alignment at scaffold_21:202506..205196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7734 ID=mRNA_7734|Name=jgi.p|Nanoce1779_2|599841|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp|location=Sequence derived from alignment at scaffold_21:202506..205196+ (Nannochloropsis oceanica)
CAGATTAAACCGGCCTCCGATCAGCATTATTATCAGCGTCATCATAGCAC
CATCATGAGCGGCCCGCCCCCACAAGCCCTTGCACCACCTGCTTCTTCCA
TGACCGGCCAGCAGCCACCTCAGCAAGGGCCTACGCCTCCAGCATATTTT
GTTGACACCAAAAAGGGGGAAGTGAGTGAACTCAAGCAGTTGTTAAAGAC
CTTGGCTGTGGAAAGGGAGCCGAAGCGGAAGCGGGACGTGATCAAGAAGG
TGATTGCTTACATGACATTGGGGATTGATGTGTCGCGGCTTTTCACGGAG
ATGGTCATGGCCATTGAGACGCAGGATTTGGTGGTTAAAAAGATGGTGTA
TTTGTATTTGTGCAACTACGCACACGCCAAACCGGACCTCGCCCTCATGT
GCGTGAATACGTTGCAACGAGATTGTTCCGCCGACGACCCCATGGTTCGC
GGACTGGCCTTACGTGCCCTGTGTTCACTGCGATTGCCATCGATGCTCGA
ATATATCTCTACTCCATTGAGGAGGTCCTTGACGGACCAAAGCCCGTATG
TGCGCAAGACAGGGGTGATGGGTATTCTGAAGCTCTTCCACCTCGCGCCG
GAGGTAGCGCGAGCAGCGAACTTTGTGGATTTGTTGTATAATATGATTCA
GGATCCTGACCCGCATGTTGTCGCCAATTGCTTGATTGTTTTAGATGAGG
TACTGGCGGCGGAAGAGGGGGGAATGGCGGTGAATCAGCCGTTGATTTTG
CATTTGCTTGGGAGGTTGGGGGAATTTAGTGAGTGGGGGTTGACGCATGT
GTTGGCGTTGGTGGCAAAGTATAGGCCCGTTGATGAGGAGGAGCTCTTTA
GCATTATGAACTTATTGGACCCAGTGTTGAGGACGTCGAATAGTGGGGTG
GTGCTGAGTACGATCAAGTGTTTTTTGCACTTGACCACAGCAGTGCCTGA
TTTGCAGCCCCAGGTTTATGTGCGGGTGAAAGCGCCGTTGCTGACACTGA
TGGCGGGAGGTAATCCGGAAGTTGAATACTGTATTTTGAAGCATTTAGAG
GCAATTGTTCATCGGGCACCCGGGGTGTTCGATGACGAATATCGCCAGCT
CTATGTTCGGTATAATGAACCGACATTTGTCAAGTACGAAAAAATTGGCA
TTCTGGCCCTCATAGCCAGCGGCGACACCGTCGCAGATATCATGTCCGAG
CTCGCTGAATACGCCACGGACGTCGATCAAGAAGTCTCCCGACGCTCTAT
CCGCGCCATCGGTAGCATTGCTTTCCGCCTGCCTTCCACCGCAGGGATGG
TACTGAAGCGTCTCATCGGATTTTTAGATGTCGATCTGAAGAGCGTCCGG
CCTGAGACTATCCTAGTCATGAAAGACCTACTCCGCCGCTACCCCGAACG
CAAAAGCGAGGTTTTACCCTCCTTACAACTGTGCCTGCGACGTGTGGACG
ACGAGCCAGAGGCCCAAGCAGCTTTGATATGGATGGTGGGGGAGTATGGA
GGGGAGGGGTTCCCCCAAGCGCCCTACCTGGTCGAACCTTTGATTGATGG
GTATGCGGCCTTGGCCTCTGCAACGCTTAAATTAAACTTATTGACGGCGA
CGATGAAGTTGTTTCTGAAGCGGCCGCCTGAGACGCAGAGTATGTTGGGG
AGGCTTCTGGTATCTGCGACAAACGATTTGAGTTCTCAGGATGTGCATGA
TCGGGCCTTGCTTTACTACCGGCTTTTGGCCACTGACGTTCAGGCAGCAA
AGCAGGTGGTGCTTGGGGGGGAGGAAGGAAGTGGTGAGGGTCGGACGGTG
ATTGTTGGAGCATTTGCAGAGGAGAGAGGTATGACGAATTTGAGGGAGAA
GTTGTTTGGGGAGTTTAATACGCTGGCAGTGGTGTACGGGAGGCCCTCGG
CGCAGTTTGTTAGCCCAAGGTACGGTCATACATGCCAATCATCCCTTTAA
GCCATTTGAATGAGATCGCTACATGCCCTGACAGTCCTGTTTGCCTATCT
TCGGGATTACTTATTGACCATATCTCCCTCCCTCCCTTTCTTTCTCCCCT
CCCCAAGCTACCAATGCAAGCCCGCCGAAACCTCCCTCACCCCGTTCCTG
ATGGGCGGACAAGGAGCAGAGAACGGCAACGCAGGGAACAATCTCTTAGA
CCTGAGCGCCGATGACAGCCTGCTTCCAATCGGAGGAGCGGAAGGCGGGC
TGGAGGGCGACTCACCCCCAAGGAGCGGTAGTGTTGATTACACAGGGCCG
AGCCTTGATCTTTTGGATATGGCTGGCTTTGATGCCAACCTTCCGGCTGC
CTCAGTATCGGCAGCAGCGGCAGTAGGAGTAGGAGGGGAACTCGCGAGTT
TAAGAGAAGACACCCCTCCCACCCCCCCTTCGGCATCGTTGGTTCTCGTC
GATTCGTTTCAACTTGGACCCGAGGCCTTCCAGCAGCTCTGGGCAGAGCT
TCCCGAAGTGGGTACTTACAATGTTGCCGTTGTTGCATTGCCTGCCAATG
GGCTGCCTGCTCTAGAGGCGGCGCTGGCAGGGCGGGGGATTACGTGTTTG
GCTAGTGGGGAGATGCCGGATGCGTTCAAGCTCTTTTTGTATGGGCAGGA
TGAGGGGGGGAAGATTTATTTGGTGCAGGCGCTGTTACAGAAGGCTGCGA
GGCGATTGGAGGTGACCCTTAAGGTCAAGGGTGGTGGGGTC

