jgi.p|Nanoce1779_2|599834, mRNA_7733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599834
Unique NamemRNA_7733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1750
Alignment locationscaffold_21:200125..202114 -

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Properties
Property NameValue
TranscriptId599920
TrackFilteredModels2
ProteinId599834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:200125..202114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599834gene_7733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599834mRNA_7733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7733CDS_7733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7733 ID=mRNA_7733|Name=jgi.p|Nanoce1779_2|599834|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
AGGAACCATAGCCAACCGTCTTCGCAAAATACAAGCCCATTTGACCCCGG
TACGTACCTTGGGCAAGGGAGTTGGGGGGGGGTTCAAGCTGGAAGAGCAT
AATGGAGAGTCTGGTTTAGCGGCGCCCTCCTAGAGCGAAACATCCAGCTT
CCTCAACTTGGGGTGCACTGCACCGCGCACACAGCACAAATGCTCCACCA
CTCCTCATGCCTGTCTCTCCTCCTTCCCCCCAACATAGCCGAAAGTTAAG
GAAAACATGCCAGGAAAGGTGCTCCGCGTGGGTGTGATTGGGGTGGGTCG
CATCGGGCGAGTGCATATCGAGTCTATCCAATCCATCAAAGATGCGTGCG
TGACCATGGTGGCTGACATCTGGGAGGATGGTGCGCGGCAGGTGTGTGAG
CAGTACGGCATCCCCAAGTATGTCAAGGACTACAAGGACCTCATCGCCGA
TGCGGACGTCGACGCCGTCCTCATCTGCTCCCCTACGGACCAGCACGCCT
CGCAAATTATGGAGGCCTCTCGAGCAGGCAAGGCTATTTTCTGCGAGAAG
CCCATTTCGCTGAACTTGGAGATCATCGATGAGGTGTGCAATGTGGTGGA
GGAGACAGGGGCCCTGTGCATGGTGGCGTTCCAACGTCGCTTTGACCCCA
CTTTCAAGCGACTGCAAACGGCGGTGGCGAAGGGGGAAGTCGGGAATGTG
CATATGATTGCGATCACGTCTCGGGACCCGGGTCCACCCCCTGTCGCTTA
CATCGCCCAGTCTGGGGGTCTGCACTGTGACATGGCCATTCACGACTTCG
ACATGGCTCGTTTCATTACCGGCTCGGATATCGTTGAGGTCTTTACGAAG
GGGGACTGCAAGATTGACCCTGCAATCGCTGAAGCGGGCGACATCGACAC
TTCTCTGGTGGTGCTCAAATTTGCCAACGGTGTGATTGGCACCATCTCCA
ACTCCCGCAAGGCTACCTATGGGTACGATCAGCGCGTGGAGGTCTTTGGT
AGCAAGGGCATGATTCAGAGCGAGAACTTGCGGCCTAATATGTGCACGAT
CTCAAACGCTGGGAGTGTACACCAGGATTTGCCTTTCAACTTCTTCATGG
ACCGGTACAAGGAGGCTTACAAGGTGGAGATGGAGGAGTTTGTGAGTTGT
GCGATTGCTGGGACGAAGCCCCCCTGTGGCGTGGCGGAGGGACGGGCAGC
GACCAAGGTGGCGATGGCAGCGGCGGCGAGCATGAAGGCAAATGCACCCG
TGGCGCTCTAGAGAGGGTGTGGGCATTCCGTTCCTCAGTCGAAGTGGAAT
GCTGAAAGGGAAGAATGGTGGGGGGATGGAGGGAGGGAGAAGGTGGCCCG
CACGACTTGCCCTGGAGCCGTGACGCTCAAGTGGCACATTAAAGTCCCTG
TCTTATTCATTTTTGTCGTCGCTTGATATGTACTTGTCTGCACGAGAGGT
TGCCTTCACCCCTTCCCCTCCTTTTGTTTTTTTTGTTGGAAAAATCGATT
GAGAGGTGCACCCGCTCACCCCTCCCTTTTTGGTTCTTTTTTTTCGGAGG
ATTGTGAAGATCGATTGAGGGGGAAAAGGAGACAATCACAGCTGCGGCAG
TAATAGCAGTTCACAGGTAGAGATGTGTGTGTGTCTTCACCCTATGTGTG
TGTTGTGACGGAAGGAAAATTATAGCCAAAAGCAGCAGCGGGGAAAGAAC
AAGCTTAGCAAGATCACACAATCCAAAGGGAAACACAACTTTCACTCAAA
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protein sequence of jgi.p|Nanoce1779_2|599834

