jgi.p|Nanoce1779_2|667773, mRNA_773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667773
Unique NamemRNA_773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1387
Alignment locationscaffold_2:399480..401267 +

Link to JBrowse

Properties
Property NameValue
TranscriptId667859
TrackFilteredModels2
ProteinId667773
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:399480..401267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667773gene_773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667773mRNA_773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_773CDS_773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_773 ID=mRNA_773|Name=jgi.p|Nanoce1779_2|667773|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
TATTTTGCGTGTTTGGTTGTGAGAACTTGGTGCTTTCCCACCCTTTTCTT
TCGCGTGTCTGCTAACCAAACCCTCGCTGGCACGTTTTCATAACCTCTAC
ATGCTCTTTCCCTTCTTGTTCATGCGCACAGAGTACGGCATGTGGGCTTG
AGGTCTGGGCGTGGTGTCTTCACCACAGTGGTTTCGAGCAAGATGACGAG
TGATGATGATAAACCTCCTGAAGGATGCAAGTCTATAATCCCTCCATGGC
ACATCACACCACATGACCACAGACACATACCGCCAGCAACAGTAGCGGCG
TCAAGTAAGGAGCCATGAGCGCCGAGGCAGAATTGGCGGGGGCTGTGGAC
GAGAACGGGGGAGTGGAGGGCGAGGAGGAGTACTACGAGGAAGAGGAGGA
GGCCGGGATAGAGGGCACAGAGGGGGTTGAGGGAGGAGGGGAAGGACAAG
AAAGCGCTGCGGCTGCCAGCCAGGACGACCCTGAGCATCTCGCCGCGGAG
CTGCAGCGACAGCAAGAAAAGATCCGACAGGAGGAGGAGAAGCTCAAGGA
GATGATGAAGGACGTTGAGGCCTCGACCGGGGGCGCGGCAGGCGCAGTAG
CAGGGACAGGAGGGGAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGCGCAG
GCCGCAATCGACGAAAACTCAATCTACGTCGGTCAAGTCGACTACGAAGT
GACACCAGAAGAGCTCCAAGCCCACTTTCAGAGCTGTGGAACCATCAATA
GAGTCACCATCCTGTGTGATAAACACACGGGTCGTCCCAAGGGCTTCGCG
TACGTGGAATTCTTGGAGACGGCCTCCGTGGAGGGGGCTCTGAAGTTGGA
CAGTTCCCTCTTGAAGGGCCGCTCGATAAAGGGGCAGAGGAAAGAGAAGG
AGGGGACAGGGAGGAAGGGTTGAGTGGAGGTATTAGAAAGACGCACAGGA
TGTACACGTTTTTAACGTATCACTGTTTCTCTGTTTTTTGTGTTGGTAAG
AGAGTGAGAAACGCCGAGAGAGGGAGAGAGAAAAAAAAGGGAGAAGGAAG
ATAAATGGCGGTGCGTCACACAAAAAGCGAGTGCAAGTTAAAGGAGAAGC
TTTTAGAGAACGTGAATTGATTACAATGACGACAACAATACCAATGTGTA
GAGTGAGAGGAAGGATGGGTAAGCAAGCAAATATAATTCAAAGAAACAAA
CAAAAAAGAGGCGGGAGCATCGCTTGCAGGAAAGGGTCAAAGGAGGTAAA
GAAAAAGAAAAAAGGAAGGGAGAGGAGCAACGAGAAATCAACAAGGTAAA
AAAGAAGTATGAAGAAGACAACAATAAAAAAGGACAAATTCCACGGACCC
GCAGGTGCCAACGCTTGCGTTCCTCCCGTCAAAGATT
back to top

protein sequence of jgi.p|Nanoce1779_2|667773

>mRNA_773-protein ID=mRNA_773-protein|Name=jgi.p|Nanoce1779_2|667773|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSAEAELAGAVDENGGVEGEEEYYEEEEEAGIEGTEGVEGGGEGQESAAA
ASQDDPEHLAAELQRQQEKIRQEEEKLKEMMKDVEASTGGAAGAVAGTGG
EEGASGEAAAAQAAIDENSIYVGQVDYEVTPEELQAHFQSCGTINRVTIL
CDKHTGRPKGFAYVEFLETASVEGALKLDSSLLKGRSIKGQRKEKEGTGR
KG*
back to top