Coding sequence (CDS) from alignment at scaffold_21:202506..205196+

>mRNA_7734 ID=mRNA_7734|Name=jgi.p|Nanoce1779_2|599841|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_21:202506..205196+ (Nannochloropsis oceanica)
ATGAGCGGCCCGCCCCCACAAGCCCTTGCACCACCTGCTTCTTCCATGAC
CGGCCAGCAGCCACCTCAGCAAGGGCCTACGCCTCCAGCATATTTTGTTG
ACACCAAAAAGGGGGAAGTGAGTGAACTCAAGCAGTTGTTAAAGACCTTG
GCTGTGGAAAGGGAGCCGAAGCGGAAGCGGGACGTGATCAAGAAGGTGAT
TGCTTACATGACATTGGGGATTGATGTGTCGCGGCTTTTCACGGAGATGG
TCATGGCCATTGAGACGCAGGATTTGGTGGTTAAAAAGATGGTGTATTTG
TATTTGTGCAACTACGCACACGCCAAACCGGACCTCGCCCTCATGTGCGT
GAATACGTTGCAACGAGATTGTTCCGCCGACGACCCCATGGTTCGCGGAC
TGGCCTTACGTGCCCTGTGTTCACTGCGATTGCCATCGATGCTCGAATAT
ATCTCTACTCCATTGAGGAGGTCCTTGACGGACCAAAGCCCGTATGTGCG
CAAGACAGGGGTGATGGGTATTCTGAAGCTCTTCCACCTCGCGCCGGAGG
TAGCGCGAGCAGCGAACTTTGTGGATTTGTTGTATAATATGATTCAGGAT
CCTGACCCGCATGTTGTCGCCAATTGCTTGATTGTTTTAGATGAGGTACT
GGCGGCGGAAGAGGGGGGAATGGCGGTGAATCAGCCGTTGATTTTGCATT
TGCTTGGGAGGTTGGGGGAATTTAGTGAGTGGGGGTTGACGCATGTGTTG
GCGTTGGTGGCAAAGTATAGGCCCGTTGATGAGGAGGAGCTCTTTAGCAT
TATGAACTTATTGGACCCAGTGTTGAGGACGTCGAATAGTGGGGTGGTGC
TGAGTACGATCAAGTGTTTTTTGCACTTGACCACAGCAGTGCCTGATTTG
CAGCCCCAGGTTTATGTGCGGGTGAAAGCGCCGTTGCTGACACTGATGGC
GGGAGGTAATCCGGAAGTTGAATACTGTATTTTGAAGCATTTAGAGGCAA
TTGTTCATCGGGCACCCGGGGTGTTCGATGACGAATATCGCCAGCTCTAT
GTTCGGTATAATGAACCGACATTTGTCAAGTACGAAAAAATTGGCATTCT
GGCCCTCATAGCCAGCGGCGACACCGTCGCAGATATCATGTCCGAGCTCG
CTGAATACGCCACGGACGTCGATCAAGAAGTCTCCCGACGCTCTATCCGC
GCCATCGGTAGCATTGCTTTCCGCCTGCCTTCCACCGCAGGGATGGTACT
GAAGCGTCTCATCGGATTTTTAGATGTCGATCTGAAGAGCGTCCGGCCTG
AGACTATCCTAGTCATGAAAGACCTACTCCGCCGCTACCCCGAACGCAAA
AGCGAGGTTTTACCCTCCTTACAACTGTGCCTGCGACGTGTGGACGACGA
GCCAGAGGCCCAAGCAGCTTTGATATGGATGGTGGGGGAGTATGGAGGGG
AGGGGTTCCCCCAAGCGCCCTACCTGGTCGAACCTTTGATTGATGGGTAT
GCGGCCTTGGCCTCTGCAACGCTTAAATTAAACTTATTGACGGCGACGAT
GAAGTTGTTTCTGAAGCGGCCGCCTGAGACGCAGAGTATGTTGGGGAGGC
TTCTGGTATCTGCGACAAACGATTTGAGTTCTCAGGATGTGCATGATCGG
GCCTTGCTTTACTACCGGCTTTTGGCCACTGACGTTCAGGCAGCAAAGCA
GGTGGTGCTTGGGGGGGAGGAAGGAAGTGGTGAGGGTCGGACGGTGATTG
TTGGAGCATTTGCAGAGGAGAGAGGTATGACGAATTTGAGGGAGAAGTTG
TTTGGGGAGTTTAATACGCTGGCAGTGGTGTACGGGAGGCCCTCGGCGCA
GTTTGTTAGCCCAAGGTACGGTCATACATGCCAATCATCCCTTTAA

Synonyms

Publications