>mRNA_7733-protein ID=mRNA_7733-protein|Name=jgi.p|Nanoce1779_2|599834|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MPGKVLRVGVIGVGRIGRVHIESIQSIKDACVTMVADIWEDGARQVCEQY
GIPKYVKDYKDLIADADVDAVLICSPTDQHASQIMEASRAGKAIFCEKPI
SLNLEIIDEVCNVVEETGALCMVAFQRRFDPTFKRLQTAVAKGEVGNVHM
IAITSRDPGPPPVAYIAQSGGLHCDMAIHDFDMARFITGSDIVEVFTKGD
CKIDPAIAEAGDIDTSLVVLKFANGVIGTISNSRKATYGYDQRVEVFGSK
GMIQSENLRPNMCTISNAGSVHQDLPFNFFMDRYKEAYKVEMEEFVSCAI
AGTKPPCGVAEGRAATKVAMAAAASMKANAPVAL*
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mRNA from alignment at scaffold_21:200125..202114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7733 ID=mRNA_7733|Name=jgi.p|Nanoce1779_2|599834|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at scaffold_21:200125..202114- (Nannochloropsis oceanica)
AGGAACCATAGCCAACCGTCTTCGCAAAATACAAGCCCATTTGACCCCGG
TACGTACCTTGGGCAAGGGAGTTGGGGGGGGGTTCAAGCTGGAAGAGCAT
AATGGAGAGTCTGGTTTAGCGGCGCCCTCCTAGAGCGAAACATCCAGCTT
CCTCAACTTGGGGTGCACTGCACCGCGCACACAGCACAAATGCTCCACCA
CTCCTCATGCCTGTCTCTCCTCCTTCCCCCCAACATAGCCGAAAGTTAAG
GAAAACATGCCAGGAAAGGTGCGTGCTTTCTCGGAAGGCGGAAGGGAGGG
AGTGGGAAGGCGGCGAGGCGGAGCACTTGAAGTGGACAATTGTGAATGGG
ACAACCTCGTTGGCCGCACCTGTGTATGGTACGGCTCTTCCTTGTGGGCC
GACGGATGCATTGTGTGCATGTGTATAATTGACGACACTTCTTCTTCTTG
CCATGTATGTATGACACACCTCGCGTCACTTCCTCATCCCCCCCCCACCC
CCTTCCAGGTGCTCCGCGTGGGTGTGATTGGGGTGGGTCGCATCGGGCGA
GTGCATATCGAGTCTATCCAATCCATCAAAGATGCGTGCGTGACCATGGT
GGCTGACATCTGGGAGGATGGTGCGCGGCAGGTGTGTGAGCAGTACGGCA
TCCCCAAGTATGTCAAGGACTACAAGGACCTCATCGCCGATGCGGACGTC
GACGCCGTCCTCATCTGCTCCCCTACGGACCAGCACGCCTCGCAAATTAT
GGAGGCCTCTCGAGCAGGCAAGGCTATTTTCTGCGAGAAGCCCATTTCGC
TGAACTTGGAGATCATCGATGAGGTGTGCAATGTGGTGGAGGAGACAGGG
GCCCTGTGCATGGTGGCGTTCCAACGTCGCTTTGACCCCACTTTCAAGCG
ACTGCAAACGGCGGTGGCGAAGGGGGAAGTCGGGAATGTGCATATGATTG
CGATCACGTCTCGGGACCCGGGTCCACCCCCTGTCGCTTACATCGCCCAG
TCTGGGGGTCTGCACTGTGACATGGCCATTCACGACTTCGACATGGCTCG
TTTCATTACCGGCTCGGATATCGTTGAGGTCTTTACGAAGGGGGACTGCA
AGATTGACCCTGCAATCGCTGAAGCGGGCGACATCGACACTTCTCTGGTG
GTGCTCAAATTTGCCAACGGTGTGATTGGCACCATCTCCAACTCCCGCAA
GGCTACCTATGGGTACGATCAGCGCGTGGAGGTCTTTGGTAGCAAGGGCA
TGATTCAGAGCGAGAACTTGCGGCCTAATATGTGCACGATCTCAAACGCT
GGGAGTGTACACCAGGATTTGCCTTTCAACTTCTTCATGGACCGGTACAA
GGAGGCTTACAAGGTGGAGATGGAGGAGTTTGTGAGTTGTGCGATTGCTG
GGACGAAGCCCCCCTGTGGCGTGGCGGAGGGACGGGCAGCGACCAAGGTG
GCGATGGCAGCGGCGGCGAGCATGAAGGCAAATGCACCCGTGGCGCTCTA
GAGAGGGTGTGGGCATTCCGTTCCTCAGTCGAAGTGGAATGCTGAAAGGG
AAGAATGGTGGGGGGATGGAGGGAGGGAGAAGGTGGCCCGCACGACTTGC
CCTGGAGCCGTGACGCTCAAGTGGCACATTAAAGTCCCTGTCTTATTCAT
TTTTGTCGTCGCTTGATATGTACTTGTCTGCACGAGAGGTTGCCTTCACC
CCTTCCCCTCCTTTTGTTTTTTTTGTTGGAAAAATCGATTGAGAGGTGCA