mRNA from alignment at scaffold_2:399480..401267+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_773 ID=mRNA_773|Name=jgi.p|Nanoce1779_2|667773|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at scaffold_2:399480..401267+ (Nannochloropsis oceanica)
TATTTTGCGTGTTTGGTTGTGAGAACTTGGTGCTTTCCCACCCTTTTCTT
TCGCGTGTCTGCTAACCAAACCCTCGCTGGCACGTTTTCATAACCTCTAC
ATGCTCTTTCCCTTCTTGTTCATGCGCACAGAGTACGGCATGTGGGCTTG
AGGTCTGGGCGTGGTGTCTTCACCACAGTGGTTTCGAGCAAGATGACGAG
TGATGATGATAAACCTCCTGAAGGATGCAAGTCTATAATCCCTCCATGGC
ACATCACACCACATGACCACAGACACATACCGCCAGCAACAGTAGCGGCG
TCAAGTAAGGAGCCATGAGCGCCGAGGCAGAATTGGCGGGGGCTGTGGAC
GAGAACGGGGGAGTGGAGGGCGAGGAGGAGTACTACGAGGAAGAGGAGGA
GGCCGGGATAGAGGGCACAGAGGGGGTTGAGGGAGGAGGGGAAGGACAAG
AAAGCGCTGCGGCTGCCAGCCAGGACGACCCTGAGCATCTCGCCGCGGAG
CTGCAGCGACAGCAAGAAAAGATCCGACAGGAGGAGGAGAAGCTCAAGGA
GATGATGAAGGACGTTGAGGCCTCGACCGGGGGCGCGGCAGGCGCAGTAG
CAGGGACAGGAGGGGAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGCGCAG
GCCGCAATCGACGAAAACTCAATGTAGGTTTTGGGAGGAAGGGAGTGATA
CGGTGGGCAGGTCGCGGTGAGTGGAGGAGAAGCGTGACCAGAAATTGAGT
GTGATATAGCGCATCATGGAGACACGGAGTAAATGATTGCAGTCTTAGTC
TCGCCCTCCCTATCCACAGTGTTGAATCCTAGCATTTCGATATAACCACT
TACCGATTCCAACCCTGCGTCCCTCACGTCCCCCTGTTCTACCCCCTCCA
GCTACGTCGGTCAAGTCGACTACGAAGTGACACCAGAAGAGCTCCAAGCC
CACTTTCAGAGCTGTGGAACCATCAATAGAGTCACCATCCTGTGTGATAA
ACACACGGGTCGTCCCAAGGGCTTCGCGTACGTGGAATTCTTGGAGACGG
CCTCCGTGGAGGGGGCTCTGAAGTTGGACAGTTCCCTCTTGAAGGGCCGC
TCGATAAAGGTGACACATAAGCGGCACAATGTCCACGGCTTTTTTCGAGG
GAGGGGGGGAGGGAGGGGACGAGGGAGGGGGGGAGGATATAGGGGGGGGC
GGGGGTTATGGGGGGGGGTATGGGTTTCACAGGCCGAGAGGGAGGGGGAG
AGGGAGGGGGAGGTACCACCCTTACTATTAAGGGGCAGAGGAAAGAGAAG
GAGGGGACAGGGAGGAAGGGTTGAGTGGAGGTATTAGAAAGACGCACAGG
ATGTACACGTTTTTAACGTATCACTGTTTCTCTGTTTTTTGTGTTGGTAA
GAGAGTGAGAAACGCCGAGAGAGGGAGAGAGAAAAAAAAGGGAGAAGGAA
GATAAATGGCGGTGCGTCACACAAAAAGCGAGTGCAAGTTAAAGGAGAAG
CTTTTAGAGAACGTGAATTGATTACAATGACGACAACAATACCAATGTGT
AGAGTGAGAGGAAGGATGGGTAAGCAAGCAAATATAATTCAAAGAAACAA
ACAAAAAAGAGGCGGGAGCATCGCTTGCAGGAAAGGGTCAAAGGAGGTAA
AGAAAAAGAAAAAAGGAAGGGAGAGGAGCAACGAGAAATCAACAAGGTAA
AAAAGAAGTATGAAGAAGACAACAATAAAAAAGGACAAATTCCACGGACC
CGCAGGTGCCAACGCTTGCGTTCCTCCCGTCAAAGATT
back to top