CCCGCTCACCCCTCCCTTTTTGGTTCTTTTTTTTCGGAGGATTGTGAAGA
TCGATTGAGGGGGAAAAGGAGACAATCACAGCTGCGGCAGTAATAGCAGT
TCACAGGTAGAGATGTGTGTGTGTCTTCACCCTATGTGTGTGTTGTGACG
GAAGGAAAATTATAGCCAAAAGCAGCAGCGGGGAAAGAACAAGCTTAGCA
AGATCACACAATCCAAAGGGAAACACAACTTTCACTCAAA
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Coding sequence (CDS) from alignment at scaffold_21:200125..202114-

>mRNA_7733 ID=mRNA_7733|Name=jgi.p|Nanoce1779_2|599834|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_21:200125..202114- (Nannochloropsis oceanica)
GTGCTCCGCGTGGGTGTGATTGGGGTGGGTCGCATCGGGCGAGTGCATAT
CGAGTCTATCCAATCCATCAAAGATGCGTGCGTGACCATGGTGGCTGACA
TCTGGGAGGATGGTGCGCGGCAGGTGTGTGAGCAGTACGGCATCCCCAAG
TATGTCAAGGACTACAAGGACCTCATCGCCGATGCGGACGTCGACGCCGT
CCTCATCTGCTCCCCTACGGACCAGCACGCCTCGCAAATTATGGAGGCCT
CTCGAGCAGGCAAGGCTATTTTCTGCGAGAAGCCCATTTCGCTGAACTTG
GAGATCATCGATGAGGTGTGCAATGTGGTGGAGGAGACAGGGGCCCTGTG
CATGGTGGCGTTCCAACGTCGCTTTGACCCCACTTTCAAGCGACTGCAAA
CGGCGGTGGCGAAGGGGGAAGTCGGGAATGTGCATATGATTGCGATCACG
TCTCGGGACCCGGGTCCACCCCCTGTCGCTTACATCGCCCAGTCTGGGGG
TCTGCACTGTGACATGGCCATTCACGACTTCGACATGGCTCGTTTCATTA
CCGGCTCGGATATCGTTGAGGTCTTTACGAAGGGGGACTGCAAGATTGAC
CCTGCAATCGCTGAAGCGGGCGACATCGACACTTCTCTGGTGGTGCTCAA
ATTTGCCAACGGTGTGATTGGCACCATCTCCAACTCCCGCAAGGCTACCT
ATGGGTACGATCAGCGCGTGGAGGTCTTTGGTAGCAAGGGCATGATTCAG
AGCGAGAACTTGCGGCCTAATATGTGCACGATCTCAAACGCTGGGAGTGT
ACACCAGGATTTGCCTTTCAACTTCTTCATGGACCGGTACAAGGAGGCTT
ACAAGGTGGAGATGGAGGAGTTTGTGAGTTGTGCGATTGCTGGGACGAAG
CCCCCCTGTGGCGTGGCGGAGGGACGGGCAGCGACCAAGGTGGCGATGGC
AGCGGCGGCGAGCATGAAGGCAAATGCACCCGTGGCGCTCTAGATGCCAG
GAAAGGTGCTCCGCGTGGGTGTGATTGGGGTGGGTCGCATCGGGCGAGTG
CATATCGAGTCTATCCAATCCATCAAAGATGCGTGCGTGACCATGGTGGC
TGACATCTGGGAGGATGGTGCGCGGCAGGTGTGTGAGCAGTACGGCATCC
CCAAGTATGTCAAGGACTACAAGGACCTCATCGCCGATGCGGACGTCGAC
GCCGTCCTCATCTGCTCCCCTACGGACCAGCACGCCTCGCAAATTATGGA
GGCCTCTCGAGCAGGCAAGGCTATTTTCTGCGAGAAGCCCATTTCGCTGA
ACTTGGAGATCATCGATGAGGTGTGCAATGTGGTGGAGGAGACAGGGGCC
CTGTGCATGGTGGCGTTCCAACGTCGCTTTGACCCCACTTTCAAGCGACT
GCAAACGGCGGTGGCGAAGGGGGAAGTCGGGAATGTGCATATGATTGCGA
TCACGTCTCGGGACCCGGGTCCACCCCCTGTCGCTTACATCGCCCAGTCT
GGGGGTCTGCACTGTGACATGGCCATTCACGACTTCGACATGGCTCGTTT
CATTACCGGCTCGGATATCGTTGAGGTCTTTACGAAGGGGGACTGCAAGA
TTGACCCTGCAATCGCTGAAGCGGGCGACATCGACACTTCTCTGGTGGTG
CTCAAATTTGCCAACGGTGTGATTGGCACCATCTCCAACTCCCGCAAGGC
TACCTATGGGTACGATCAGCGCGTGGAGGTCTTTGGTAGCAAGGGCATGA
TTCAGAGCGAGAACTTGCGGCCTAATATGTGCACGATCTCAAACGCTGGG
AGTGTACACCAGGATTTGCCTTTCAACTTCTTCATGGACCGGTACAAGGA
GGCTTACAAGGTGGAGATGGAGGAGTTTGTGAGTTGTGCGATTGCTGGGA
CGAAGCCCCCCTGTGGCGTGGCGGAGGGACGGGCAGCGACCAAGGTGGCG
ATGGCAGCGGCGGCGAGCATGAAGGCAAATGCACCCGTGGCGCTCTAGAT
GCCAGGAAAG
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Synonyms
Publications