Coding sequence (CDS) from alignment at scaffold_2:399480..401267+

>mRNA_773 ID=mRNA_773|Name=jgi.p|Nanoce1779_2|667773|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_2:399480..401267+ (Nannochloropsis oceanica)
ATGAGCGCCGAGGCAGAATTGGCGGGGGCTGTGGACGAGAACGGGGGAGT
GGAGGGCGAGGAGGAGTACTACGAGGAAGAGGAGGAGGCCGGGATAGAGG
GCACAGAGGGGGTTGAGGGAGGAGGGGAAGGACAAGAAAGCGCTGCGGCT
GCCAGCCAGGACGACCCTGAGCATCTCGCCGCGGAGCTGCAGCGACAGCA
AGAAAAGATCCGACAGGAGGAGGAGAAGCTCAAGGAGATGATGAAGGACG
TTGAGGCCTCGACCGGGGGCGCGGCAGGCGCAGTAGCAGGGACAGGAGGG
GAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGCGCAGGCCGCAATCGACGA
AAACTCAATCTACGTCGGTCAAGTCGACTACGAAGTGACACCAGAAGAGC
TCCAAGCCCACTTTCAGAGCTGTGGAACCATCAATAGAGTCACCATCCTG
TGTGATAAACACACGGGTCGTCCCAAGGGCTTCGCGTACGTGGAATTCTT
GGAGACGGCCTCCGTGGAGGGGGCTCTGAAGTTGGACAGTTCCCTCTTGA
AGGGCCGCTCGATAAAGGGGCAGAGGAAAGAGAAGGAGGGGACAGGGAGG
AAGGGTTGAATGAGCGCCGAGGCAGAATTGGCGGGGGCTGTGGACGAGAA
CGGGGGAGTGGAGGGCGAGGAGGAGTACTACGAGGAAGAGGAGGAGGCCG
GGATAGAGGGCACAGAGGGGGTTGAGGGAGGAGGGGAAGGACAAGAAAGC
GCTGCGGCTGCCAGCCAGGACGACCCTGAGCATCTCGCCGCGGAGCTGCA
GCGACAGCAAGAAAAGATCCGACAGGAGGAGGAGAAGCTCAAGGAGATGA
TGAAGGACGTTGAGGCCTCGACCGGGGGCGCGGCAGGCGCAGTAGCAGGG
ACAGGAGGGGAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGCGCAGGCCGC
AATCGACGAAAACTCAATCTACGTCGGTCAAGTCGACTACGAAGTGACAC
CAGAAGAGCTCCAAGCCCACTTTCAGAGCTGTGGAACCATCAATAGAGTC
ACCATCCTGTGTGATAAACACACGGGTCGTCCCAAGGGCTTCGCGTACGT
GGAATTCTTGGAGACGGCCTCCGTGGAGGGGGCTCTGAAGTTGGACAGTT
CCCTCTTGAAGGGCCGCTCGATAAAGGGGCAGAGGAAAGAGAAGGAGGGG
ACAGGGAGGAAGGGTTGAATGAGCGCCGAGGCAGAATTGGCGGGGGCTGT
GGACGAGAACGGGGGAGTGGAGGGCGAGGAGGAGTACTACGAGGAAGAGG
AGGAGGCCGGGATAGAGGGCACAGAGGGGGTTGAGGGAGGAGGGGAAGGA
CAAGAAAGCGCTGCGGCTGCCAGCCAGGACGACCCTGAGCATCTCGCCGC
GGAGCTGCAGCGACAGCAAGAAAAGATCCGACAGGAGGAGGAGAAGCTCA
AGGAGATGATGAAGGACGTTGAGGCCTCGACCGGGGGCGCGGCAGGCGCA
GTAGCAGGGACAGGAGGGGAGGAGGGGGCGAGTGGAGAAGCGGCGGCAGC
GCAGGCCGCAATCGACGAAAACTCAATCTACGTCGGTCAAGTCGACTACG
AAGTGACACCAGAAGAGCTCCAAGCCCACTTTCAGAGCTGTGGAACCATC
AATAGAGTCACCATCCTGTGTGATAAACACACGGGTCGTCCCAAGGGCTT
CGCGTACGTGGAATTCTTGGAGACGGCCTCCGTGGAGGGGGCTCTGAAGT
TGGACAGTTCCCTCTTGAAGGGCCGCTCGATAAAGGGGCAGAGGAAAGAG
AAGGAGGGGACAGGGAGGAAGGGTTGA
back to top
Synonyms
Publications